Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1034.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1033.1 and Xcc-8004.1034.1 are separated by 292 nucleotidesXcc-8004.1034.1 and Xcc-8004.1035.1 are separated by 165 nucleotides Xcc-8004.1033.1: Xcc-8004.1033.1 - hypothetical protein, at 979,415 to 980,584 Xcc-8004.1033.1 Xcc-8004.1034.1: Xcc-8004.1034.1 - Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate, at 980,877 to 982,223 Xcc-8004.1034.1 Xcc-8004.1035.1: Xcc-8004.1035.1 - NADP-dependent malic enzyme (EC 1.1.1.40), at 982,389 to 984,698 Xcc-8004.1035.1 Position (kb) 980 981 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 980.103 kb on + strand, within Xcc-8004.1033.1at 980.104 kb on - strand, within Xcc-8004.1033.1at 980.104 kb on - strand, within Xcc-8004.1033.1at 980.238 kb on + strand, within Xcc-8004.1033.1at 980.239 kb on - strand, within Xcc-8004.1033.1at 980.249 kb on + strand, within Xcc-8004.1033.1at 980.259 kb on + strand, within Xcc-8004.1033.1at 980.259 kb on + strand, within Xcc-8004.1033.1at 980.259 kb on + strand, within Xcc-8004.1033.1at 980.334 kb on + strand, within Xcc-8004.1033.1at 980.334 kb on + strand, within Xcc-8004.1033.1at 980.335 kb on - strand, within Xcc-8004.1033.1at 980.335 kb on - strand, within Xcc-8004.1033.1at 980.335 kb on - strand, within Xcc-8004.1033.1at 980.451 kb on + strand, within Xcc-8004.1033.1at 980.451 kb on + strand, within Xcc-8004.1033.1at 980.451 kb on + strand, within Xcc-8004.1033.1at 980.451 kb on + strand, within Xcc-8004.1033.1at 980.452 kb on - strand, within Xcc-8004.1033.1at 980.452 kb on - strand, within Xcc-8004.1033.1at 980.452 kb on - strand, within Xcc-8004.1033.1at 980.452 kb on - strand, within Xcc-8004.1033.1at 980.452 kb on - strand, within Xcc-8004.1033.1at 980.452 kb on - strand, within Xcc-8004.1033.1at 980.493 kb on + strandat 980.493 kb on + strandat 980.493 kb on + strandat 980.494 kb on - strandat 980.494 kb on - strandat 980.494 kb on - strandat 980.494 kb on - strandat 980.494 kb on - strandat 980.494 kb on - strandat 980.584 kb on + strandat 980.584 kb on + strandat 980.584 kb on + strandat 980.584 kb on + strandat 980.584 kb on + strandat 980.585 kb on - strandat 980.585 kb on - strandat 980.585 kb on - strandat 980.610 kb on + strandat 980.610 kb on + strandat 980.611 kb on - strandat 980.747 kb on + strandat 980.747 kb on + strandat 980.747 kb on + strandat 980.747 kb on + strandat 980.747 kb on + strandat 980.747 kb on + strandat 980.748 kb on - strandat 980.748 kb on - strandat 980.748 kb on - strandat 980.748 kb on - strandat 980.778 kb on - strandat 980.778 kb on - strandat 980.778 kb on - strandat 980.780 kb on + strandat 980.781 kb on - strandat 980.781 kb on - strandat 980.925 kb on + strandat 980.925 kb on + strandat 980.926 kb on - strandat 