Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4637.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4633.1 and Xcc-8004.4634.1 are separated by 150 nucleotidesXcc-8004.4634.1 and Xcc-8004.4635.1 are separated by 139 nucleotidesXcc-8004.4635.1 and Xcc-8004.4637.1 are separated by 284 nucleotidesXcc-8004.4637.1 and Xcc-8004.4638.1 overlap by 4 nucleotides Xcc-8004.4633.1: Xcc-8004.4633.1 - FIG01210488: hypothetical protein, at 4,414,171 to 4,414,725 Xcc-8004.4633.1 Xcc-8004.4634.1: Xcc-8004.4634.1 - FIG01211407: hypothetical protein, at 4,414,876 to 4,415,157 Xcc-8004.4634.1 Xcc-8004.4635.1: Xcc-8004.4635.1 - hypothetical protein, at 4,415,297 to 4,415,434 Xcc-8004.4635.1 Xcc-8004.4637.1: Xcc-8004.4637.1 - ABC-type multidrug transport system, permease component, at 4,415,719 to 4,416,480 Xcc-8004.4637.1 Xcc-8004.4638.1: Xcc-8004.4638.1 - ABC-type multidrug transport system, ATPase component, at 4,416,477 to 4,417,421 Xcc-8004.4638.1 Position (kb) 4415 4416 4417Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4414.790 kb on - strandat 4415.014 kb on + strand, within Xcc-8004.4634.1at 4415.014 kb on + strand, within Xcc-8004.4634.1at 4415.014 kb on + strand, within Xcc-8004.4634.1at 4415.113 kb on + strand, within Xcc-8004.4634.1at 4415.113 kb on + strand, within Xcc-8004.4634.1at 4415.113 kb on + strand, within Xcc-8004.4634.1at 4415.114 kb on - strand, within Xcc-8004.4634.1at 4415.114 kb on - strand, within Xcc-8004.4634.1at 4415.114 kb on - strand, within Xcc-8004.4634.1at 4415.114 kb on - strand, within Xcc-8004.4634.1at 4415.114 kb on - strand, within Xcc-8004.4634.1at 4415.114 kb on - strand, within Xcc-8004.4634.1at 4415.116 kb on + strand, within Xcc-8004.4634.1at 4415.116 kb on + strand, within Xcc-8004.4634.1at 4415.116 kb on + strand, within Xcc-8004.4634.1at 4415.117 kb on - strand, within Xcc-8004.4634.1at 4415.215 kb on + strandat 4415.215 kb on + strandat 4415.215 kb on + strandat 4415.215 kb on + strandat 4415.215 kb on + strandat 4415.215 kb on + strandat 4415.215 kb on + strandat 4415.216 kb on - strandat 4415.216 kb on - strandat 4415.216 kb on - strandat 4415.219 kb on + strandat 4415.219 kb on + strandat 4415.220 kb on - strandat 4415.344 kb on + strand, within Xcc-8004.4635.1at 4415.345 kb on - strand, within Xcc-8004.4635.1at 4415.345 kb on - strand, within Xcc-8004.4635.1at 4415.834 kb on + strand, within Xcc-8004.4637.1at 4415.834 kb on + strand, within Xcc-8004.4637.1at 4415.835 kb on - strand, within Xcc-8004.4637.1at 4415.864 kb on + strand, within Xcc-8004.4637.1at 4415.924 kb on + strand, within Xcc-8004.4637.1at 4415.924 kb on + strand, within Xcc-8004.4637.1at 4415.924 kb on + strand, within Xcc-8004.4637.1at 4415.924 kb on + strand, within Xcc-8004.4637.1at 4415.925 kb on - strand, within Xcc-8004.4637.1at 4415.925 kb on - strand, within Xcc-8004.4637.1at 4416.165 kb on - strand, within Xcc-8004.4637.1at 4416.165 kb on - strand, within Xcc-8004.4637.1at 4416.212 kb