Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.623.1 and Xcc-8004.624.1 are separated by 336 nucleotides Xcc-8004.624.1 and Xcc-8004.625.1 are separated by 137 nucleotides
Xcc-8004.623.1: Xcc-8004.623.1 - Phosphoserine phosphatase, at 574,660 to 575,376
Xcc-8004.623.1
Xcc-8004.624.1: Xcc-8004.624.1 - Cyclic AMP receptor protein, at 575,713 to 576,405
Xcc-8004.624.1
Xcc-8004.625.1: Xcc-8004.625.1 - S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A, at 576,543 to 577,337
Xcc-8004.625.1
Position (kb) 575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 574.730 kb on - strand at 574.871 kb on - strand, within Xcc-8004.623.1 at 574.933 kb on + strand, within Xcc-8004.623.1 at 574.933 kb on + strand, within Xcc-8004.623.1 at 574.934 kb on - strand, within Xcc-8004.623.1 at 575.208 kb on + strand, within Xcc-8004.623.1 at 575.216 kb on - strand, within Xcc-8004.623.1 at 575.312 kb on + strand at 575.312 kb on + strand at 575.375 kb on - strand at 575.401 kb on - strand at 575.418 kb on + strand at 575.419 kb on - strand at 575.419 kb on - strand at 575.528 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.615 kb on + strand at 575.616 kb on - strand at 575.616 kb on - strand at 575.714 kb on + strand at 575.715 kb on - strand at 575.715 kb on - strand at 575.715 kb on - strand at 575.726 kb on + strand at 575.726 kb on + strand at 575.727 kb on - strand at 575.727 kb on - strand at 575.965 kb on - strand, within Xcc-8004.624.1 at 576.002 kb on + strand, within Xcc-8004.624.1 at 576.003 kb on - strand, within Xcc-8004.624.1 at 576.062 kb on + strand, within Xcc-8004.624.1 at 576.063 kb on - strand, within Xcc-8004.624.1 at 576.063 kb on - strand, within Xcc-8004.624.1 at 576.170 kb on + strand, within Xcc-8004.624.1 at 576.171 kb on - strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.239 kb on + strand, within Xcc-8004.624.1 at 576.239 kb on + strand, within Xcc-8004.624.1 at 576.239 kb on + strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.367 kb on + strand at 576.368 kb on - strand at 576.368 kb on - strand at 576.398 kb on - strand at 576.408 kb on + strand at 576.408 kb on + strand at 576.408 kb on + strand at 576.408 kb on + strand at 576.408 kb on + strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.457 kb on - strand at 576.457 kb on - strand at 576.457 kb on - strand at 577.335 kb on + strand at 577.335 kb on + strand at 577.341 kb on + strand at 577.341 kb on + strand at 577.341 kb on + strand at 577.341 kb on + strand at 577.342 kb on - strand at 577.342 kb on - strand at 577.358 kb on + strand at 577.358 kb on + strand at 577.358 kb on + strand at 577.358 kb on + strand at 577.359 kb on - strand at 577.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 574,730 - -2.5 574,871 - Xcc-8004.623.1 0.29 -0.1 574,933 + Xcc-8004.623.1 0.38 +0.1 574,933 + Xcc-8004.623.1 0.38 +0.1 574,934 - Xcc-8004.623.1 0.38 -0.3 575,208 + Xcc-8004.623.1 0.76 -3.1 575,216 - Xcc-8004.623.1 0.78 -1.1 575,312 + +1.5 575,312 + -0.9 575,375 - +0.2 575,401 - -2.3 575,418 + -0.8 575,419 - +0.2 575,419 - -1.7 575,528 + +1.0 575,537 + +0.5 575,537 + +0.5 575,537 + -0.3 575,537 + -1.0 575,537 + +1.0 575,538 - -1.5 575,538 - -0.1 575,538 - +1.4 575,538 - -1.1 575,538 - +1.3 575,538 - -0.7 575,538 - -0.6 575,538 - -0.9 575,538 - +1.7 575,615 + +0.7 575,616 - +0.1 575,616 - -0.3 575,714 + +0.6 575,715 - +3.1 575,715 - +3.6 575,715 - +1.4 575,726 + +3.5 575,726 + +2.5 575,727 - +1.2 575,727 - +5.3 575,965 - Xcc-8004.624.1 0.36 +2.0 576,002 + Xcc-8004.624.1 0.42 +1.1 576,003 - Xcc-8004.624.1 0.42 +1.3 576,062 + Xcc-8004.624.1 0.50 +1.5 576,063 - Xcc-8004.624.1 0.51 +5.8 576,063 - Xcc-8004.624.1 0.51 +2.2 576,170 + Xcc-8004.624.1 0.66 +3.7 576,171 - Xcc-8004.624.1 0.66 +1.0 576,236 + Xcc-8004.624.1 0.75 +3.6 576,236 + Xcc-8004.624.1 0.75 +4.8 576,236 + Xcc-8004.624.1 0.75 +3.7 576,236 + Xcc-8004.624.1 0.75 +2.0 576,236 + Xcc-8004.624.1 0.75 +4.1 576,236 + Xcc-8004.624.1 0.75 +3.7 576,236 + Xcc-8004.624.1 0.75 +0.7 576,236 + Xcc-8004.624.1 0.75 +3.0 576,236 + Xcc-8004.624.1 0.75 +5.1 576,236 + Xcc-8004.624.1 0.75 +2.6 576,237 - Xcc-8004.624.1 0.76 +2.9 576,237 - Xcc-8004.624.1 0.76 +2.5 576,237 - Xcc-8004.624.1 0.76 +3.7 576,237 - Xcc-8004.624.1 0.76 +3.2 576,237 - Xcc-8004.624.1 0.76 +2.6 576,239 + Xcc-8004.624.1 0.76 +2.3 576,239 + Xcc-8004.624.1 0.76 +1.4 576,239 + Xcc-8004.624.1 0.76 +3.5 576,240 - Xcc-8004.624.1 0.76 +3.4 576,240 - Xcc-8004.624.1 0.76 +2.7 576,240 - Xcc-8004.624.1 0.76 +3.8 576,240 - Xcc-8004.624.1 0.76 +2.9 576,363 + +3.1 576,363 + +1.9 576,363 + +0.4 576,363 + +2.5 576,363 + +1.5 576,363 + +2.9 576,363 + +3.4 576,364 - +6.1 576,364 - -0.2 576,364 - +2.1 576,364 - +2.9 576,364 - +2.6 576,364 - +3.7 576,367 + +2.1 576,368 - +1.5 576,368 - +3.2 576,398 - +2.8 576,408 + +0.9 576,408 + +1.4 576,408 + +1.3 576,408 + +0.1 576,408 + +2.6 576,409 - -0.9 576,409 - +2.2 576,409 - +0.9 576,409 - +0.7 576,409 - -0.9 576,409 - +3.5 576,409 - +1.0 576,457 - +2.6 576,457 - -0.9 576,457 - +0.8 577,335 + -0.1 577,335 + -0.8 577,341 + +0.2 577,341 + -0.3 577,341 + -0.7 577,341 + -0.2 577,342 - -0.1 577,342 - -0.6 577,358 + -0.4 577,358 + +1.1 577,358 + +1.2 577,358 + -0.8 577,359 - -1.5 577,359 - -0.8
Or see this region's nucleotide sequence