Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1099.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1098.1 and Xcc-8004.1099.1 are separated by 69 nucleotidesXcc-8004.1099.1 and Xcc-8004.1100.1 are separated by 35 nucleotidesXcc-8004.1100.1 and Xcc-8004.1101.1 overlap by 31 nucleotides Xcc-8004.1098.1: Xcc-8004.1098.1 - FIG01212099: hypothetical protein, at 1,045,828 to 1,046,376 Xcc-8004.1098.1 Xcc-8004.1099.1: Xcc-8004.1099.1 - Inner membrane protein of type IV secretion of T-DNA complex, VirB6, at 1,046,446 to 1,047,567 Xcc-8004.1099.1 Xcc-8004.1100.1: Xcc-8004.1100.1 - Type IV fimbrial biogenesis protein PilY1, at 1,047,603 to 1,047,707 Xcc-8004.1100.1 Xcc-8004.1101.1: Xcc-8004.1101.1 - Mobile element protein, at 1,047,677 to 1,049,101 Xcc-8004.1101.1 Position (kb) 1046 1047 1048Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1045.486 kb on + strandat 1045.497 kb on + strandat 1045.498 kb on - strandat 1045.613 kb on + strandat 1045.614 kb on - strandat 1045.614 kb on - strandat 1045.614 kb on - strandat 1045.637 kb on + strandat 1045.665 kb on + strandat 1045.665 kb on + strandat 1045.671 kb on - strandat 1045.707 kb on + strandat 1045.743 kb on + strandat 1045.744 kb on - strandat 1045.744 kb on - strandat 1045.769 kb on - strandat 1045.806 kb on + strandat 1045.807 kb on - strandat 1045.807 kb on - strandat 1045.942 kb on + strand, within Xcc-8004.1098.1at 1045.942 kb on + strand, within Xcc-8004.1098.1at 1045.942 kb on + strand, within Xcc-8004.1098.1at 1045.942 kb on + strand, within Xcc-8004.1098.1at 1045.969 kb on + strand, within Xcc-8004.1098.1at 1045.974 kb on + strand, within Xcc-8004.1098.1at 1045.974 kb on + strand, within Xcc-8004.1098.1at 1045.975 kb on - strand, within Xcc-8004.1098.1at 1045.985 kb on - strand, within Xcc-8004.1098.1at 1046.015 kb on - strand, within Xcc-8004.1098.1at 1046.040 kb on + strand, within Xcc-8004.1098.1at 1046.041 kb on - strand, within Xcc-8004.1098.1at 1046.047 kb on - strand, within Xcc-8004.1098.1at 1046.127 kb on + strand, within Xcc-8004.1098.1at 1046.127 kb on + strand, within Xcc-8004.1098.1at 1046.127 kb on + strand, within Xcc-8004.1098.1at 1046.128 kb on - strand, within Xcc-8004.1098.1at 1046.128 kb on - strand, within Xcc-8004.1098.1at 1046.131 kb on + strand, within Xcc-8004.1098.1at 1046.131 kb on + strand, within Xcc-8004.1098.1at 1046.138 kb on + strand, within Xcc-8004.1098.1at 1046.138 kb on + strand, within Xcc-8004.1098.1at 1046.138 kb on + strand, within Xcc-8004.1098.1at 1046.138 kb on + strand, within Xcc-8004.1098.1at 1046.139 kb on - strand, within Xcc-8004.1098.1at 1046.139 kb on - strand, within Xcc-8004.1098.1at 1046.141 kb on + strand, within Xcc-8004.1098.1at 1046.142 kb on - strand, within Xcc-8004.1098.1at 1046.142 kb on - strand, within Xcc-8004.1098.1at 1046.142 kb on - strand, within Xcc-8004.1098.1at 1046.188 kb on + strand, within Xcc-8004.1098.1at 