Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1061.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1060.1 and Xcc-8004.1061.1 are separated by 639 nucleotidesXcc-8004.1061.1 and Xcc-8004.1062.1 are separated by 78 nucleotides Xcc-8004.1060.1: Xcc-8004.1060.1 - Ketol-acid reductoisomerase (EC 1.1.1.86), at 1,012,001 to 1,013,002 Xcc-8004.1060.1 Xcc-8004.1061.1: Xcc-8004.1061.1 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 1,013,642 to 1,015,351 Xcc-8004.1061.1 Xcc-8004.1062.1: Xcc-8004.1062.1 - chemotaxis protein, at 1,015,430 to 1,017,268 Xcc-8004.1062.1 Position (kb) 1013 1014 1015 1016Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1013.055 kb on + strandat 1013.055 kb on + strandat 1013.055 kb on + strandat 1013.056 kb on - strandat 1013.056 kb on - strandat 1013.056 kb on - strandat 1013.056 kb on - strandat 1013.056 kb on - strandat 1013.056 kb on - strandat 1013.056 kb on - strandat 1013.059 kb on + strandat 1013.059 kb on + strandat 1013.059 kb on + strandat 1013.059 kb on + strandat 1013.060 kb on - strandat 1013.060 kb on - strandat 1013.060 kb on - strandat 1013.060 kb on - strandat 1013.264 kb on - strandat 1013.298 kb on - strandat 1013.298 kb on - strandat 1013.300 kb on + strandat 1013.300 kb on + strandat 1013.300 kb on + strandat 1013.300 kb on + strandat 1013.300 kb on + strandat 1013.300 kb on + strandat 1013.301 kb on - strandat 1013.301 kb on - strandat 1013.301 kb on - strandat 1013.301 kb on - strandat 1013.301 kb on - strandat 1013.301 kb on - strandat 1013.301 kb on - strandat 1013.301 kb on - strandat 1013.304 kb on + strandat 1013.304 kb on + strandat 1013.304 kb on + strandat 1013.392 kb on + strandat 1013.393 kb on - strandat 1013.446 kb on + strandat 1013.446 kb on + strandat 1013.597 kb on + strandat 1013.598 kb on - strandat 1013.653 kb on - strandat 1013.653 kb on - strandat 1013.653 kb on - strandat 1013.653 kb on - strandat 1013.946 kb on - strand, within Xcc-8004.1061.1at 1013.951 kb on + strand, within Xcc-8004.1061.1at 1013.952 kb on - strand, within Xcc-8004.1061.1at 1014.176 kb on + strand, within Xcc-8004.1061.1at 1014.177 kb on - strand, within Xcc-8004.1061.1at 1014.180 kb on - strand, within Xcc-8004.1061.1at 1014.213 kb on - strand, within Xcc-8004.1061.1at 1014.213 kb on - strand, within Xcc-8004.1061.1at 1014.213 kb on - strand, within Xcc-8004.1061.1at 1014.295 kb on + strand, within Xcc-8004.1061.1at 1014.295 kb on + strand, within Xcc-8004.1061.1at 1014.295 kb on + strand, within Xcc-8004.1061.1at 1014.296 kb on - strand, within Xcc-8004.1061.1at 1014.335 kb on + strand, within Xcc-8004.1061.1at 1014.335 kb on + strand, within Xcc-8004.1061.1at 1014.335 kb on + strand, within Xcc-8004.1061.1at 1014.336 kb on - strand, within Xcc-8004.1061.1at 1014.336 kb on - strand, within Xcc-8004.1061.1at 1014.336 kb on - strand, within Xcc-8004.1061.1at 1014.336 kb on - strand, within Xcc-8004.1061.1at 1014.336 kb on - strand, within Xcc-8004.1061.1at 1014.336 kb on - strand, within Xcc-8004.1061.1at 1014.336 kb on - strand, within Xcc-8004.1061.1at 1014.337 kb on + strand, within Xcc-8004.1061.1at 