Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3724.1 and Xcc-8004.3725.1 overlap by 16 nucleotides Xcc-8004.3725.1 and Xcc-8004.3726.1 are separated by 9 nucleotides Xcc-8004.3726.1 and Xcc-8004.3727.1 are separated by 1 nucleotides Xcc-8004.3727.1 and Xcc-8004.3728.1 are separated by 31 nucleotides
Xcc-8004.3724.1: Xcc-8004.3724.1 - Type III secretion cytoplasmic protein (YscL), at 3,602,383 to 3,603,084
Xcc-8004.3724.1
Xcc-8004.3725.1: Xcc-8004.3725.1 - HrpB4 protein, at 3,603,069 to 3,603,698
Xcc-8004.3725.1
Xcc-8004.3726.1: Xcc-8004.3726.1 - Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ), at 3,603,708 to 3,604,472
Xcc-8004.3726.1
Xcc-8004.3727.1: Xcc-8004.3727.1 - hypothetical protein, at 3,604,474 to 3,604,866
Xcc-8004.3727.1
Xcc-8004.3728.1: Xcc-8004.3728.1 - hypothetical protein, at 3,604,898 to 3,605,353
Xcc-8004.3728.1
Position (kb) 3603
3604
3605 Strain fitness (log2 ratio) -1
0
1
2
3 at 3602.840 kb on + strand, within Xcc-8004.3724.1 at 3603.328 kb on + strand, within Xcc-8004.3725.1 at 3603.542 kb on + strand, within Xcc-8004.3725.1 at 3603.787 kb on + strand, within Xcc-8004.3726.1 at 3603.788 kb on - strand, within Xcc-8004.3726.1 at 3603.934 kb on + strand, within Xcc-8004.3726.1 at 3604.151 kb on - strand, within Xcc-8004.3726.1 at 3604.271 kb on - strand, within Xcc-8004.3726.1 at 3604.403 kb on - strand at 3604.456 kb on + strand at 3604.475 kb on + strand at 3604.912 kb on - strand at 3604.983 kb on + strand, within Xcc-8004.3728.1 at 3605.209 kb on + strand, within Xcc-8004.3728.1 at 3605.237 kb on + strand, within Xcc-8004.3728.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 3,602,840 + Xcc-8004.3724.1 0.65 +2.1 3,603,328 + Xcc-8004.3725.1 0.41 +1.3 3,603,542 + Xcc-8004.3725.1 0.75 -0.8 3,603,787 + Xcc-8004.3726.1 0.10 -0.7 3,603,788 - Xcc-8004.3726.1 0.10 +0.7 3,603,934 + Xcc-8004.3726.1 0.30 -0.8 3,604,151 - Xcc-8004.3726.1 0.58 +2.8 3,604,271 - Xcc-8004.3726.1 0.74 +2.5 3,604,403 - +0.7 3,604,456 + +0.4 3,604,475 + -0.4 3,604,912 - +2.1 3,604,983 + Xcc-8004.3728.1 0.19 -0.0 3,605,209 + Xcc-8004.3728.1 0.68 +2.4 3,605,237 + Xcc-8004.3728.1 0.74 -0.6
Or see this region's nucleotide sequence