Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5062.1 and Xcc-8004.5063.1 are separated by 106 nucleotides Xcc-8004.5063.1 and Xcc-8004.5064.1 are separated by 208 nucleotides Xcc-8004.5064.1 and Xcc-8004.5065.1 are separated by 119 nucleotides
Xcc-8004.5062.1: Xcc-8004.5062.1 - Integral membrane protein, at 4,797,927 to 4,798,970
Xcc-8004.5062.1
Xcc-8004.5063.1: Xcc-8004.5063.1 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 4,799,077 to 4,801,785
Xcc-8004.5063.1
Xcc-8004.5064.1: Xcc-8004.5064.1 - hypothetical protein, at 4,801,994 to 4,802,086
Xcc-8004.5064.1
Xcc-8004.5065.1: Xcc-8004.5065.1 - Mg/Co/Ni transporter MgtE / CBS domain, at 4,802,206 to 4,803,573
Xcc-8004.5065.1
Position (kb) 4799
4800
4801
4802 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4798.084 kb on + strand, within Xcc-8004.5062.1 at 4798.084 kb on + strand, within Xcc-8004.5062.1 at 4798.084 kb on + strand, within Xcc-8004.5062.1 at 4798.085 kb on - strand, within Xcc-8004.5062.1 at 4798.141 kb on + strand, within Xcc-8004.5062.1 at 4798.142 kb on - strand, within Xcc-8004.5062.1 at 4798.142 kb on - strand, within Xcc-8004.5062.1 at 4798.142 kb on - strand, within Xcc-8004.5062.1 at 4798.158 kb on + strand, within Xcc-8004.5062.1 at 4798.158 kb on + strand, within Xcc-8004.5062.1 at 4798.158 kb on + strand, within Xcc-8004.5062.1 at 4798.159 kb on - strand, within Xcc-8004.5062.1 at 4798.159 kb on - strand, within Xcc-8004.5062.1 at 4798.270 kb on + strand, within Xcc-8004.5062.1 at 4798.270 kb on + strand, within Xcc-8004.5062.1 at 4798.369 kb on + strand, within Xcc-8004.5062.1 at 4798.369 kb on + strand, within Xcc-8004.5062.1 at 4798.369 kb on + strand, within Xcc-8004.5062.1 at 4798.369 kb on + strand, within Xcc-8004.5062.1 at 4798.369 kb on + strand, within Xcc-8004.5062.1 at 4798.370 kb on - strand, within Xcc-8004.5062.1 at 4798.370 kb on - strand, within Xcc-8004.5062.1 at 4798.370 kb on - strand, within Xcc-8004.5062.1 at 4798.609 kb on + strand, within Xcc-8004.5062.1 at 4798.870 kb on - strand at 4798.870 kb on - strand at 4799.101 kb on + strand at 4799.101 kb on + strand at 4799.101 kb on + strand at 4799.101 kb on + strand at 4799.101 kb on + strand at 4799.102 kb on - strand at 4799.102 kb on - strand at 4799.102 kb on - strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.103 kb on + strand at 4799.104 kb on - strand at 4799.104 kb on - strand at 4799.104 kb on - strand at 4799.104 kb on - strand at 4799.104 kb on - strand at 4799.104 kb on - strand at 4799.104 kb on - strand at 4799.104 kb on - strand at 4799.104 kb on - strand at 4799.104 kb on - strand at 4799.243 kb on + strand at 4799.244 kb on - strand at 4799.244 kb on - strand at 4799.244 kb on - strand at 4799.244 kb on - strand at 4799.315 kb on + strand at 4799.316 kb on - strand at 4799.316 kb on - strand at 4799.414 kb on + strand, within Xcc-8004.5063.1 at 4799.825 kb on + strand, within Xcc-8004.5063.1 at 4799.825 kb on + strand, within Xcc-8004.5063.1 at 4799.826 kb on - strand, within Xcc-8004.5063.1 at 4800.281 kb on + strand, within Xcc-8004.5063.1 at 4800.485 kb on + strand, within Xcc-8004.5063.1 at 4800.485 kb on + strand, within Xcc-8004.5063.1 at 4800.485 kb on + strand, within Xcc-8004.5063.1 at 4800.485 kb on + strand, within Xcc-8004.5063.1 at 4800.485 kb on + strand, within Xcc-8004.5063.1 at 4800.485 kb on + strand, within Xcc-8004.5063.1 at 4800.485 kb on + strand, within Xcc-8004.5063.1 at 4800.486 kb on - strand, within Xcc-8004.5063.1 at 4800.486 kb on - strand, within Xcc-8004.5063.1 at 4800.486 kb on - strand, within Xcc-8004.5063.1 at 4800.708 kb on - strand, within Xcc-8004.5063.1 at 4800.906 kb on + strand, within Xcc-8004.5063.1 at 4800.907 kb on - strand, within Xcc-8004.5063.1 at 4800.995 kb on + strand, within Xcc-8004.5063.1 at 4800.995 kb on + strand, within Xcc-8004.5063.1 at 4800.995 kb on + strand, within Xcc-8004.5063.1 at 4800.995 kb on + strand, within Xcc-8004.5063.1 at 4800.995 kb on + strand, within Xcc-8004.5063.1 at 4800.995 kb on + strand, within Xcc-8004.5063.1 at 4800.995 kb on + strand, within Xcc-8004.5063.1 at 4800.995 kb on + strand, within Xcc-8004.5063.1 at 4800.995 kb on + strand, within Xcc-8004.5063.1 at 4800.996 kb on - strand, within Xcc-8004.5063.1 at 4800.996 kb on - strand, within Xcc-8004.5063.1 at 4800.996 kb on - strand, within Xcc-8004.5063.1 at 4800.996 kb on - strand, within Xcc-8004.5063.1 at 4800.996 kb on - strand, within Xcc-8004.5063.1 at 4801.075 kb on + strand, within Xcc-8004.5063.1 at 4801.075 kb on + strand, within Xcc-8004.5063.1 at 4801.076 kb on - strand, within Xcc-8004.5063.1 at 4801.076 kb on - strand, within Xcc-8004.5063.1 at 4801.151 kb on + strand, within Xcc-8004.5063.1 at 4801.151 kb on + strand, within Xcc-8004.5063.1 at 4801.151 kb on + strand, within Xcc-8004.5063.1 at 4801.151 kb on + strand, within Xcc-8004.5063.1 at 4801.151 kb on + strand, within Xcc-8004.5063.1 at 4801.152 kb on - strand, within Xcc-8004.5063.1 at 4801.152 kb on - strand, within Xcc-8004.5063.1 at 4801.152 kb on - strand, within Xcc-8004.5063.1 at 4801.152 kb on - strand, within Xcc-8004.5063.1 at 4801.152 kb on - strand, within Xcc-8004.5063.1 at 4801.152 kb on - strand, within Xcc-8004.5063.1 at 4801.152 kb on - strand, within Xcc-8004.5063.1 at 4801.176 kb on - strand, within Xcc-8004.5063.1 at 4801.190 kb on + strand, within Xcc-8004.5063.1 at 4801.190 kb on + strand, within Xcc-8004.5063.1 at 4801.190 kb on + strand, within Xcc-8004.5063.1 at 4801.191 kb on - strand, within Xcc-8004.5063.1 at 4801.191 kb on - strand, within Xcc-8004.5063.1 at 