Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4930.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4929.1 and Xcc-8004.4930.1 are separated by 57 nucleotidesXcc-8004.4930.1 and Xcc-8004.4931.1 are separated by 68 nucleotides Xcc-8004.4929.1: Xcc-8004.4929.1 - hypothetical protein, at 4,686,556 to 4,687,677 Xcc-8004.4929.1 Xcc-8004.4930.1: Xcc-8004.4930.1 - RNA-2',3'-PO4:RNA-5'-OH ligase, at 4,687,735 to 4,688,955 Xcc-8004.4930.1 Xcc-8004.4931.1: Xcc-8004.4931.1 - FIG01210460: hypothetical protein, at 4,689,024 to 4,689,953 Xcc-8004.4931.1 Position (kb) 4687 4688 4689Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4686.840 kb on - strand, within Xcc-8004.4929.1at 4686.840 kb on - strand, within Xcc-8004.4929.1at 4686.865 kb on + strand, within Xcc-8004.4929.1at 4687.271 kb on - strand, within Xcc-8004.4929.1at 4687.362 kb on + strand, within Xcc-8004.4929.1at 4687.362 kb on + strand, within Xcc-8004.4929.1at 4687.363 kb on - strand, within Xcc-8004.4929.1at 4687.363 kb on - strand, within Xcc-8004.4929.1at 4687.363 kb on - strand, within Xcc-8004.4929.1at 4687.750 kb on + strandat 4687.750 kb on + strandat 4687.857 kb on - strand, within Xcc-8004.4930.1at 4688.103 kb on + strand, within Xcc-8004.4930.1at 4688.194 kb on - strand, within Xcc-8004.4930.1at 4688.329 kb on + strand, within Xcc-8004.4930.1at 4688.329 kb on + strand, within Xcc-8004.4930.1at 4688.329 kb on + strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.437 kb on + strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.467 kb on + strand, within Xcc-8004.4930.1at 4688.468 kb on - strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.576 kb on - strand, within Xcc-8004.4930.1at 4688.576 kb on - strand, within Xcc-8004.4930.1at 4688.576 kb on - strand, within Xcc-8004.4930.1at 4688.576 kb on - strand, within Xcc-8004.4930.1at 4688.680 kb on - strand, within Xcc-8004.4930.1at 4688.685 kb on + strand, within Xcc-8004.4930.1at 4688.685 kb on + strand, within Xcc-8004.4930.1at 4688.685 kb on + strand, within Xcc-8004.4930.1at 4688.686 kb on - strand, within Xcc-8004.4930.1at 4688.686 kb on - strand, within Xcc-8004.4930.1at 4688.686 kb on - strand, within Xcc-8004.4930.1at 4688.686 kb on - strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.690 kb on - strand, within Xcc-8004.4930.1at 4688.690 kb on - strand, within Xcc-8004.4930.1at 4688.690 kb on - strand, within Xcc-8004.4930.1at 4688.866 kb on + strandat 4688.866 kb on + strandat 4688.866 kb on + strandat 4688.866 kb on + strandat 4688.866 kb on + strandat 4689.120 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.389 kb on - strand, within Xcc-8004.4931.1at 4689.412 kb on - strand, within Xcc-8004.4931.1at 4689.441 kb on + strand, within Xcc-8004.4931.1at 4689.441 kb on + strand, within Xcc-8004.4931.1at 4689.442 kb on - strand, within Xcc-8004.4931.1at 4689.442 kb on - strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.462 