Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5139.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5137.1 and Xcc-8004.5138.1 are separated by 129 nucleotidesXcc-8004.5138.1 and Xcc-8004.5139.1 are separated by 69 nucleotidesXcc-8004.5139.1 and Xcc-8004.5140.1 overlap by 4 nucleotidesXcc-8004.5140.1 and Xcc-8004.5141.1 are separated by 89 nucleotides Xcc-8004.5137.1: Xcc-8004.5137.1 - 4'-phosphopantetheinyl transferase (EC 2.7.8.-), at 4,871,004 to 4,871,618 Xcc-8004.5137.1 Xcc-8004.5138.1: Xcc-8004.5138.1 - transglycosylase associated protein, at 4,871,748 to 4,871,999 Xcc-8004.5138.1 Xcc-8004.5139.1: Xcc-8004.5139.1 - Gfa-like protein, at 4,872,069 to 4,872,503 Xcc-8004.5139.1 Xcc-8004.5140.1: Xcc-8004.5140.1 - Exodeoxyribonuclease III (EC 3.1.11.2), at 4,872,500 to 4,873,279 Xcc-8004.5140.1 Xcc-8004.5141.1: Xcc-8004.5141.1 - FIG01212911: hypothetical protein, at 4,873,369 to 4,873,929 Xcc-8004.5141.1 Position (kb) 4872 4873Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.978 kb on + strandat 4872.139 kb on + strand, within Xcc-8004.5139.1at 4872.173 kb on - strand, within Xcc-8004.5139.1at 4872.173 kb on - strand, within Xcc-8004.5139.1at 4872.173 kb on - strand, within Xcc-8004.5139.1at 4872.178 kb on + strand, within Xcc-8004.5139.1at 4872.214 kb on + strand, within Xcc-8004.5139.1at 4872.214 kb on + strand, within Xcc-8004.5139.1at 4872.214 kb on + strand, within Xcc-8004.5139.1at 4872.214 kb on + strand, within Xcc-8004.5139.1at 4872.214 kb on + strand, within Xcc-8004.5139.1at 4872.215 kb on - strand, within Xcc-8004.5139.1at 4872.215 kb on - strand, within Xcc-8004.5139.1at 4872.215 kb on - strand, within Xcc-8004.5139.1at 4872.238 kb on + strand, within Xcc-8004.5139.1at 4872.238 kb on + strand, within Xcc-8004.5139.1at 4872.239 kb on - strand, within Xcc-8004.5139.1at 4872.239 kb on - strand, within Xcc-8004.5139.1at 4872.268 kb on + strand, within Xcc-8004.5139.1at 4872.813 kb on + strand, within Xcc-8004.5140.1at 4872.814 kb on - strand, within Xcc-8004.5140.1at 4872.927 kb on + strand, within Xcc-8004.5140.1at 4872.928 kb on - strand, within Xcc-8004.5140.1at 4872.933 kb on + strand, within Xcc-8004.5140.1at 4872.934 kb on - strand, within Xcc-8004.5140.1at 4872.934 kb on - strand, within Xcc-8004.5140.1at 4872.934 kb on - strand, within Xcc-8004.5140.1at 4872.934 kb on - strand, within Xcc-8004.5140.1at 4872.934 kb on - strand, within Xcc-8004.5140.1at 4872.970 kb on - strand, within Xcc-8004.5140.1at 4873.395 kb on - strandat 4873.459 kb on + strand, within Xcc-8004.5141.1at 4873.459 kb on + strand, within Xcc-8004.5141.1at 4873.459 kb on + strand, within Xcc-8004.5141.1at 4873.459 kb on + strand, within Xcc-8004.5141.1at 4873.459 kb on + strand, within Xcc-8004.5141.1at 4873.459 kb on + strand, within Xcc-8004.5141.1at 4873.460 kb on - strand, within Xcc-8004.5141.1at 4873.460 kb on - strand, within Xcc-8004.5141.1at 4873.460 kb on - strand, within Xcc-8004.5141.1at 4873.460 kb on - strand, within Xcc-8004.5141.1at 4873.460 kb on - strand, within Xcc-8004.5141.1at 4873.460 kb on - strand, within Xcc-8004.5141.1at 4873.460 kb on - strand, within Xcc-8004.5141.