980.926 kb on - strandat 980.937 kb on + strandat 980.938 kb on - strandat 980.938 kb on - strandat 980.938 kb on - strandat 980.938 kb on - strandat 981.147 kb on + strand, within Xcc-8004.1034.1at 981.147 kb on + strand, within Xcc-8004.1034.1at 981.148 kb on - strand, within Xcc-8004.1034.1at 981.148 kb on - strand, within Xcc-8004.1034.1at 981.148 kb on - strand, within Xcc-8004.1034.1at 981.267 kb on + strand, within Xcc-8004.1034.1at 981.267 kb on + strand, within Xcc-8004.1034.1at 981.267 kb on + strand, within Xcc-8004.1034.1at 981.268 kb on - strand, within Xcc-8004.1034.1at 981.268 kb on - strand, within Xcc-8004.1034.1at 981.268 kb on - strand, within Xcc-8004.1034.1at 981.268 kb on - strand, within Xcc-8004.1034.1at 981.268 kb on - strand, within Xcc-8004.1034.1at 981.269 kb on - strand, within Xcc-8004.1034.1at 981.540 kb on + strand, within Xcc-8004.1034.1at 981.540 kb on + strand, within Xcc-8004.1034.1at 981.541 kb on - strand, within Xcc-8004.1034.1at 981.589 kb on - strand, within Xcc-8004.1034.1at 981.589 kb on - strand, within Xcc-8004.1034.1at 981.673 kb on - strand, within Xcc-8004.1034.1at 981.673 kb on - strand, within Xcc-8004.1034.1at 981.673 kb on - strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.831 kb on + strand, within Xcc-8004.1034.1at 981.832 kb on - strand, within Xcc-8004.1034.1at 981.832 kb on - strand, within Xcc-8004.1034.1at 981.832 kb on - strand, within Xcc-8004.1034.1at 981.832 kb on - strand, within Xcc-8004.1034.1at 981.832 kb on - strand, within Xcc-8004.1034.1at 981.832 kb on - strand, within Xcc-8004.1034.1at 981.832 kb on - strand, within Xcc-8004.1034.1at 981.832 kb on - strand, within Xcc-8004.1034.1at 981.832 kb on - strand, within Xcc-8004.1034.1at 981.832 kb on - strand, within Xcc-8004.1034.1at 981.965 kb on + strand, within Xcc-8004.1034.1at 981.965 kb on + strand, within Xcc-8004.1034.1at 981.965 kb on + strand, within Xcc-8004.1034.1at 981.966 kb on - strand, within Xcc-8004.1034.1at 982.231 kb on + strandat 982.252 kb on + strandat 982.253 kb on - strandat 982.348 kb on + strandat 982.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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980,103 + Xcc-8004.1033.1 0.59 -0.3
980,104 - Xcc-8004.1033.1 0.59 -1.9
980,104 - Xcc-8004.1033.1 0.59 -0.9
980,238 + Xcc-8004.1033.1 0.70 -2.3
980,239 - Xcc-8004.1033.1 0.70 -0.4
980,249 + Xcc-8004.1033.1 0.71 -0.6
980,259 + Xcc-8004.1033.1 0.72 +0.4
980,259 + Xcc-8004.1033.1 0.72 +1.2
980,259 + Xcc-8004.1033.1 0.72 -0.4
980,334 + Xcc-8004.1033.1 0.79 -0.4
980,334 + Xcc-8004.1033.1 0.79 -1.0
980,335 - Xcc-8004.1033.1 0.79 -0.4
980,335 - Xcc-8004.1033.1 0.79 -0.2
980,335 - Xcc-8004.1033.1 0.79 +0.4
980,451 + Xcc-8004.1033.1 0.89 -1.5
980,451 + Xcc-8004.1033.1 0.89 -0.3
980,451 + Xcc-8004.1033.1 0.89 +1.2