1046.224 kb on + strand, within Xcc-8004.1098.1at 1046.224 kb on + strand, within Xcc-8004.1098.1at 1046.224 kb on + strand, within Xcc-8004.1098.1at 1046.225 kb on - strand, within Xcc-8004.1098.1at 1046.258 kb on - strand, within Xcc-8004.1098.1at 1046.277 kb on + strand, within Xcc-8004.1098.1at 1046.278 kb on - strand, within Xcc-8004.1098.1at 1046.278 kb on - strand, within Xcc-8004.1098.1at 1046.278 kb on - strand, within Xcc-8004.1098.1at 1046.278 kb on - strand, within Xcc-8004.1098.1at 1046.282 kb on + strand, within Xcc-8004.1098.1at 1046.301 kb on + strand, within Xcc-8004.1098.1at 1046.336 kb on - strandat 1046.429 kb on + strandat 1046.429 kb on + strandat 1046.439 kb on + strandat 1046.439 kb on + strandat 1046.466 kb on + strandat 1046.490 kb on - strandat 1046.501 kb on - strandat 1046.530 kb on - strandat 1046.542 kb on - strandat 1046.542 kb on - strandat 1046.542 kb on - strandat 1046.548 kb on + strandat 1046.549 kb on - strandat 1046.549 kb on - strandat 1046.559 kb on + strand, within Xcc-8004.1099.1at 1046.559 kb on + strand, within Xcc-8004.1099.1at 1046.598 kb on + strand, within Xcc-8004.1099.1at 1046.598 kb on + strand, within Xcc-8004.1099.1at 1046.598 kb on + strand, within Xcc-8004.1099.1at 1046.598 kb on + strand, within Xcc-8004.1099.1at 1046.599 kb on - strand, within Xcc-8004.1099.1at 1046.599 kb on - strand, within Xcc-8004.1099.1at 1046.600 kb on + strand, within Xcc-8004.1099.1at 1046.600 kb on + strand, within Xcc-8004.1099.1at 1046.600 kb on + strand, within Xcc-8004.1099.1at 1046.600 kb on + strand, within Xcc-8004.1099.1at 1046.601 kb on - strand, within Xcc-8004.1099.1at 1046.601 kb on - strand, within Xcc-8004.1099.1at 1046.677 kb on - strand, within Xcc-8004.1099.1at 1046.689 kb on + strand, within Xcc-8004.1099.1at 1046.689 kb on + strand, within Xcc-8004.1099.1at 1046.690 kb on - strand, within Xcc-8004.1099.1at 1046.690 kb on - strand, within Xcc-8004.1099.1at 1046.690 kb on - strand, within Xcc-8004.1099.1at 1046.904 kb on - strand, within Xcc-8004.1099.1at 1046.904 kb on - strand, within Xcc-8004.1099.1at 1046.904 kb on - strand, within Xcc-8004.1099.1at 1047.109 kb on + strand, within Xcc-8004.1099.1at 1047.110 kb on - strand, within Xcc-8004.1099.1at 1047.150 kb on - strand, within Xcc-8004.1099.1at 1047.363 kb on - strand, within Xcc-8004.1099.1at 1047.363 kb on - strand, within Xcc-8004.1099.1at 1047.473 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
remove
1,045,486 + +1.0
1,045,497 + +1.4
1,045,498 - -0.4
1,045,613 + +0.0
1,045,614 - -1.5
1,045,614 - -0.3
1,045,614 - +0.5
1,045,637 + -2.6
1,045,665 + -2.6
1,045,665 + +0.1
1,045,671 - -2.1
1,045,707 + +2.3
1,045,743 + +0.6
1,045,744 - -1.1
1,045,744 - +0.7
1,045,769 - +0.1
1,045,806 + -0.9
1,045,807 - -1.5
1,045,807 - -0.6
1,045,942 + Xcc-8004.1098.1 0.21 -0.2
1,045,942 + Xcc-8004.1098.1 0.21 +0.0
1,045,942 + Xcc-8004.1098.1 0.21 -2.0
