Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.217.1 and Xcc-8004.218.1 overlap by 11 nucleotides Xcc-8004.218.1 and Xcc-8004.219.1 are separated by 60 nucleotides Xcc-8004.219.1 and Xcc-8004.220.1 overlap by 4 nucleotides
Xcc-8004.217.1: Xcc-8004.217.1 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 214,033 to 215,262
Xcc-8004.217.1
Xcc-8004.218.1: Xcc-8004.218.1 - FIG01210778: hypothetical protein, at 215,252 to 215,644
Xcc-8004.218.1
Xcc-8004.219.1: Xcc-8004.219.1 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 215,705 to 216,442
Xcc-8004.219.1
Xcc-8004.220.1: Xcc-8004.220.1 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation, at 216,439 to 217,911
Xcc-8004.220.1
Position (kb) 215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 214.388 kb on - strand, within Xcc-8004.217.1 at 214.426 kb on + strand, within Xcc-8004.217.1 at 214.426 kb on + strand, within Xcc-8004.217.1 at 214.426 kb on + strand, within Xcc-8004.217.1 at 214.468 kb on + strand, within Xcc-8004.217.1 at 214.468 kb on + strand, within Xcc-8004.217.1 at 214.468 kb on + strand, within Xcc-8004.217.1 at 214.468 kb on + strand, within Xcc-8004.217.1 at 214.469 kb on - strand, within Xcc-8004.217.1 at 214.469 kb on - strand, within Xcc-8004.217.1 at 214.539 kb on + strand, within Xcc-8004.217.1 at 214.622 kb on - strand, within Xcc-8004.217.1 at 214.912 kb on + strand, within Xcc-8004.217.1 at 214.913 kb on - strand, within Xcc-8004.217.1 at 215.102 kb on - strand, within Xcc-8004.217.1 at 215.102 kb on - strand, within Xcc-8004.217.1 at 215.221 kb on + strand at 215.222 kb on - strand at 215.222 kb on - strand at 215.222 kb on - strand at 215.242 kb on + strand at 215.243 kb on - strand at 215.260 kb on + strand at 215.390 kb on + strand, within Xcc-8004.218.1 at 215.390 kb on + strand, within Xcc-8004.218.1 at 215.390 kb on + strand, within Xcc-8004.218.1 at 215.390 kb on + strand, within Xcc-8004.218.1 at 215.390 kb on + strand, within Xcc-8004.218.1 at 215.390 kb on + strand, within Xcc-8004.218.1 at 215.390 kb on + strand, within Xcc-8004.218.1 at 215.390 kb on + strand, within Xcc-8004.218.1 at 215.390 kb on + strand, within Xcc-8004.218.1 at 215.391 kb on - strand, within Xcc-8004.218.1 at 215.391 kb on - strand, within Xcc-8004.218.1 at 215.441 kb on + strand, within Xcc-8004.218.1 at 215.441 kb on + strand, within Xcc-8004.218.1 at 215.442 kb on - strand, within Xcc-8004.218.1 at 215.442 kb on - strand, within Xcc-8004.218.1 at 215.442 kb on - strand, within Xcc-8004.218.1 at 215.442 kb on - strand, within Xcc-8004.218.1 at 215.442 kb on - strand, within Xcc-8004.218.1 at 215.442 kb on - strand, within Xcc-8004.218.1 at 215.442 kb on - strand, within Xcc-8004.218.1 at 215.459 kb on + strand, within Xcc-8004.218.1 at 215.459 kb on + strand, within Xcc-8004.218.1 at 215.459 kb on + strand, within Xcc-8004.218.1 at 215.459 kb on + strand, within Xcc-8004.218.1 at 215.460 kb on - strand, within Xcc-8004.218.1 at 215.460 kb on - strand, within Xcc-8004.218.1 at 215.460 kb on - strand, within Xcc-8004.218.1 at 215.460 kb on - strand, within Xcc-8004.218.1 at 