980,451 + Xcc-8004.1033.1 0.89 +1.7
980,452 - Xcc-8004.1033.1 0.89 -1.2
980,452 - Xcc-8004.1033.1 0.89 +1.2
980,452 - Xcc-8004.1033.1 0.89 -2.4
980,452 - Xcc-8004.1033.1 0.89 -0.6
980,452 - Xcc-8004.1033.1 0.89 +0.5
980,452 - Xcc-8004.1033.1 0.89 +1.4
980,493 + +0.9
980,493 + -1.2
980,493 + -1.4
980,494 - +1.2
980,494 - +0.2
980,494 - +1.9
980,494 - -0.6
980,494 - +0.3
980,494 - -0.0
980,584 + -0.2
980,584 + +0.4
980,584 + +0.8
980,584 + -1.1
980,584 + -0.8
980,585 - +1.0
980,585 - -0.3
980,585 - -0.3
980,610 + -1.9
980,610 + -2.0
980,611 - +0.4
980,747 + +1.2
980,747 + -2.8
980,747 + -1.8
980,747 + +2.1
980,747 + -1.2
980,747 + -1.1
980,748 - -0.3
980,748 - +1.5
980,748 - -0.0
980,748 - -0.3
980,778 - -0.8
980,778 - +3.4
980,778 - +1.1
980,780 + -0.3
980,781 - -1.9
980,781 - +0.4
980,925 + -0.7
980,925 + -0.1
980,926 - +0.1
980,926 - +0.1
980,937 + -1.8
980,938 - +0.3
980,938 - -0.3
980,938 - -1.5
980,938 - +1.0
981,147 + Xcc-8004.1034.1 0.20 +0.4
981,147 + Xcc-8004.1034.1 0.20 +0.2
981,148 - Xcc-8004.1034.1 0.20 -0.6
981,148 - Xcc-8004.1034.1 0.20 +0.6
981,148 - Xcc-8004.1034.1 0.20 -2.0
981,267 + Xcc-8004.1034.1 0.29 -0.9
981,267 + Xcc-8004.1034.1 0.29 -1.7
981,267 + Xcc-8004.1034.1 0.29 +0.5
981,268 - Xcc-8004.1034.1 0.29 -0.5
981,268 - Xcc-8004.1034.1 0.29 +0.2
981,268 - Xcc-8004.1034.1 0.29 -0.3
981,268 - Xcc-8004.1034.1 0.29 -2.9
981,268 - Xcc-8004.1034.1 0.29 -3.7
981,269 - Xcc-8004.1034.1 0.29 +1.8
981,540 + Xcc-8004.1034.1 0.49 -1.6
981,540 + Xcc-8004.1034.1 0.49 +0.3
981,541 - Xcc-8004.1034.1 0.49 +0.3
981,589 - Xcc-8004.1034.1 0.53 -1.3
981,589 - Xcc-8004.1034.1 0.53 -2.8
981,673 - Xcc-8004.1034.1 0.59 -0.8
981,673 - Xcc-8004.1034.1 0.59 +0.1
981,673 - Xcc-8004.1034.1 0.59 +1.4
981,831 + Xcc-8004.1034.1 0.71 +0.8
981,831 + Xcc-8004.1034.1 0.71 -0.0
981,831 + Xcc-8004.1034.1 0.71 -0.8
981,831 + Xcc-8004.1034.1 0.71 -0.6
981,831 + Xcc-8004.1034.1 0.71 -0.8
981,831 + Xcc-8004.1034.1 0.71 +0.4
981,831 + Xcc-8004.1034.1 0.71 -1.2
981,831 + Xcc-8004.1034.1 0.71 +0.1
981,831 + Xcc-8004.1034.1 0.71 +0.1
981,831 + Xcc-8004.1034.1 0.71 -1.2
981,831 + Xcc-8004.1034.1 0.71 +0.2
981,831 + Xcc-8004.1034.1 0.71 +0.3
981,831 + Xcc-8004.1034.1 0.71 -0.8
981,832 - Xcc-8004.1034.1 0.71 -0.3
981,832 - Xcc-8004.1034.1 0.71 -0.6
981,832 - Xcc-8004.1034.1 0.71 -0.9
981,832 - Xcc-8004.1034.1 0.71 -1.6
981,832 - Xcc-8004.1034.1 0.71 -0.5
981,832 - Xcc-8004.1034.1 0.71 +0.3
981,832 - Xcc-8004.1034.1 0.71 +1.1
981,832 - Xcc-8004.1034.1 0.71 -2.3
981,832 - Xcc-8004.1034.1 0.71 -1.0
981,832 - Xcc-8004.1034.1 0.71 +0.8
981,965 + Xcc-8004.1034.1 0.81 +1.2
981,965 + Xcc-8004.1034.1 0.81 -0.9
981,965 + Xcc-8004.1034.1 0.81 +1.5
981,966 - Xcc-8004.1034.1 0.81 +0.7
982,231 + -1.0
982,252 + +0.9
982,253 - +1.6
982,348 + +0.4
982,395 - -1.0

Or see this region's nucleotide sequence