Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.823.1 and Xcc-8004.824.1 are separated by 224 nucleotides Xcc-8004.824.1 and Xcc-8004.825.1 are separated by 708 nucleotides
Xcc-8004.823.1: Xcc-8004.823.1 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 771,147 to 773,375
Xcc-8004.823.1
Xcc-8004.824.1: Xcc-8004.824.1 - Aminopeptidase, at 773,600 to 775,249
Xcc-8004.824.1
Xcc-8004.825.1: Xcc-8004.825.1 - sulfur deprivation response regulator, at 775,958 to 777,796
Xcc-8004.825.1
Position (kb) 773
774
775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 772.655 kb on - strand, within Xcc-8004.823.1 at 772.655 kb on - strand, within Xcc-8004.823.1 at 772.708 kb on + strand, within Xcc-8004.823.1 at 772.708 kb on + strand, within Xcc-8004.823.1 at 772.709 kb on - strand, within Xcc-8004.823.1 at 772.709 kb on - strand, within Xcc-8004.823.1 at 772.917 kb on - strand, within Xcc-8004.823.1 at 772.917 kb on - strand, within Xcc-8004.823.1 at 772.924 kb on + strand, within Xcc-8004.823.1 at 772.924 kb on + strand, within Xcc-8004.823.1 at 772.925 kb on - strand, within Xcc-8004.823.1 at 772.925 kb on - strand, within Xcc-8004.823.1 at 772.972 kb on + strand, within Xcc-8004.823.1 at 772.972 kb on + strand, within Xcc-8004.823.1 at 772.972 kb on + strand, within Xcc-8004.823.1 at 772.972 kb on + strand, within Xcc-8004.823.1 at 772.973 kb on - strand, within Xcc-8004.823.1 at 772.973 kb on - strand, within Xcc-8004.823.1 at 772.973 kb on - strand, within Xcc-8004.823.1 at 773.050 kb on + strand, within Xcc-8004.823.1 at 773.136 kb on + strand, within Xcc-8004.823.1 at 773.189 kb on + strand at 773.190 kb on - strand at 773.210 kb on - strand at 773.274 kb on + strand at 773.358 kb on + strand at 773.358 kb on + strand at 773.359 kb on - strand at 773.359 kb on - strand at 773.359 kb on - strand at 773.359 kb on - strand at 773.462 kb on + strand at 773.480 kb on - strand at 773.483 kb on - strand at 773.505 kb on + strand at 773.505 kb on + strand at 773.505 kb on + strand at 773.506 kb on - strand at 773.509 kb on + strand at 773.509 kb on + strand at 773.509 kb on + strand at 773.509 kb on + strand at 773.509 kb on + strand at 773.509 kb on + strand at 773.510 kb on - strand at 773.510 kb on - strand at 773.510 kb on - strand at 773.510 kb on - strand at 773.510 kb on - strand at 773.510 kb on - strand at 773.529 kb on + strand at 773.529 kb on + strand at 773.529 kb on + strand at 773.529 kb on + strand at 773.529 kb on + strand at 773.529 kb on + strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.560 kb on + strand at 773.560 kb on + strand at 773.561 kb on - strand at 773.561 kb on - strand at 773.720 kb on + strand at 773.720 kb on + strand at 773.721 kb on - strand at 773.768 kb on + strand, within Xcc-8004.824.1 at 773.768 kb on + strand, within Xcc-8004.824.1 at 773.769 kb on - strand, within Xcc-8004.824.1 at 773.870 kb on - strand, within Xcc-8004.824.1 at 773.887 kb on + strand, within Xcc-8004.824.1 at 773.887 kb on + strand, within Xcc-8004.824.1 at 773.887 kb on + strand, within Xcc-8004.824.1 at 773.888 kb on - strand, within Xcc-8004.824.1 at 773.890 kb on + strand, within Xcc-8004.824.1 at 773.890 kb on + strand, within Xcc-8004.824.1 at 773.891 kb on - strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.149 kb on + strand, within Xcc-8004.824.1 at 774.149 kb on + strand, within Xcc-8004.824.1 at 774.150 kb on - strand, within Xcc-8004.824.1 at 774.150 kb on - strand, within Xcc-8004.824.1 at 774.164 kb on + strand, within Xcc-8004.824.1 at 774.165 kb on - strand, within Xcc-8004.824.1 at 774.165 kb on - strand, within Xcc-8004.824.1 at 774.165 kb on - strand, within Xcc-8004.824.1 at 774.165 kb on - strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.237 kb on - strand, within Xcc-8004.824.1 at 774.237 kb on - strand, within Xcc-8004.824.1 at 774.237 kb on - strand, within Xcc-8004.824.1 at 774.458 kb on + strand, within Xcc-8004.824.1 at 774.459 kb on - strand, within Xcc-8004.824.1 at 774.459 kb on - strand, within Xcc-8004.824.1 at 774.542 kb on + strand, within Xcc-8004.824.1 at 774.542 kb on + strand, within Xcc-8004.824.1 at 774.542 kb on + strand, within Xcc-8004.824.1 at 774.542 kb on + strand, within Xcc-8004.824.1 at 774.543 kb on - strand, within Xcc-8004.824.1 at 774.543 kb on - strand, within Xcc-8004.824.1 at 774.746 kb on + strand, within Xcc-8004.824.1 at 774.746 kb on + strand, within Xcc-8004.824.1 at 774.746 kb on + strand, within Xcc-8004.824.1 at 774.746 kb on + strand, within Xcc-8004.824.1 at 774.747 kb on - strand, within Xcc-8004.824.1 at 774.747 kb on - strand, within Xcc-8004.824.1 at 774.839 kb on - strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.908 kb on + strand, within Xcc-8004.824.1 at 774.909 kb on - strand, within Xcc-8004.824.1 at 774.938 kb on + strand, within Xcc-8004.824.1 at 774.939 kb on - strand, within Xcc-8004.824.1 at 774.996 kb on - strand, within Xcc-8004.824.1 at 775.058 kb on + strand, within Xcc-8004.824.1 at 775.058 kb on + strand, within Xcc-8004.824.1 at 775.059 kb on - strand, within Xcc-8004.824.1 at 775.073 kb on + strand, within Xcc-8004.824.1 at 775.074 kb on - strand, within Xcc-8004.824.1 at 775.145 kb on + strand at 775.146 kb on - strand at 775.247 kb on + strand at 775.247 kb on + strand at 775.247 kb on + strand at 775.248 kb on - strand at 775.248 kb on - strand at 775.277 kb on + strand at 775.277 kb on + strand at 775.277 kb on + strand at 775.277 kb on + strand at 775.277 kb on + strand at 775.278 kb on - strand at 775.278 kb on - strand at 775.278 kb on - strand at 775.278 kb on - strand at 775.278 kb on - strand at 775.289 kb on + strand at 775.289 kb on + strand at 775.289 kb on + strand at 775.289 kb on + strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.353 kb on + strand at 775.467 kb on + strand at 775.468 kb on - strand at 775.468 kb on - strand at 775.486 kb on + strand at 775.486 kb on + strand at 775.486 kb on + strand at 775.486 kb on + strand at 775.487 kb on - strand at 775.487 kb on - strand at 775.487 kb on - strand at 775.498 kb on + strand at 775.498 kb on + strand at 775.499 kb on - strand at 775.556 kb on + strand at 775.556 kb on + strand at 775.557 kb on - strand at 775.557 kb on - strand at 775.557 kb on - strand at 775.744 kb on + strand at 775.744 kb on + strand at 775.744 kb on + strand at 775.744 kb on + strand at 775.744 kb on + strand at 775.745 kb on - strand at 775.745 kb on - strand at 775.745 kb on - strand at 775.926 kb on + strand at 775.