215.460 kb on - strand, within Xcc-8004.218.1 at 215.606 kb on + strand at 215.606 kb on + strand at 215.607 kb on - strand at 215.607 kb on - strand at 215.607 kb on - strand at 215.607 kb on - strand at 215.607 kb on - strand at 215.939 kb on + strand, within Xcc-8004.219.1 at 215.939 kb on + strand, within Xcc-8004.219.1 at 215.939 kb on + strand, within Xcc-8004.219.1 at 215.940 kb on - strand, within Xcc-8004.219.1 at 215.940 kb on - strand, within Xcc-8004.219.1 at 215.940 kb on - strand, within Xcc-8004.219.1 at 215.940 kb on - strand, within Xcc-8004.219.1 at 215.940 kb on - strand, within Xcc-8004.219.1 at 216.031 kb on + strand, within Xcc-8004.219.1 at 216.032 kb on - strand, within Xcc-8004.219.1 at 216.302 kb on + strand, within Xcc-8004.219.1 at 216.303 kb on - strand, within Xcc-8004.219.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 214,388 - Xcc-8004.217.1 0.29 -1.3 214,426 + Xcc-8004.217.1 0.32 -0.9 214,426 + Xcc-8004.217.1 0.32 -1.2 214,426 + Xcc-8004.217.1 0.32 +3.0 214,468 + Xcc-8004.217.1 0.35 -1.2 214,468 + Xcc-8004.217.1 0.35 -2.3 214,468 + Xcc-8004.217.1 0.35 -1.9 214,468 + Xcc-8004.217.1 0.35 -2.5 214,469 - Xcc-8004.217.1 0.35 +1.5 214,469 - Xcc-8004.217.1 0.35 -0.0 214,539 + Xcc-8004.217.1 0.41 -2.0 214,622 - Xcc-8004.217.1 0.48 +1.7 214,912 + Xcc-8004.217.1 0.71 -0.5 214,913 - Xcc-8004.217.1 0.72 -0.3 215,102 - Xcc-8004.217.1 0.87 +3.0 215,102 - Xcc-8004.217.1 0.87 -2.0 215,221 + +1.5 215,222 - +1.0 215,222 - +0.3 215,222 - -0.8 215,242 + +0.5 215,243 - -1.2 215,260 + +1.0 215,390 + Xcc-8004.218.1 0.35 -0.6 215,390 + Xcc-8004.218.1 0.35 -0.7 215,390 + Xcc-8004.218.1 0.35 -1.2 215,390 + Xcc-8004.218.1 0.35 -1.0 215,390 + Xcc-8004.218.1 0.35 -0.4 215,390 + Xcc-8004.218.1 0.35 -0.9 215,390 + Xcc-8004.218.1 0.35 -0.6 215,390 + Xcc-8004.218.1 0.35 +2.0 215,390 + Xcc-8004.218.1 0.35 -1.9 215,391 - Xcc-8004.218.1 0.35 +2.0 215,391 - Xcc-8004.218.1 0.35 -0.1 215,441 + Xcc-8004.218.1 0.48 -2.4 215,441 + Xcc-8004.218.1 0.48 +0.8 215,442 - Xcc-8004.218.1 0.48 -0.7 215,442 - Xcc-8004.218.1 0.48 +1.2 215,442 - Xcc-8004.218.1 0.48 -1.0 215,442 - Xcc-8004.218.1 0.48 -0.6 215,442 - Xcc-8004.218.1 0.48 -0.2 215,442 - Xcc-8004.218.1 0.48 -1.1 215,442 - Xcc-8004.218.1 0.48 -0.1 215,459 + Xcc-8004.218.1 0.53 -1.5 215,459 + Xcc-8004.218.1 0.53 -0.6 215,459 + Xcc-8004.218.1 0.53 +1.8 215,459 + Xcc-8004.218.1 0.53 +1.8 215,460 - Xcc-8004.218.1 0.53 +0.4 215,460 - Xcc-8004.218.1 0.53 +0.8 215,460 - Xcc-8004.218.1 0.53 +0.9 215,460 - Xcc-8004.218.1 0.53 +0.4 215,460 - Xcc-8004.218.1 0.53 -0.2 215,606 + -0.5 215,606 + -0.4 215,607 - +0.2 215,607 - +0.1 215,607 - -0.7 215,607 - -0.9 215,607 - +2.0 215,939 + Xcc-8004.219.1 0.32 -3.2 215,939 + Xcc-8004.219.1 0.32 +0.9 215,939 + Xcc-8004.219.1 0.32 -0.3 215,940 - Xcc-8004.219.1 0.32 -1.0 215,940 - Xcc-8004.219.1 0.32 -1.2 215,940 - Xcc-8004.219.1 0.32 -1.6 215,940 - Xcc-8004.219.1 0.32 -0.9 215,940 - Xcc-8004.219.1 0.32 -0.8 216,031 + Xcc-8004.219.1 0.44 -2.5 216,032 - Xcc-8004.219.1 0.44 -1.3 216,302 + Xcc-8004.219.1 0.81 -1.5 216,303 - Xcc-8004.219.1 0.81 +0.3
Or see this region's nucleotide sequence