Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5301.1 and Xcc-8004.5302.1 are separated by 354 nucleotides Xcc-8004.5302.1 and Xcc-8004.5303.1 overlap by 14 nucleotides
Xcc-8004.5301.1: Xcc-8004.5301.1 - hypothetical protein, at 5,043,221 to 5,043,934
Xcc-8004.5301.1
Xcc-8004.5302.1: Xcc-8004.5302.1 - FIG039767: hypothetical protein, at 5,044,289 to 5,044,996
Xcc-8004.5302.1
Xcc-8004.5303.1: Xcc-8004.5303.1 - FIG149030: hypothetical protein, at 5,044,983 to 5,046,452
Xcc-8004.5303.1
Position (kb) 5044
5045 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5043.344 kb on + strand, within Xcc-8004.5301.1 at 5043.344 kb on + strand, within Xcc-8004.5301.1 at 5043.361 kb on + strand, within Xcc-8004.5301.1 at 5043.487 kb on - strand, within Xcc-8004.5301.1 at 5043.489 kb on + strand, within Xcc-8004.5301.1 at 5043.489 kb on + strand, within Xcc-8004.5301.1 at 5043.489 kb on + strand, within Xcc-8004.5301.1 at 5043.490 kb on - strand, within Xcc-8004.5301.1 at 5043.490 kb on - strand, within Xcc-8004.5301.1 at 5043.510 kb on + strand, within Xcc-8004.5301.1 at 5043.510 kb on + strand, within Xcc-8004.5301.1 at 5043.511 kb on - strand, within Xcc-8004.5301.1 at 5043.630 kb on + strand, within Xcc-8004.5301.1 at 5043.630 kb on + strand, within Xcc-8004.5301.1 at 5043.700 kb on + strand, within Xcc-8004.5301.1 at 5043.727 kb on - strand, within Xcc-8004.5301.1 at 5043.751 kb on - strand, within Xcc-8004.5301.1 at 5043.751 kb on - strand, within Xcc-8004.5301.1 at 5044.032 kb on - strand at 5044.218 kb on + strand at 5044.392 kb on + strand, within Xcc-8004.5302.1 at 5044.392 kb on + strand, within Xcc-8004.5302.1 at 5044.471 kb on + strand, within Xcc-8004.5302.1 at 5044.471 kb on + strand, within Xcc-8004.5302.1 at 5044.507 kb on - strand, within Xcc-8004.5302.1 at 5044.507 kb on - strand, within Xcc-8004.5302.1 at 5044.507 kb on - strand, within Xcc-8004.5302.1 at 5044.709 kb on + strand, within Xcc-8004.5302.1 at 5044.709 kb on + strand, within Xcc-8004.5302.1 at 5044.764 kb on - strand, within Xcc-8004.5302.1 at 5044.859 kb on - strand, within Xcc-8004.5302.1 at 5045.013 kb on - strand at 5045.125 kb on + strand at 5045.126 kb on - strand at 5045.308 kb on + strand, within Xcc-8004.5303.1 at 5045.494 kb on + strand, within Xcc-8004.5303.1 at 5045.495 kb on - strand, within Xcc-8004.5303.1 at 5045.525 kb on + strand, within Xcc-8004.5303.1 at 5045.525 kb on + strand, within Xcc-8004.5303.1 at 5045.994 kb on + strand, within Xcc-8004.5303.1 at 5045.994 kb on + strand, within Xcc-8004.5303.1 at 5045.994 kb on + strand, within Xcc-8004.5303.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 5,043,344 + Xcc-8004.5301.1 0.17 +1.1 5,043,344 + Xcc-8004.5301.1 0.17 -0.2 5,043,361 + Xcc-8004.5301.1 0.20 -1.1 5,043,487 - Xcc-8004.5301.1 0.37 -0.4 5,043,489 + Xcc-8004.5301.1 0.38 +1.4 5,043,489 + Xcc-8004.5301.1 0.38 +1.0 5,043,489 + Xcc-8004.5301.1 0.38 +0.7 5,043,490 - Xcc-8004.5301.1 0.38 +0.5 5,043,490 - Xcc-8004.5301.1 0.38 -1.6 5,043,510 + Xcc-8004.5301.1 0.40 -0.8 5,043,510 + Xcc-8004.5301.1 0.40 -0.3 5,043,511 - Xcc-8004.5301.1 0.41 -1.0 5,043,630 + Xcc-8004.5301.1 0.57 -0.9 5,043,630 + Xcc-8004.5301.1 0.57 -1.7 5,043,700 + Xcc-8004.5301.1 0.67 -0.1 5,043,727 - Xcc-8004.5301.1 0.71 +0.4 5,043,751 - Xcc-8004.5301.1 0.74 +0.7 5,043,751 - Xcc-8004.5301.1 0.74 -0.2 5,044,032 - -1.5 5,044,218 + -0.6 5,044,392 + Xcc-8004.5302.1 0.15 -1.2 5,044,392 + Xcc-8004.5302.1 0.15 +1.6 5,044,471 + Xcc-8004.5302.1 0.26 +0.5 5,044,471 + Xcc-8004.5302.1 0.26 +1.0 5,044,507 - Xcc-8004.5302.1 0.31 +1.0 5,044,507 - Xcc-8004.5302.1 0.31 -2.2 5,044,507 - Xcc-8004.5302.1 0.31 +1.6 5,044,709 + Xcc-8004.5302.1 0.59 -0.2 5,044,709 + Xcc-8004.5302.1 0.59 +1.9 5,044,764 - Xcc-8004.5302.1 0.67 +1.6 5,044,859 - Xcc-8004.5302.1 0.81 -0.1 5,045,013 - +1.4 5,045,125 + -0.5 5,045,126 - +0.0 5,045,308 + Xcc-8004.5303.1 0.22 -0.7 5,045,494 + Xcc-8004.5303.1 0.35 -1.2 5,045,495 - Xcc-8004.5303.1 0.35 +0.2 5,045,525 + Xcc-8004.5303.1 0.37 +2.4 5,045,525 + Xcc-8004.5303.1 0.37 -0.6 5,045,994 + Xcc-8004.5303.1 0.69 +1.1 5,045,994 + Xcc-8004.5303.1 0.69 -0.2 5,045,994 + Xcc-8004.5303.1 0.69 +1.0
Or see this region's nucleotide sequence