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 772,655 - Xcc-8004.823.1 0.68 +0.5 772,655 - Xcc-8004.823.1 0.68 +0.3 772,708 + Xcc-8004.823.1 0.70 +0.1 772,708 + Xcc-8004.823.1 0.70 +3.0 772,709 - Xcc-8004.823.1 0.70 -0.2 772,709 - Xcc-8004.823.1 0.70 +1.8 772,917 - Xcc-8004.823.1 0.79 +0.6 772,917 - Xcc-8004.823.1 0.79 +1.6 772,924 + Xcc-8004.823.1 0.80 +0.2 772,924 + Xcc-8004.823.1 0.80 -0.1 772,925 - Xcc-8004.823.1 0.80 +0.9 772,925 - Xcc-8004.823.1 0.80 -0.7 772,972 + Xcc-8004.823.1 0.82 +0.2 772,972 + Xcc-8004.823.1 0.82 +0.5 772,972 + Xcc-8004.823.1 0.82 -0.2 772,972 + Xcc-8004.823.1 0.82 +1.3 772,973 - Xcc-8004.823.1 0.82 +0.0 772,973 - Xcc-8004.823.1 0.82 -2.2 772,973 - Xcc-8004.823.1 0.82 -0.2 773,050 + Xcc-8004.823.1 0.85 +1.8 773,136 + Xcc-8004.823.1 0.89 -0.3 773,189 + -1.3 773,190 - +0.4 773,210 - -0.3 773,274 + -1.0 773,358 + -0.3 773,358 + -0.1 773,359 - +0.1 773,359 - -2.7 773,359 - -0.4 773,359 - -1.3 773,462 + +0.4 773,480 - -0.4 773,483 - -1.4 773,505 + +0.8 773,505 + -2.3 773,505 + -1.0 773,506 - -2.0 773,509 + +1.2 773,509 + +0.2 773,509 + -1.0 773,509 + +1.6 773,509 + +0.2 773,509 + +0.3 773,510 - -0.0 773,510 - +0.9 773,510 - +1.5 773,510 - -0.6 773,510 - -1.0 773,510 - -0.7 773,529 + -0.4 773,529 + -0.8 773,529 + -2.5 773,529 + -0.4 773,529 + +0.3 773,529 + -1.6 773,530 - -0.1 773,530 - +1.8 773,530 - +0.1 773,530 - -0.1 773,530 - -0.8 773,530 - -1.0 773,530 - -0.3 773,560 + +1.4 773,560 + +0.8 773,561 - +0.3 773,561 - +0.9 773,720 + +1.1 773,720 + -0.5 773,721 - -0.6 773,768 + Xcc-8004.824.1 0.10 +0.6 773,768 + Xcc-8004.824.1 0.10 -0.8 773,769 - Xcc-8004.824.1 0.10 +1.1 773,870 - Xcc-8004.824.1 0.16 +1.8 773,887 + Xcc-8004.824.1 0.17 -1.6 773,887 + Xcc-8004.824.1 0.17 +0.0 773,887 + Xcc-8004.824.1 0.17 -0.3 773,888 - Xcc-8004.824.1 0.17 +0.0 773,890 + Xcc-8004.824.1 0.18 +0.8 773,890 + Xcc-8004.824.1 0.18 +0.4 773,891 - Xcc-8004.824.1 0.18 -2.4 774,146 + Xcc-8004.824.1 0.33 -0.5 774,146 + Xcc-8004.824.1 0.33 -0.3 774,146 + Xcc-8004.824.1 0.33 +0.3 774,146 + Xcc-8004.824.1 0.33 +0.4 774,146 + Xcc-8004.824.1 0.33 +2.5 774,146 + Xcc-8004.824.1 0.33 +0.0 774,146 + Xcc-8004.824.1 0.33 +0.4 774,146 + Xcc-8004.824.1 0.33 +0.4 774,146 + Xcc-8004.824.1 0.33 +1.8 774,146 + Xcc-8004.824.1 0.33 -0.6 774,147 - Xcc-8004.824.1 0.33 -0.3 774,147 - Xcc-8004.824.1 0.33 +1.0 774,147 - Xcc-8004.824.1 0.33 +2.7 774,147 - Xcc-8004.824.1 0.33 +0.2 774,147 - Xcc-8004.824.1 0.33 +0.8 774,147 - Xcc-8004.824.1 0.33 -0.6 774,147 - Xcc-8004.824.1 0.33 +1.1 774,147 - Xcc-8004.824.1 0.33 +2.3 774,147 - Xcc-8004.824.1 0.33 +0.5 774,147 - Xcc-8004.824.1 0.33 +0.7 774,149 + Xcc-8004.824.1 