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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4,871,845 + Xcc-8004.5138.1 0.38 -1.0
4,871,845 + Xcc-8004.5138.1 0.38 +0.9
4,871,845 + Xcc-8004.5138.1 0.38 +0.1
4,871,845 + Xcc-8004.5138.1 0.38 +1.4
4,871,845 + Xcc-8004.5138.1 0.38 -1.0
4,871,845 + Xcc-8004.5138.1 0.38 -2.2
4,871,845 + Xcc-8004.5138.1 0.38 +0.5
4,871,845 + Xcc-8004.5138.1 0.38 -1.1
4,871,845 + Xcc-8004.5138.1 0.38 +1.2
4,871,846 - Xcc-8004.5138.1 0.39 -1.3
4,871,846 - Xcc-8004.5138.1 0.39 -0.9
4,871,846 - Xcc-8004.5138.1 0.39 -0.2
4,871,846 - Xcc-8004.5138.1 0.39 -4.0
4,871,846 - Xcc-8004.5138.1 0.39 +1.8
4,871,846 - Xcc-8004.5138.1 0.39 -0.8
4,871,846 - Xcc-8004.5138.1 0.39 -0.8
4,871,978 + -0.5
4,872,139 + Xcc-8004.5139.1 0.16 -0.8
4,872,173 - Xcc-8004.5139.1 0.24 -1.8
4,872,173 - Xcc-8004.5139.1 0.24 +3.4
4,872,173 - Xcc-8004.5139.1 0.24 +1.6
4,872,178 + Xcc-8004.5139.1 0.25 -0.2
4,872,214 + Xcc-8004.5139.1 0.33 +3.8
4,872,214 + Xcc-8004.5139.1 0.33 -1.5
4,872,214 + Xcc-8004.5139.1 0.33 +0.0
4,872,214 + Xcc-8004.5139.1 0.33 -0.2
4,872,214 + Xcc-8004.5139.1 0.33 +1.6
4,872,215 - Xcc-8004.5139.1 0.34 +0.4
4,872,215 - Xcc-8004.5139.1 0.34 +0.4
4,872,215 - Xcc-8004.5139.1 0.34 -0.2
4,872,238 + Xcc-8004.5139.1 0.39 +0.0
4,872,238 + Xcc-8004.5139.1 0.39 -1.0
4,872,239 - Xcc-8004.5139.1 0.39 +1.3
4,872,239 - Xcc-8004.5139.1 0.39 +2.2
4,872,268 + Xcc-8004.5139.1 0.46 +0.7
4,872,813 + Xcc-8004.5140.1 0.40 +0.2
4,872,814 - Xcc-8004.5140.1 0.40 +0.8
4,872,927 + Xcc-8004.5140.1 0.55 +0.8
4,872,928 - Xcc-8004.5140.1 0.55 -1.2
4,872,933 + Xcc-8004.5140.1 0.56 -0.2
4,872,934 - Xcc-8004.5140.1 0.56 -0.5
4,872,934 - Xcc-8004.5140.1 0.56 +0.6
4,872,934 - Xcc-8004.5140.1 0.56 -0.9
4,872,934 - Xcc-8004.5140.1 0.56 +1.8
4,872,934 - Xcc-8004.5140.1 0.56 -1.2
4,872,970 - Xcc-8004.5140.1 0.60 -0.3
4,873,395 - -1.2
4,873,459 + Xcc-8004.5141.1 0.16 -1.6
4,873,459 + Xcc-8004.5141.1 0.16 -0.3
4,873,459 + Xcc-8004.5141.1 0.16 +1.5
4,873,459 + Xcc-8004.5141.1 0.16 +0.0
4,873,459 + Xcc-8004.5141.1 0.16 -1.8
4,873,459 + Xcc-8004.5141.1 0.16 -0.3
4,873,460 - Xcc-8004.5141.1 0.16 -0.4
4,873,460 - Xcc-8004.5141.1 0.16 -0.2
4,873,460 - Xcc-8004.5141.1 0.16 +0.1
4,873,460 - Xcc-8004.5141.1 0.16 +0.6
4,873,460 - Xcc-8004.5141.1 0.16 +1.1
4,873,460 - Xcc-8004.5141.1 0.16 -2.3
4,873,460 - Xcc-8004.5141.1 0.16 -0.3

Or see this region's nucleotide sequence