4801.191 kb on - strand, within Xcc-8004.5063.1 at 4801.390 kb on + strand, within Xcc-8004.5063.1 at 4801.391 kb on - strand, within Xcc-8004.5063.1 at 4801.391 kb on - strand, within Xcc-8004.5063.1 at 4801.391 kb on - strand, within Xcc-8004.5063.1 at 4801.775 kb on + strand at 4801.775 kb on + strand at 4801.775 kb on + strand at 4801.775 kb on + strand at 4801.775 kb on + strand at 4801.775 kb on + strand at 4801.775 kb on + strand at 4801.776 kb on - strand at 4801.776 kb on - strand at 4801.776 kb on - strand at 4801.776 kb on - strand at 4801.776 kb on - strand at 4801.779 kb on + strand at 4801.779 kb on + strand at 4801.779 kb on + strand at 4801.779 kb on + strand at 4801.779 kb on + strand at 4801.780 kb on - strand at 4801.780 kb on - strand at 4801.780 kb on - strand at 4801.780 kb on - strand at 4801.780 kb on - strand at 4801.780 kb on - strand at 4801.780 kb on - strand at 4801.780 kb on - strand at 4801.815 kb on - strand at 4801.819 kb on + strand at 4801.819 kb on + strand at 4801.888 kb on + strand at 4801.995 kb on + strand at 4802.041 kb on - strand, within Xcc-8004.5064.1 at 4802.041 kb on - strand, within Xcc-8004.5064.1 at 4802.041 kb on - strand, within Xcc-8004.5064.1 at 4802.052 kb on + strand, within Xcc-8004.5064.1 at 4802.053 kb on - strand, within Xcc-8004.5064.1 at 4802.122 kb on + strand at 4802.123 kb on - strand at 4802.207 kb on + strand at 4802.207 kb on + strand at 4802.207 kb on + strand at 4802.207 kb on + strand at 4802.207 kb on + strand at 4802.207 kb on + strand at 4802.208 kb on - strand at 4802.208 kb on - strand at 4802.208 kb on - strand at 4802.208 kb on - strand at 4802.208 kb on - strand at 4802.208 kb on - strand at 4802.208 kb on - strand at 4802.249 kb on + strand at 4802.249 kb on + strand at 4802.249 kb on + strand at 4802.249 kb on + strand at 4802.249 kb on + strand at 4802.250 kb on - strand at 4802.250 kb on - strand at 4802.250 kb on - strand at 4802.435 kb on + strand, within Xcc-8004.5065.1 at 4802.435 kb on + strand, within Xcc-8004.5065.1 at 4802.435 kb on + strand, within Xcc-8004.5065.1 at 4802.435 kb on + strand, within Xcc-8004.5065.1 at 4802.436 kb on - strand, within Xcc-8004.5065.1 at 4802.436 kb on - strand, within Xcc-8004.5065.1 at 4802.777 kb on + strand, within Xcc-8004.5065.1 at 4802.777 kb on + strand, within Xcc-8004.5065.1 at 4802.777 kb on + strand, within Xcc-8004.5065.1 at 4802.777 kb on + strand, within Xcc-8004.5065.1 at 4802.778 kb on - strand, within Xcc-8004.5065.1 at 4802.778 kb on - strand, within Xcc-8004.5065.1 at 4802.778 kb on - strand, within Xcc-8004.5065.1 at 4802.778 kb on - strand, within Xcc-8004.5065.1 at 4802.778 kb on - strand, within Xcc-8004.5065.1 at 4802.779 kb on - strand, within Xcc-8004.5065.