1014.369 kb on - strand, within Xcc-8004.1061.1at 1014.369 kb on - strand, within Xcc-8004.1061.1at 1014.398 kb on + strand, within Xcc-8004.1061.1at 1014.399 kb on - strand, within Xcc-8004.1061.1at 1014.399 kb on - strand, within Xcc-8004.1061.1at 1014.453 kb on - strand, within Xcc-8004.1061.1at 1014.453 kb on - strand, within Xcc-8004.1061.1at 1014.461 kb on + strand, within Xcc-8004.1061.1at 1014.461 kb on + strand, within Xcc-8004.1061.1at 1014.462 kb on - strand, within Xcc-8004.1061.1at 1014.520 kb on + strand, within Xcc-8004.1061.1at 1014.626 kb on + strand, within Xcc-8004.1061.1at 1014.626 kb on + strand, within Xcc-8004.1061.1at 1014.627 kb on - strand, within Xcc-8004.1061.1at 1014.627 kb on - strand, within Xcc-8004.1061.1at 1014.627 kb on - strand, within Xcc-8004.1061.1at 1014.680 kb on + strand, within Xcc-8004.1061.1at 1014.681 kb on - strand, within Xcc-8004.1061.1at 1014.681 kb on - strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.777 kb on - strand, within Xcc-8004.1061.1at 1014.777 kb on - strand, within Xcc-8004.1061.1at 1014.777 kb on - strand, within Xcc-8004.1061.1at 1014.777 kb on - strand, within Xcc-8004.1061.1at 1014.777 kb on - strand, within Xcc-8004.1061.1at 1014.830 kb on + strand, within Xcc-8004.1061.1at 1014.831 kb on - strand, within Xcc-8004.1061.1at 1014.831 kb on - strand, within Xcc-8004.1061.1at 1014.831 kb on - strand, within Xcc-8004.1061.1at 1014.929 kb on + strand, within Xcc-8004.1061.1at 1014.929 kb on + strand, within Xcc-8004.1061.1at 1014.930 kb on - strand, within Xcc-8004.1061.1at 1015.075 kb on + strand, within Xcc-8004.1061.1at 1015.075 kb on + strand, within Xcc-8004.1061.1at 1015.076 kb on - strand, within Xcc-8004.1061.1at 1015.196 kb on + strandat 1015.256 kb on + strandat 1015.257 kb on - strandat 1015.265 kb on + strandat 1015.301 kb on + strandat 1015.304 kb on + strandat 1015.305 kb on - strandat 1015.305 kb on - strandat 1015.305 kb on - strandat 1015.692 kb on - strand, within Xcc-8004.1062.1at 1015.771 kb on - strand, within Xcc-8004.1062.1at 1015.771 kb on - strand, within Xcc-8004.1062.1at 1015.954 kb on - strand, within Xcc-8004.1062.1at 1016.010 kb on + strand, within Xcc-8004.1062.1at 1016.011 kb on - strand, within Xcc-8004.1062.1at 1016.314 kb on + strand, within Xcc-8004.1062.1at 1016.315 kb on - strand, within Xcc-8004.1062.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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1,013,055 + -0.5
1,013,055 + +1.1
1,013,055 + -0.5
1,013,056 - -0.9
1,013,056 - -2.3
1,013,056 - -2.8
1,013,056 - -0.1
1,013,056 - +0.1
1,013,056 - -3.0
1,013,056 - -2.6
1,013,059 + -1.7
1,013,059 + -0.9
1,013,059 + -3.2
1,013,059 + -0.5
1,013,060 - +0.5
1,013,060 - +0.1
1,013,060 - -2.0
1,013,060 - -1.3
1,013,264 - -1.3
1,013,298 - +1.1
1,013,298 - -0.4
1,013,300 + -1.3
1,013,300 + -4.6
1,013,300 + -2.2
1,013,300 + -1.5
1,013,300 + -0.5
1,013,300 + -0.9
1,013,301 - +0.1
1,013,301 - -0.1
1,013,301 - +0.0
1,013,301 - -0.6
1,013,301 - +0.6
1,013,301 - +1.3
1,013,301 - -0.9
1,013,301 - +2.5
1,013,304 + -2.0
1,013,304 + -0.8
1,013,304 + +0.6
1,013,392 + +0.5