kb on + strand, within Xcc-8004.4931.1at 4689.462 kb on + strand, within Xcc-8004.4931.1at 4689.463 kb on - strand, within Xcc-8004.4931.1at 4689.463 kb on - strand, within Xcc-8004.4931.1at 4689.474 kb on + strand, within Xcc-8004.4931.1at 4689.474 kb on + strand, within Xcc-8004.4931.1at 4689.487 kb on - strand, within Xcc-8004.4931.1at 4689.660 kb on + strand, within Xcc-8004.4931.1at 4689.660 kb on + strand, within Xcc-8004.4931.1at 4689.681 kb on + strand, within Xcc-8004.4931.1at 4689.723 kb on + strand, within Xcc-8004.4931.1at 4689.723 kb on + strand, within Xcc-8004.4931.1at 4689.723 kb on + strand, within Xcc-8004.4931.1at 4689.724 kb on - strand, within Xcc-8004.4931.1at 4689.724 kb on - strand, within Xcc-8004.4931.1at 4689.724 kb on - strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.730 kb on - strand, within Xcc-8004.4931.1at 4689.730 kb on - strand, within Xcc-8004.4931.1at 4689.739 kb on - strand, within Xcc-8004.4931.1at 4689.750 kb on + strand, within Xcc-8004.4931.1at 4689.751 kb on - strand, within Xcc-8004.4931.1at 4689.952 kb on - strandat 4689.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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4,686,840 - Xcc-8004.4929.1 0.25 -1.9
4,686,840 - Xcc-8004.4929.1 0.25 +1.3
4,686,865 + Xcc-8004.4929.1 0.28 +2.5
4,687,271 - Xcc-8004.4929.1 0.64 +1.0
4,687,362 + Xcc-8004.4929.1 0.72 +0.3
4,687,362 + Xcc-8004.4929.1 0.72 +1.8
4,687,363 - Xcc-8004.4929.1 0.72 -0.2
4,687,363 - Xcc-8004.4929.1 0.72 -1.2
4,687,363 - Xcc-8004.4929.1 0.72 +0.0
4,687,750 + +1.3
4,687,750 + +0.4
4,687,857 - Xcc-8004.4930.1 0.10 +0.4
4,688,103 + Xcc-8004.4930.1 0.30 +0.4
4,688,194 - Xcc-8004.4930.1 0.38 +0.6
4,688,329 + Xcc-8004.4930.1 0.49 -3.6
4,688,329 + Xcc-8004.4930.1 0.49 +0.2
4,688,329 + Xcc-8004.4930.1 0.49 -0.0
4,688,330 - Xcc-8004.4930.1 0.49 -3.3
4,688,330 - Xcc-8004.4930.1 0.49 -1.5
4,688,330 - Xcc-8004.4930.1 0.49 +0.2
4,688,330 - Xcc-8004.4930.1 0.49 -0.3
4,688,330 - Xcc-8004.4930.1 0.49 -0.4
4,688,330 - Xcc-8004.4930.1 0.49 +1.3
4,688,437 + Xcc-8004.4930.1 0.57 +1.3
4,688,438 - Xcc-8004.4930.1 0.58 -0.6
4,688,438 - Xcc-8004.4930.1 0.58 -0.8
4,688,438 - Xcc-8004.4930.1 0.58 +0.1
4,688,438 - Xcc-8004.4930.1 0.58 -1.1
4,688,438 - Xcc-8004.4930.1 0.58 +0.2
4,688,438 - Xcc-8004.4930.1 0.58 +1.4
4,688,467 + Xcc-8004.4930.1 0.60 -0.5
4,688,468 - Xcc-8004.4930.1 0.60 +0.8
4,688,575 + Xcc-8004.4930.1 0.69 -1.3
4,688,575 + Xcc-8004.4930.1 0.69 +0.3
4,688,575 + Xcc-8004.4930.1 0.69 -0.5
4,688,575 + Xcc-8004.4930.1 0.69 +4.2
4,688,575 + Xcc-8004.4930.1 0.69 -0.2
4,688,575 + Xcc-8004.4930.1 0.69 +0.5
4,688,576 - Xcc-8004.4930.1 0.69 +2.7
4,688,576 - Xcc-8004.4930.1 0.69 +0.8
4,688,576 - Xcc-8004.4930.1 0.69 +2.4
4,688,576 - Xcc-8004.4930.1 0.69 +2.0
4,688,680 - Xcc-8004.4930.1 0.77 +0.6
4,688,685 + Xcc-8004.4930.1 0.78 +0.8
4,688,685 + Xcc-8004.4930.1 0.78 -0.8
4,688,685 + Xcc-8004.4930.1 0.78 -1.2