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 4,798,084 + Xcc-8004.5062.1 0.15 +1.6 4,798,084 + Xcc-8004.5062.1 0.15 +0.2 4,798,084 + Xcc-8004.5062.1 0.15 -0.3 4,798,085 - Xcc-8004.5062.1 0.15 -0.4 4,798,141 + Xcc-8004.5062.1 0.20 +0.1 4,798,142 - Xcc-8004.5062.1 0.21 -0.6 4,798,142 - Xcc-8004.5062.1 0.21 -0.7 4,798,142 - Xcc-8004.5062.1 0.21 -0.5 4,798,158 + Xcc-8004.5062.1 0.22 +2.3 4,798,158 + Xcc-8004.5062.1 0.22 +0.0 4,798,158 + Xcc-8004.5062.1 0.22 +0.6 4,798,159 - Xcc-8004.5062.1 0.22 +0.2 4,798,159 - Xcc-8004.5062.1 0.22 +0.5 4,798,270 + Xcc-8004.5062.1 0.33 +1.2 4,798,270 + Xcc-8004.5062.1 0.33 -1.4 4,798,369 + Xcc-8004.5062.1 0.42 +2.2 4,798,369 + Xcc-8004.5062.1 0.42 -1.1 4,798,369 + Xcc-8004.5062.1 0.42 -0.8 4,798,369 + Xcc-8004.5062.1 0.42 +0.6 4,798,369 + Xcc-8004.5062.1 0.42 -0.8 4,798,370 - Xcc-8004.5062.1 0.42 +1.2 4,798,370 - Xcc-8004.5062.1 0.42 -1.4 4,798,370 - Xcc-8004.5062.1 0.42 -0.1 4,798,609 + Xcc-8004.5062.1 0.65 +0.4 4,798,870 - +0.6 4,798,870 - +0.9 4,799,101 + +1.6 4,799,101 + +1.4 4,799,101 + +3.3 4,799,101 + -0.4 4,799,101 + +2.1 4,799,102 - +0.5 4,799,102 - +1.1 4,799,102 - -1.2 4,799,103 + +0.1 4,799,103 + +0.1 4,799,103 + +0.4 4,799,103 + +0.8 4,799,103 + -2.1 4,799,103 + -2.8 4,799,103 + -0.3 4,799,103 + +1.1 4,799,103 + -0.8 4,799,103 + -0.2 4,799,103 + -0.6 4,799,103 + +1.3 4,799,104 - -0.2 4,799,104 - +1.5 4,799,104 - -0.8 4,799,104 - -2.0 4,799,104 - +0.1 4,799,104 - -0.1 4,799,104 - -1.6 4,799,104 - -1.2 4,799,104 - -0.3 4,799,104 - +2.0 4,799,243 + +0.7 4,799,244 - -0.8 4,799,244 - +1.5 4,799,244 - -2.7 4,799,244 - -0.4 4,799,315 + -2.4 4,799,316 - -1.4 4,799,316 - +0.1 4,799,414 + Xcc-8004.5063.1 0.12 -1.7 4,799,825 + Xcc-8004.5063.1 0.28 +1.5 4,799,825 + Xcc-8004.5063.1 0.28 +0.7 4,799,826 - Xcc-8004.5063.1 0.28 -2.3 4,800,281 + Xcc-8004.5063.1 0.44 -1.9 4,800,485 + Xcc-8004.5063.1 0.52 +1.1 4,800,485 + Xcc-8004.5063.1 0.52 -1.4 4,800,485 + Xcc-8004.5063.1 0.52 +1.4 4,800,485 + Xcc-8004.5063.1 0.52 -0.0 4,800,485 + Xcc-8004.5063.1 0.52 -1.0 4,800,485 + Xcc-8004.5063.1 0.52 +0.5 4,800,485 + Xcc-8004.5063.1 0.52 -0.1 4,800,486 - Xcc-8004.5063.1 0.52 -0.3 4,800,486 - Xcc-8004.5063.1 0.52 -1.0 4,800,486 - Xcc-8004.5063.1 0.52 -1.7 4,800,708 - Xcc-8004.5063.1 0.60 +0.6 4,800,906 + Xcc-8004.5063.1 0.68 +0.4 4,800,907 - Xcc-8004.5063.1 0.68 +0.7 4,800,995 + Xcc-8004.5063.1 0.71 +1.1 4,800,995 + Xcc-8004.5063.1 0.71 -1.5 4,800,995 + Xcc-8004.5063.1 0.71 +0.1 4,800,995 + Xcc-8004.5063.1 0.71 -1.2 4,800,995 + Xcc-8004.5063.1 0.71 -0.3 4,800,995 + Xcc-8004.5063.1 0.71 -1.0 4,800,995 + Xcc-8004.5063.1 0.71 -3.6 4,800,995 + Xcc-8004.5063.1 0.71 -0.8 4,800,995 + Xcc-8004.5063.1 0.71 -2.9 4,800,996 - Xcc-8004.5063.1 0.71 +0.4 4,800,996 - Xcc-8004.5063.1 0.71 -0.1 4,800,996 - Xcc-8004.5063.1 0.71 -2.2 4,800,996 - Xcc-8004.5063.1 0.71 +0.1 4,800,996 - Xcc-8004.5063.1 0.71 +1.5 4,801,075 + Xcc-8004.5063.1 0.74 -1.6 4,801,075 + Xcc-8004.5063.1 0.74 -1.3 4,801,076 - Xcc-8004.5063.1 0.74 +0.6 4,801,076 - Xcc-8004.5063.1 0.74 -0.6 4,801,151 + Xcc-8004.5063.1 0.77 -0.5 4,801,151 + Xcc-8004.5063.1 0.77 -0.8 4,801,151 + Xcc-8004.5063.1 0.77 -0.9 4,801,151 + Xcc-8004.5063.1 0.77 -1.2 4,801,151 + Xcc-8004.5063.1 0.77 -0.8 4,801,152 - Xcc-8004.5063.1 0.77 +0.6 4,801,152 - Xcc-8004.5063.1 0.77 -0.9 4,801,152 - Xcc-8004.5063.1 0.77 +2.3 4,801,152 - Xcc-8004.5063.1 0.77 -0.0 4,801,152 - Xcc-8004.5063.1 0.77 +0.8 4,801,152 - Xcc-8004.5063.1 0.77 -1.0 4,801,152 - Xcc-8004.5063.1 0.77 +0.4 4,801,176 - Xcc-8004.5063.1 0.77 +0.5 4,801,190 + Xcc-8004.5063.1 0.78 +1.0 4,801,190 + Xcc-8004.5063.1 0.78 -0.5 4,801,190 + Xcc-8004.5063.1 0.78 +0.1 4,801,191 - Xcc-8004.5063.1 0.78 -0.5 4,801,191 - Xcc-8004.5063.1 0.78 -0.1 4,801,191 - Xcc-8004.5063.1 0.78 -3.0 4,801,390 + Xcc-8004.5063.1 0.85 -1.1 4,801,391 - Xcc-8004.5063.1 0.85 +2.0 4,801,391 - Xcc-8004.5063.1 0.85 -0.6 4,801,391 - Xcc-8004.5063.1 0.85 +1.5 4,801,775 + +0.1 4,801,775 + -0.4 4,801,775 + +0.3 4,801,775 + -0.6 4,801,775 + +0.6 4,801,775 + +0.1 4,801,775 + -1.5 4,801,776 - -2.1 4,801,776 - +0.8 4,801,776 - -0.9 4,801,776 - -1.3 4,801,776 - -0.9 4,801,779 + -0.0 4,801,779 + -0.7 4,801,779 + +0.4 4,801,779 + +1.3 4,801,779 + -3.1 4,801,780 - +0.5 4,801,780 - +0.4 4,801,780 - -1.0 4,801,780 - +0.4 4,801,780 - -0.6 4,801,780 - -0.8 4,801,780 - -2.3 4,801,780 - +1.7 4,801,815 - +1.0 4,801,819 + +1.1 4,801,819 + -1.0 4,801,888 + -0.3 4,801,995 + +0.8 4,802,041 - Xcc-8004.5064.1 0.51 -0.6 4,802,041 - Xcc-8004.5064.1 0.51 +1.2 4,802,041 - Xcc-8004.5064.1 0.51 +0.9 4,802,052 + Xcc-8004.5064.1 0.62 +1.4 4,802,053 - Xcc-8004.5064.1 0.63 -0.5 4,802,122 + +0.3 4,802,123 - -0.3 4,802,207 + -0.4 4,802,207 + +0.3 4,802,207 + -0.3 4,802,207 + -0.6 4,802,207 + -0.8 4,802,207 + -0.1 4,802,208 - +1.6 4,802,208 - +0.6 4,802,208 - +0.7 4,802,208 - -0.3 4,802,208 - -0.2 4,802,208 - +1.3 4,802,208 - +1.0 4,802,249 + +0.7 4,802,249 + +0.2 4,802,249 + -0.6 4,802,249 + -1.2 4,802,249 + -0.5 4,802,250 - -1.3 4,802,250 - +0.9 4,802,250 - -0.1 4,802,435 + Xcc-8004.5065.1 0.17 -0.0 4,802,435 + Xcc-8004.5065.1 0.17 +1.4 4,802,435 + Xcc-8004.5065.1 0.17 +0.1 4,802,435 + Xcc-8004.5065.1 0.17 +1.4 4,802,436 - Xcc-8004.5065.1 0.17 +1.7 4,802,436 - Xcc-8004.5065.1 0.17 -0.5 4,802,777 + Xcc-8004.5065.1 0.42 +1.1 4,802,777 + Xcc-8004.5065.1 0.42 -1.6 4,802,777 + Xcc-8004.5065.1 0.42 +1.0 4,802,777 + Xcc-8004.5065.1 0.42 -0.6 4,802,778 - Xcc-8004.5065.1 0.42 +0.1 4,802,778 - Xcc-8004.5065.1 0.42 -0.8 4,802,778 - Xcc-8004.5065.1 0.42 -1.4 4,802,778 - Xcc-8004.5065.1 0.42 -0.2 4,802,778 - Xcc-8004.5065.1 0.42 +0.1 4,802,779 - Xcc-8004.5065.1 0.42 +1.0
Or see this region's nucleotide sequence