1,045,942 + Xcc-8004.1098.1 0.21 -0.1
1,045,969 + Xcc-8004.1098.1 0.26 -0.6
1,045,974 + Xcc-8004.1098.1 0.27 +0.4
1,045,974 + Xcc-8004.1098.1 0.27 -1.7
1,045,975 - Xcc-8004.1098.1 0.27 +0.1
1,045,985 - Xcc-8004.1098.1 0.29 +1.9
1,046,015 - Xcc-8004.1098.1 0.34 -0.9
1,046,040 + Xcc-8004.1098.1 0.39 +1.7
1,046,041 - Xcc-8004.1098.1 0.39 -1.1
1,046,047 - Xcc-8004.1098.1 0.40 -0.2
1,046,127 + Xcc-8004.1098.1 0.54 +1.1
1,046,127 + Xcc-8004.1098.1 0.54 -0.9
1,046,127 + Xcc-8004.1098.1 0.54 -0.3
1,046,128 - Xcc-8004.1098.1 0.55 +1.7
1,046,128 - Xcc-8004.1098.1 0.55 -0.2
1,046,131 + Xcc-8004.1098.1 0.55 -1.2
1,046,131 + Xcc-8004.1098.1 0.55 +2.4
1,046,138 + Xcc-8004.1098.1 0.56 +1.1
1,046,138 + Xcc-8004.1098.1 0.56 -2.6
1,046,138 + Xcc-8004.1098.1 0.56 +0.1
1,046,138 + Xcc-8004.1098.1 0.56 +0.7
1,046,139 - Xcc-8004.1098.1 0.57 +1.3
1,046,139 - Xcc-8004.1098.1 0.57 +2.2
1,046,141 + Xcc-8004.1098.1 0.57 -1.5
1,046,142 - Xcc-8004.1098.1 0.57 -0.7
1,046,142 - Xcc-8004.1098.1 0.57 +1.4
1,046,142 - Xcc-8004.1098.1 0.57 -2.9
1,046,188 + Xcc-8004.1098.1 0.66 -0.2
1,046,224 + Xcc-8004.1098.1 0.72 +1.7
1,046,224 + Xcc-8004.1098.1 0.72 +0.3
1,046,224 + Xcc-8004.1098.1 0.72 +1.7
1,046,225 - Xcc-8004.1098.1 0.72 +0.5
1,046,258 - Xcc-8004.1098.1 0.78 -0.5
1,046,277 + Xcc-8004.1098.1 0.82 -1.6
1,046,278 - Xcc-8004.1098.1 0.82 +0.0
1,046,278 - Xcc-8004.1098.1 0.82 -0.7
1,046,278 - Xcc-8004.1098.1 0.82 +1.3
1,046,278 - Xcc-8004.1098.1 0.82 -0.4
1,046,282 + Xcc-8004.1098.1 0.83 +0.1
1,046,301 + Xcc-8004.1098.1 0.86 -2.3
1,046,336 - +1.4
1,046,429 + -3.0
1,046,429 + -1.0
1,046,439 + -0.9
1,046,439 + +0.6
1,046,466 + -0.5
1,046,490 - +1.5
1,046,501 - +0.1
1,046,530 - +3.3
1,046,542 - -1.2
1,046,542 - -0.4
1,046,542 - -1.2
1,046,548 + -1.6
1,046,549 - -1.9
1,046,549 - -0.1
1,046,559 + Xcc-8004.1099.1 0.10 +1.8
1,046,559 + Xcc-8004.1099.1 0.10 -0.0
1,046,598 + Xcc-8004.1099.1 0.14 -0.7
1,046,598 + Xcc-8004.1099.1 0.14 -0.6
1,046,598 + Xcc-8004.1099.1 0.14 +1.2
1,046,598 + Xcc-8004.1099.1 0.14 -0.8
1,046,599 - Xcc-8004.1099.1 0.14 +1.3
1,046,599 - Xcc-8004.1099.1 0.14 +0.1
1,046,600 + Xcc-8004.1099.1 0.14 +1.9
1,046,600 + Xcc-8004.1099.1 0.14 -0.1
1,046,600 + Xcc-8004.1099.1 0.14 +0.7
1,046,600 + Xcc-8004.1099.1 0.14 +1.3
1,046,601 - Xcc-8004.1099.1 0.14 -2.7
1,046,601 - Xcc-8004.1099.1 0.14 +1.3
1,046,677 - Xcc-8004.1099.1 0.21 +1.8
1,046,689 + Xcc-8004.1099.1 0.22 -1.3
1,046,689 + Xcc-8004.1099.1 0.22 -0.7
1,046,690 - Xcc-8004.1099.1 0.22 -0.3
1,046,690 - Xcc-8004.1099.1 0.22 -0.1
1,046,690 - Xcc-8004.1099.1 0.22 -0.2
1,046,904 - Xcc-8004.1099.1 0.41 +0.7
1,046,904 - Xcc-8004.1099.1 0.41 -0.6
1,046,904 - Xcc-8004.1099.1 0.41 +2.6
1,047,109 + Xcc-8004.1099.1 0.59 +1.7
1,047,110 - Xcc-8004.1099.1 0.59 +0.5
1,047,150 - Xcc-8004.1099.1 0.63 +0.7
1,047,363 - Xcc-8004.1099.1 0.82 -1.1
1,047,363 - Xcc-8004.1099.1 0.82 -0.1
1,047,473 + -2.0

Or see this region's nucleotide sequence