Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1203.1 and Xcc-8004.1204.1 are separated by 128 nucleotides Xcc-8004.1204.1 and Xcc-8004.1205.1 are separated by 18 nucleotides Xcc-8004.1205.1 and Xcc-8004.1206.1 are separated by 138 nucleotides
Xcc-8004.1203.1: Xcc-8004.1203.1 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 1,135,595 to 1,136,533
Xcc-8004.1203.1
Xcc-8004.1204.1: Xcc-8004.1204.1 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 1,136,662 to 1,138,803
Xcc-8004.1204.1
Xcc-8004.1205.1: Xcc-8004.1205.1 - hypothetical protein, at 1,138,822 to 1,139,202
Xcc-8004.1205.1
Xcc-8004.1206.1: Xcc-8004.1206.1 - D-galactarate dehydratase (EC 4.2.1.42), at 1,139,341 to 1,140,885
Xcc-8004.1206.1
Position (kb) 1136
1137
1138
1139 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.819 kb on - strand, within Xcc-8004.1203.1 at 1135.825 kb on - strand, within Xcc-8004.1203.1 at 1135.878 kb on + strand, within Xcc-8004.1203.1 at 1135.878 kb on + strand, within Xcc-8004.1203.1 at 1135.999 kb on + strand, within Xcc-8004.1203.1 at 1136.047 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.338 kb on - strand, within Xcc-8004.1203.1 at 1136.338 kb on - strand, within Xcc-8004.1203.1 at 1136.833 kb on - strand at 1136.951 kb on + strand, within Xcc-8004.1204.1 at 1136.952 kb on - strand, within Xcc-8004.1204.1 at 1137.175 kb on + strand, within Xcc-8004.1204.1 at 1137.317 kb on + strand, within Xcc-8004.1204.1 at 1137.318 kb on - strand, within Xcc-8004.1204.1 at 1137.991 kb on + strand, within Xcc-8004.1204.1 at 1137.991 kb on + strand, within Xcc-8004.1204.1 at 1138.650 kb on - strand at 1138.650 kb on - strand at 1138.919 kb on + strand, within Xcc-8004.1205.1 at 1138.920 kb on - strand, within Xcc-8004.1205.1 at 1138.971 kb on - strand, within Xcc-8004.1205.1 at 1138.971 kb on - strand, within Xcc-8004.1205.1 at 1138.985 kb on - strand, within Xcc-8004.1205.1 at 1139.121 kb on - strand, within Xcc-8004.1205.1 at 1139.153 kb on + strand, within Xcc-8004.1205.1 at 1139.185 kb on - strand at 1139.295 kb on - strand at 1139.381 kb on + strand at 1139.381 kb on + strand at 1139.381 kb on + strand at 1139.381 kb on + strand at 1139.382 kb on - strand at 1139.423 kb on - strand at 1139.433 kb on - strand at 1139.502 kb on + strand, within Xcc-8004.1206.1 at 1139.676 kb on - strand, within Xcc-8004.1206.1 at 1139.775 kb on + strand, within Xcc-8004.1206.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 1,135,818 + Xcc-8004.1203.1 0.24 +0.1 1,135,818 + Xcc-8004.1203.1 0.24 -0.6 1,135,818 + Xcc-8004.1203.1 0.24 +0.7 1,135,819 - Xcc-8004.1203.1 0.24 -0.9 1,135,825 - Xcc-8004.1203.1 0.24 +0.5 1,135,878 + Xcc-8004.1203.1 0.30 +0.1 1,135,878 + Xcc-8004.1203.1 0.30 -0.8 1,135,999 + Xcc-8004.1203.1 0.43 +0.4 1,136,047 + Xcc-8004.1203.1 0.48 +1.1 1,136,337 + Xcc-8004.1203.1 0.79 -0.8 1,136,337 + Xcc-8004.1203.1 0.79 +1.7 1,136,337 + Xcc-8004.1203.1 0.79 -0.3 1,136,337 + Xcc-8004.1203.1 0.79 -0.7 1,136,338 - Xcc-8004.1203.1 0.79 +1.1 1,136,338 - Xcc-8004.1203.1 0.79 -0.1 1,136,833 - +1.1 1,136,951 + Xcc-8004.1204.1 0.13 +0.1 1,136,952 - Xcc-8004.1204.1 0.14 +0.6 1,137,175 + Xcc-8004.1204.1 0.24 +0.5 1,137,317 + Xcc-8004.1204.1 0.31 +1.4 1,137,318 - Xcc-8004.1204.1 0.31 +0.6 1,137,991 + Xcc-8004.1204.1 0.62 -0.2 1,137,991 + Xcc-8004.1204.1 0.62 -2.0 1,138,650 - +0.1 1,138,650 - -0.3 1,138,919 + Xcc-8004.1205.1 0.25 +0.2 1,138,920 - Xcc-8004.1205.1 0.26 -2.7 1,138,971 - Xcc-8004.1205.1 0.39 -0.2 1,138,971 - Xcc-8004.1205.1 0.39 -2.5 1,138,985 - Xcc-8004.1205.1 0.43 -1.5 1,139,121 - Xcc-8004.1205.1 0.78 -2.8 1,139,153 + Xcc-8004.1205.1 0.87 -0.9 1,139,185 - -2.3 1,139,295 - -0.8 1,139,381 + +0.2 1,139,381 + -0.2 1,139,381 + -1.0 1,139,381 + -0.2 1,139,382 - +0.5 1,139,423 - -1.2 1,139,433 - +0.6 1,139,502 + Xcc-8004.1206.1 0.10 -0.2 1,139,676 - Xcc-8004.1206.1 0.22 -0.3 1,139,775 + Xcc-8004.1206.1 0.28 +0.7
Or see this region's nucleotide sequence