0.33 +0.0 774,149 + Xcc-8004.824.1 0.33 +0.7 774,150 - Xcc-8004.824.1 0.33 +0.5 774,150 - Xcc-8004.824.1 0.33 -0.6 774,164 + Xcc-8004.824.1 0.34 +1.3 774,165 - Xcc-8004.824.1 0.34 -2.4 774,165 - Xcc-8004.824.1 0.34 -0.1 774,165 - Xcc-8004.824.1 0.34 -0.4 774,165 - Xcc-8004.824.1 0.34 -1.5 774,170 + Xcc-8004.824.1 0.35 +1.6 774,170 + Xcc-8004.824.1 0.35 +0.6 774,170 + Xcc-8004.824.1 0.35 -1.0 774,170 + Xcc-8004.824.1 0.35 -3.1 774,170 + Xcc-8004.824.1 0.35 -0.7 774,170 + Xcc-8004.824.1 0.35 -0.6 774,171 - Xcc-8004.824.1 0.35 +0.9 774,171 - Xcc-8004.824.1 0.35 +1.3 774,171 - Xcc-8004.824.1 0.35 -1.3 774,171 - Xcc-8004.824.1 0.35 -0.9 774,171 - Xcc-8004.824.1 0.35 -0.4 774,171 - Xcc-8004.824.1 0.35 +0.6 774,237 - Xcc-8004.824.1 0.39 +0.7 774,237 - Xcc-8004.824.1 0.39 -0.3 774,237 - Xcc-8004.824.1 0.39 -0.6 774,458 + Xcc-8004.824.1 0.52 +0.4 774,459 - Xcc-8004.824.1 0.52 -0.0 774,459 - Xcc-8004.824.1 0.52 +0.5 774,542 + Xcc-8004.824.1 0.57 +0.8 774,542 + Xcc-8004.824.1 0.57 +1.2 774,542 + Xcc-8004.824.1 0.57 +2.4 774,542 + Xcc-8004.824.1 0.57 -1.7 774,543 - Xcc-8004.824.1 0.57 -0.7 774,543 - Xcc-8004.824.1 0.57 +1.0 774,746 + Xcc-8004.824.1 0.69 -1.1 774,746 + Xcc-8004.824.1 0.69 -0.3 774,746 + Xcc-8004.824.1 0.69 +0.4 774,746 + Xcc-8004.824.1 0.69 -0.7 774,747 - Xcc-8004.824.1 0.70 +0.9 774,747 - Xcc-8004.824.1 0.70 +1.9 774,839 - Xcc-8004.824.1 0.75 +0.1 774,842 + Xcc-8004.824.1 0.75 -1.0 774,842 + Xcc-8004.824.1 0.75 -1.9 774,842 + Xcc-8004.824.1 0.75 +0.3 774,842 + Xcc-8004.824.1 0.75 +0.2 774,842 + Xcc-8004.824.1 0.75 -1.9 774,842 + Xcc-8004.824.1 0.75 -2.0 774,843 - Xcc-8004.824.1 0.75 -0.7 774,843 - Xcc-8004.824.1 0.75 -2.1 774,843 - Xcc-8004.824.1 0.75 -1.2 774,843 - Xcc-8004.824.1 0.75 +0.5 774,843 - Xcc-8004.824.1 0.75 +1.0 774,843 - Xcc-8004.824.1 0.75 +0.8 774,908 + Xcc-8004.824.1 0.79 +2.8 774,909 - Xcc-8004.824.1 0.79 +0.1 774,938 + Xcc-8004.824.1 0.81 -4.4 774,939 - Xcc-8004.824.1 0.81 +0.9 774,996 - Xcc-8004.824.1 0.85 +1.4 775,058 + Xcc-8004.824.1 0.88 -1.8 775,058 + Xcc-8004.824.1 0.88 +0.5 775,059 - Xcc-8004.824.1 0.88 +2.3 775,073 + Xcc-8004.824.1 0.89 -1.0 775,074 - Xcc-8004.824.1 0.89 +0.7 775,145 + -0.3 775,146 - +0.2 775,247 + +0.5 775,247 + +1.4 775,247 + +0.4 775,248 - -1.4 775,248 - -1.2 775,277 + +1.4 775,277 + -0.8 775,277 + +1.4 775,277 + -0.7 775,277 + -0.2 775,278 - -1.1 775,278 - -0.6 775,278 - +0.1 775,278 - -3.0 775,278 - -2.9 775,289 + +1.8 775,289 + +1.6 775,289 + +0.8 775,289 + +1.2 775,290 - +0.6 775,290 - -0.1 775,290 - -0.1 775,290 - -0.3 775,290 - +1.5 775,290 - -1.0 775,290 - -1.0 775,353 + +1.0 775,467 + +0.1 775,468 - +0.1 775,468 - +0.4 775,486 + -0.5 775,486 + -1.2 775,486 + +1.1 775,486 + -0.1 775,487 - -1.1 775,487 - +0.6 775,487 - -1.6 775,498 + -0.8 775,498 + +0.7 775,499 - -0.3 775,556 + -0.4 775,556 + -0.5 775,557 - +0.3 775,557 - +1.2 775,557 - +0.3 775,744 + -1.1 775,744 + +0.3 775,744 + -0.4 775,744 + -0.5 775,744 + -1.0 775,745 - -0.7 775,745 - +0.1 775,745 - -0.5 775,926 + -1.3 775,927 - +1.1
Or see this region's nucleotide sequence