4,688,686 - Xcc-8004.4930.1 0.78 +0.2
4,688,686 - Xcc-8004.4930.1 0.78 +0.1
4,688,686 - Xcc-8004.4930.1 0.78 -1.3
4,688,686 - Xcc-8004.4930.1 0.78 +1.8
4,688,689 + Xcc-8004.4930.1 0.78 +1.6
4,688,689 + Xcc-8004.4930.1 0.78 +2.2
4,688,689 + Xcc-8004.4930.1 0.78 -1.1
4,688,689 + Xcc-8004.4930.1 0.78 +0.2
4,688,689 + Xcc-8004.4930.1 0.78 +2.5
4,688,689 + Xcc-8004.4930.1 0.78 -0.9
4,688,689 + Xcc-8004.4930.1 0.78 -2.4
4,688,690 - Xcc-8004.4930.1 0.78 -0.2
4,688,690 - Xcc-8004.4930.1 0.78 +0.5
4,688,690 - Xcc-8004.4930.1 0.78 +0.4
4,688,866 + -0.2
4,688,866 + -1.0
4,688,866 + +1.7
4,688,866 + -2.7
4,688,866 + +0.5
4,689,120 + Xcc-8004.4931.1 0.10 -1.3
4,689,165 + Xcc-8004.4931.1 0.15 +1.1
4,689,165 + Xcc-8004.4931.1 0.15 -1.0
4,689,165 + Xcc-8004.4931.1 0.15 +0.7
4,689,165 + Xcc-8004.4931.1 0.15 -2.7
4,689,165 + Xcc-8004.4931.1 0.15 +0.6
4,689,165 + Xcc-8004.4931.1 0.15 +1.9
4,689,165 + Xcc-8004.4931.1 0.15 +0.0
4,689,166 - Xcc-8004.4931.1 0.15 -0.5
4,689,166 - Xcc-8004.4931.1 0.15 -1.9
4,689,166 - Xcc-8004.4931.1 0.15 -2.5
4,689,166 - Xcc-8004.4931.1 0.15 +2.0
4,689,166 - Xcc-8004.4931.1 0.15 +0.5
4,689,166 - Xcc-8004.4931.1 0.15 +1.3
4,689,389 - Xcc-8004.4931.1 0.39 +1.3
4,689,412 - Xcc-8004.4931.1 0.42 -0.3
4,689,441 + Xcc-8004.4931.1 0.45 +0.4
4,689,441 + Xcc-8004.4931.1 0.45 -0.1
4,689,442 - Xcc-8004.4931.1 0.45 +1.0
4,689,442 - Xcc-8004.4931.1 0.45 -0.2
4,689,444 + Xcc-8004.4931.1 0.45 +1.7
4,689,444 + Xcc-8004.4931.1 0.45 +2.3
4,689,444 + Xcc-8004.4931.1 0.45 -0.6
4,689,444 + Xcc-8004.4931.1 0.45 +1.0
4,689,444 + Xcc-8004.4931.1 0.45 -0.0
4,689,444 + Xcc-8004.4931.1 0.45 -1.2
4,689,444 + Xcc-8004.4931.1 0.45 +1.8
4,689,445 - Xcc-8004.4931.1 0.45 +1.1
4,689,445 - Xcc-8004.4931.1 0.45 +0.3
4,689,445 - Xcc-8004.4931.1 0.45 +0.9
4,689,445 - Xcc-8004.4931.1 0.45 -0.7
4,689,445 - Xcc-8004.4931.1 0.45 -0.9
4,689,445 - Xcc-8004.4931.1 0.45 -1.1
4,689,445 - Xcc-8004.4931.1 0.45 -0.6
4,689,462 + Xcc-8004.4931.1 0.47 +1.9
4,689,462 + Xcc-8004.4931.1 0.47 +0.2
4,689,463 - Xcc-8004.4931.1 0.47 +1.6
4,689,463 - Xcc-8004.4931.1 0.47 +0.4
4,689,474 + Xcc-8004.4931.1 0.48 +1.0
4,689,474 + Xcc-8004.4931.1 0.48 -3.2
4,689,487 - Xcc-8004.4931.1 0.50 +2.4
4,689,660 + Xcc-8004.4931.1 0.68 -0.4
4,689,660 + Xcc-8004.4931.1 0.68 +0.5
4,689,681 + Xcc-8004.4931.1 0.71 +0.1
4,689,723 + Xcc-8004.4931.1 0.75 -0.5
4,689,723 + Xcc-8004.4931.1 0.75 +0.1
4,689,723 + Xcc-8004.4931.1 0.75 +0.6
4,689,724 - Xcc-8004.4931.1 0.75 -0.2
4,689,724 - Xcc-8004.4931.1 0.75 -1.6
4,689,724 - Xcc-8004.4931.1 0.75 +1.1
4,689,729 + Xcc-8004.4931.1 0.76 -0.3
4,689,729 + Xcc-8004.4931.1 0.76 +0.7
4,689,729 + Xcc-8004.4931.1 0.76 -2.5
4,689,729 + Xcc-8004.4931.1 0.76 -0.5
4,689,730 - Xcc-8004.4931.1 0.76 +1.4
4,689,730 - Xcc-8004.4931.1 0.76 +0.6
4,689,739 - Xcc-8004.4931.1 0.77 +2.9
4,689,750 + Xcc-8004.4931.1 0.78 +0.2
4,689,751 - Xcc-8004.4931.1 0.78 -0.9
4,689,952 - +0.1
4,689,952 - +1.8

Or see this region's nucleotide sequence