Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.767.1 and Xcc-8004.768.1 are separated by 153 nucleotides Xcc-8004.768.1 and Xcc-8004.769.1 are separated by 93 nucleotides Xcc-8004.769.1 and Xcc-8004.770.1 are separated by 6 nucleotides Xcc-8004.770.1 and Xcc-8004.771.1 are separated by 27 nucleotides
Xcc-8004.767.1: Xcc-8004.767.1 - FIG01210758: hypothetical protein, at 713,188 to 714,579
Xcc-8004.767.1
Xcc-8004.768.1: Xcc-8004.768.1 - Glutathione S-transferase, omega (EC 2.5.1.18), at 714,733 to 715,704
Xcc-8004.768.1
Xcc-8004.769.1: Xcc-8004.769.1 - Lactoylglutathione lyase and related lyases, at 715,798 to 716,190
Xcc-8004.769.1
Xcc-8004.770.1: Xcc-8004.770.1 - hypothetical protein, at 716,197 to 716,328
Xcc-8004.770.1
Xcc-8004.771.1: Xcc-8004.771.1 - FIG01209961: hypothetical protein, at 716,356 to 716,817
Xcc-8004.771.1
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.859 kb on - strand, within Xcc-8004.767.1 at 713.912 kb on - strand, within Xcc-8004.767.1 at 713.912 kb on - strand, within Xcc-8004.767.1 at 714.135 kb on + strand, within Xcc-8004.767.1 at 714.232 kb on + strand, within Xcc-8004.767.1 at 714.236 kb on - strand, within Xcc-8004.767.1 at 714.236 kb on - strand, within Xcc-8004.767.1 at 714.236 kb on - strand, within Xcc-8004.767.1 at 714.299 kb on + strand, within Xcc-8004.767.1 at 714.515 kb on - strand at 714.565 kb on - strand at 714.565 kb on - strand at 714.566 kb on + strand at 714.567 kb on - strand at 714.567 kb on - strand at 714.704 kb on + strand at 714.705 kb on - strand at 714.705 kb on - strand at 714.716 kb on + strand at 714.716 kb on + strand at 714.772 kb on + strand at 714.772 kb on + strand at 714.895 kb on + strand, within Xcc-8004.768.1 at 714.896 kb on - strand, within Xcc-8004.768.1 at 714.904 kb on + strand, within Xcc-8004.768.1 at 714.904 kb on + strand, within Xcc-8004.768.1 at 714.905 kb on - strand, within Xcc-8004.768.1 at 714.905 kb on - strand, within Xcc-8004.768.1 at 714.905 kb on - strand, within Xcc-8004.768.1 at 715.072 kb on + strand, within Xcc-8004.768.1 at 715.072 kb on + strand, within Xcc-8004.768.1 at 715.079 kb on - strand, within Xcc-8004.768.1 at 715.079 kb on - strand, within Xcc-8004.768.1 at 715.079 kb on - strand, within Xcc-8004.768.1 at 715.087 kb on + strand, within Xcc-8004.768.1 at 715.087 kb on + strand, within Xcc-8004.768.1 at 715.088 kb on - strand, within Xcc-8004.768.1 at 715.156 kb on - strand, within Xcc-8004.768.1 at 715.269 kb on + strand, within Xcc-8004.768.1 at 715.270 kb on - strand, within Xcc-8004.768.1 at 715.313 kb on - strand, within Xcc-8004.768.1 at 715.345 kb on + strand, within Xcc-8004.768.1 at 715.346 kb on - strand, within Xcc-8004.768.1 at 715.414 kb on + strand, within Xcc-8004.768.1 at 715.415 kb on - strand, within Xcc-8004.768.1 at 715.486 kb on + strand, within Xcc-8004.768.1 at 715.486 kb on + strand, within Xcc-8004.768.1 at 715.487 kb on - strand, within Xcc-8004.768.1 at 715.561 kb on + strand, within Xcc-8004.768.1 at 715.561 kb on + strand, within Xcc-8004.768.1 at 715.616 kb on - strand at 715.616 kb on - strand at 715.616 kb on - strand at 715.618 kb on + strand at 715.618 kb on + strand at 715.619 kb on - strand at 715.740 kb on + strand at 715.740 kb on + strand at 715.762 kb on + strand at 715.782 kb on + strand at 715.783 kb on - strand at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.921 kb on - strand, within Xcc-8004.769.1 at 715.921 kb on - strand, within Xcc-8004.769.1 at 716.085 kb on + strand, within Xcc-8004.769.1 at 716.140 kb on + strand, within Xcc-8004.769.1 at 716.141 kb on - strand, within Xcc-8004.769.1 at 716.188 kb on + strand at 716.252 kb on - strand, within Xcc-8004.770.1 at 716.252 kb on - strand, within Xcc-8004.770.1 at 716.256 kb on - strand, within Xcc-8004.770.1 at 716.323 kb on - strand at 716.323 kb on - strand at 716.480 kb on + strand, within Xcc-8004.771.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 713,858 + Xcc-8004.767.1 0.48 +1.6 713,858 + Xcc-8004.767.1 0.48 -1.4 713,858 + Xcc-8004.767.1 0.48 -2.2 713,858 + Xcc-8004.767.1 0.48 -0.2 713,859 - Xcc-8004.767.1 0.48 +1.0 713,912 - Xcc-8004.767.1 0.52 -1.0 713,912 - Xcc-8004.767.1 0.52 +2.2 714,135 + Xcc-8004.767.1 0.68 +0.1 714,232 + Xcc-8004.767.1 0.75 +0.4 714,236 - Xcc-8004.767.1 0.75 -0.2 714,236 - Xcc-8004.767.1 0.75 -1.8 714,236 - Xcc-8004.767.1 0.75 +2.2 714,299 + Xcc-8004.767.1 0.80 +0.8 714,515 - +0.3 714,565 - -0.0 714,565 - -1.1 714,566 + +1.0 714,567 - +0.4 714,567 - +0.7 714,704 + -0.9 714,705 - +3.4 714,705 - +1.3 714,716 + -1.4 714,716 + +0.6 714,772 + +4.0 714,772 + -0.7 714,895 + Xcc-8004.768.1 0.17 +2.6 714,896 - Xcc-8004.768.1 0.17 -0.1 714,904 + Xcc-8004.768.1 0.18 -2.9 714,904 + Xcc-8004.768.1 0.18 -1.0 714,905 - Xcc-8004.768.1 0.18 +1.6 714,905 - Xcc-8004.768.1 0.18 +0.5 714,905 - Xcc-8004.768.1 0.18 -0.9 715,072 + Xcc-8004.768.1 0.35 +0.6 715,072 + Xcc-8004.768.1 0.35 +0.6 715,079 - Xcc-8004.768.1 0.36 +0.3 715,079 - Xcc-8004.768.1 0.36 -1.8 715,079 - Xcc-8004.768.1 0.36 +0.5 715,087 + Xcc-8004.768.1 0.36 -0.6 715,087 + Xcc-8004.768.1 0.36 +1.0 715,088 - Xcc-8004.768.1 0.37 -1.2 715,156 - Xcc-8004.768.1 0.44 -0.8 715,269 + Xcc-8004.768.1 0.55 -2.5 715,270 - Xcc-8004.768.1 0.55 +0.5 715,313 - Xcc-8004.768.1 0.60 -0.7 715,345 + Xcc-8004.768.1 0.63 -1.9 715,346 - Xcc-8004.768.1 0.63 -1.3 715,414 + Xcc-8004.768.1 0.70 -0.3 715,415 - Xcc-8004.768.1 0.70 +1.5 715,486 + Xcc-8004.768.1 0.77 -0.9 715,486 + Xcc-8004.768.1 0.77 -1.4 715,487 - Xcc-8004.768.1 0.78 +0.1 715,561 + Xcc-8004.768.1 0.85 -0.3 715,561 + Xcc-8004.768.1 0.85 +0.3 715,616 - -0.9 715,616 - +1.3 715,616 - -0.4 715,618 + -2.3 715,618 + -0.6 715,619 - -0.9 715,740 + +0.2 715,740 + -0.2 715,762 + -1.0 715,782 + +1.8 715,783 - -0.0 715,920 + Xcc-8004.769.1 0.31 -0.6 715,920 + Xcc-8004.769.1 0.31 +0.3 715,920 + Xcc-8004.769.1 0.31 -0.7 715,920 + Xcc-8004.769.1 0.31 +1.3 715,921 - Xcc-8004.769.1 0.31 -0.1 715,921 - Xcc-8004.769.1 0.31 -1.7 716,085 + Xcc-8004.769.1 0.73 +0.5 716,140 + Xcc-8004.769.1 0.87 -0.4 716,141 - Xcc-8004.769.1 0.87 +2.3 716,188 + +2.2 716,252 - Xcc-8004.770.1 0.42 +0.4 716,252 - Xcc-8004.770.1 0.42 -0.7 716,256 - Xcc-8004.770.1 0.45 -1.6 716,323 - -0.6 716,323 - -0.9 716,480 + Xcc-8004.771.1 0.27 +3.0
Or see this region's nucleotide sequence