1,013,393 - -1.5
1,013,446 + +0.3
1,013,446 + -0.7
1,013,597 + -0.7
1,013,598 - +0.2
1,013,653 - -0.8
1,013,653 - -0.3
1,013,653 - -1.1
1,013,653 - +1.3
1,013,946 - Xcc-8004.1061.1 0.18 -0.0
1,013,951 + Xcc-8004.1061.1 0.18 +1.1
1,013,952 - Xcc-8004.1061.1 0.18 +1.3
1,014,176 + Xcc-8004.1061.1 0.31 -1.3
1,014,177 - Xcc-8004.1061.1 0.31 +1.4
1,014,180 - Xcc-8004.1061.1 0.31 -2.4
1,014,213 - Xcc-8004.1061.1 0.33 +0.4
1,014,213 - Xcc-8004.1061.1 0.33 -0.5
1,014,213 - Xcc-8004.1061.1 0.33 -2.3
1,014,295 + Xcc-8004.1061.1 0.38 -0.7
1,014,295 + Xcc-8004.1061.1 0.38 -0.1
1,014,295 + Xcc-8004.1061.1 0.38 +1.0
1,014,296 - Xcc-8004.1061.1 0.38 -0.9
1,014,335 + Xcc-8004.1061.1 0.41 +0.1
1,014,335 + Xcc-8004.1061.1 0.41 -0.4
1,014,335 + Xcc-8004.1061.1 0.41 +0.6
1,014,336 - Xcc-8004.1061.1 0.41 -0.8
1,014,336 - Xcc-8004.1061.1 0.41 -0.3
1,014,336 - Xcc-8004.1061.1 0.41 +0.1
1,014,336 - Xcc-8004.1061.1 0.41 +0.4
1,014,336 - Xcc-8004.1061.1 0.41 -1.7
1,014,336 - Xcc-8004.1061.1 0.41 -3.0
1,014,336 - Xcc-8004.1061.1 0.41 +0.5
1,014,337 + Xcc-8004.1061.1 0.41 +1.0
1,014,369 - Xcc-8004.1061.1 0.43 +0.1
1,014,369 - Xcc-8004.1061.1 0.43 -0.1
1,014,398 + Xcc-8004.1061.1 0.44 -0.5
1,014,399 - Xcc-8004.1061.1 0.44 +0.5
1,014,399 - Xcc-8004.1061.1 0.44 +2.8
1,014,453 - Xcc-8004.1061.1 0.47 +1.2
1,014,453 - Xcc-8004.1061.1 0.47 +0.1
1,014,461 + Xcc-8004.1061.1 0.48 -2.0
1,014,461 + Xcc-8004.1061.1 0.48 +0.3
1,014,462 - Xcc-8004.1061.1 0.48 +0.1
1,014,520 + Xcc-8004.1061.1 0.51 -0.1
1,014,626 + Xcc-8004.1061.1 0.58 -0.1
1,014,626 + Xcc-8004.1061.1 0.58 +1.6
1,014,627 - Xcc-8004.1061.1 0.58 +0.0
1,014,627 - Xcc-8004.1061.1 0.58 -2.4
1,014,627 - Xcc-8004.1061.1 0.58 +0.5
1,014,680 + Xcc-8004.1061.1 0.61 -0.7
1,014,681 - Xcc-8004.1061.1 0.61 -2.4
1,014,681 - Xcc-8004.1061.1 0.61 +0.2
1,014,776 + Xcc-8004.1061.1 0.66 +4.2
1,014,776 + Xcc-8004.1061.1 0.66 +0.4
1,014,776 + Xcc-8004.1061.1 0.66 -0.4
1,014,776 + Xcc-8004.1061.1 0.66 -1.2
1,014,776 + Xcc-8004.1061.1 0.66 +1.1
1,014,776 + Xcc-8004.1061.1 0.66 -0.5
1,014,776 + Xcc-8004.1061.1 0.66 +0.7
1,014,777 - Xcc-8004.1061.1 0.66 +0.3
1,014,777 - Xcc-8004.1061.1 0.66 -2.9
1,014,777 - Xcc-8004.1061.1 0.66 -0.1
1,014,777 - Xcc-8004.1061.1 0.66 +0.7
1,014,777 - Xcc-8004.1061.1 0.66 +0.3
1,014,830 + Xcc-8004.1061.1 0.69 +1.0
1,014,831 - Xcc-8004.1061.1 0.70 +0.4
1,014,831 - Xcc-8004.1061.1 0.70 -0.6
1,014,831 - Xcc-8004.1061.1 0.70 -0.6
1,014,929 + Xcc-8004.1061.1 0.75 -1.7
1,014,929 + Xcc-8004.1061.1 0.75 +0.3
1,014,930 - Xcc-8004.1061.1 0.75 +1.2
1,015,075 + Xcc-8004.1061.1 0.84 +0.8
1,015,075 + Xcc-8004.1061.1 0.84 -0.6
1,015,076 - Xcc-8004.1061.1 0.84 -0.7
1,015,196 + +0.6
1,015,256 + -0.3
1,015,257 - +0.3
1,015,265 + -1.3
1,015,301 + +0.3
1,015,304 + +0.6
1,015,305 - -0.8
1,015,305 - +5.3
1,015,305 - -2.0
1,015,692 - Xcc-8004.1062.1 0.14 +1.1
1,015,771 - Xcc-8004.1062.1 0.19 -0.1
1,015,771 - Xcc-8004.1062.1 0.19 -0.4
1,015,954 - Xcc-8004.1062.1 0.28 +1.1
1,016,010 + Xcc-8004.1062.1 0.32 -0.5
1,016,011 - Xcc-8004.1062.1 0.32 +1.0
1,016,314 + Xcc-8004.1062.1 0.48 -0.6
1,016,315 - Xcc-8004.1062.1 0.48 -0.4

Or see this region's nucleotide sequence