on + strand, within Xcc-8004.4637.1at 4416.213 kb on - strand, within Xcc-8004.4637.1at 4416.213 kb on - strand, within Xcc-8004.4637.1at 4416.213 kb on - strand, within Xcc-8004.4637.1at 4416.239 kb on + strand, within Xcc-8004.4637.1at 4416.239 kb on + strand, within Xcc-8004.4637.1at 4416.239 kb on + strand, within Xcc-8004.4637.1at 4416.240 kb on - strand, within Xcc-8004.4637.1at 4416.240 kb on - strand, within Xcc-8004.4637.1at 4416.240 kb on - strand, within Xcc-8004.4637.1at 4416.240 kb on - strand, within Xcc-8004.4637.1at 4416.240 kb on - strand, within Xcc-8004.4637.1at 4416.367 kb on + strand, within Xcc-8004.4637.1at 4416.368 kb on - strand, within Xcc-8004.4637.1at 4416.378 kb on - strand, within Xcc-8004.4637.1at 4416.378 kb on - strand, within Xcc-8004.4637.1at 4416.378 kb on - strand, within Xcc-8004.4637.1at 4416.453 kb on - strandat 4416.453 kb on - strandat 4416.640 kb on + strand, within Xcc-8004.4638.1at 4416.640 kb on + strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.641 kb on - strand, within Xcc-8004.4638.1at 4416.844 kb on + strand, within Xcc-8004.4638.1at 4416.844 kb on + strand, within Xcc-8004.4638.1at 4416.844 kb on + strand, within Xcc-8004.4638.1at 4416.844 kb on + strand, within Xcc-8004.4638.1at 4416.845 kb on - strand, within Xcc-8004.4638.1at 4416.845 kb on - strand, within Xcc-8004.4638.1at 4416.845 kb on - strand, within Xcc-8004.4638.1at 4416.845 kb on - strand, within Xcc-8004.4638.1at 4417.081 kb on + strand, within Xcc-8004.4638.1at 4417.081 kb on + strand, within Xcc-8004.4638.1at 4417.081 kb on + strand, within Xcc-8004.4638.1at 4417.381 kb on + strandat 4417.381 kb on + strandat 4417.381 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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4,414,790 - -1.0
4,415,014 + Xcc-8004.4634.1 0.49 +2.3
4,415,014 + Xcc-8004.4634.1 0.49 -0.3
4,415,014 + Xcc-8004.4634.1 0.49 -1.5
4,415,113 + Xcc-8004.4634.1 0.84 -0.6
4,415,113 + Xcc-8004.4634.1 0.84 +0.0
4,415,113 + Xcc-8004.4634.1 0.84 -2.0
4,415,114 - Xcc-8004.4634.1 0.84 +0.2
4,415,114 - Xcc-8004.4634.1 0.84 +0.2
4,415,114 - Xcc-8004.4634.1 0.84 -0.4
4,415,114 - Xcc-8004.4634.1 0.84 +0.1
4,415,114 - Xcc-8004.4634.1 0.84 -0.7
4,415,114 - Xcc-8004.4634.1 0.84 +0.1
4,415,116 + Xcc-8004.4634.1 0.85 -0.3
4,415,116 + Xcc-8004.4634.1 0.85 +0.5
4,415,116 + Xcc-8004.4634.1 0.85 -0.7
4,415,117 - Xcc-8004.4634.1 0.85 +1.1
4,415,215 + +2.3
4,415,215 + +0.6
4,415,215 + -0.3
4,415,215 + +0.4
4,415,215 + -2.2
4,415,215 + -0.4
4,415,215 + +0.4
4,415,216 - +1.4
4,415,216 - +0.2
4,415,216 - -0.6
4,415,219 + -0.4
4,415,219 + -0.7
4,415,220 - -0.1
4,415,344 + Xcc-8004.4635.1 0.34 +1.1
4,415,345 - Xcc-8004.4635.1 0.35 +0.3
4,415,345 - Xcc-8004.4635.1 0.35 -0.5
4,415,834 + Xcc-8004.4637.1 0.15 +0.5
4,415,834 + Xcc-8004.4637.1 0.15 -0.1
4,415,835 - Xcc-8004.4637.1 0.15 -0.6
4,415,864 + Xcc-8004.4637.1 0.19 +1.3
4,415,924 + Xcc-8004.4637.1 0.27 +0.5
4,415,924 + Xcc-8004.4637.1 0.27 -0.8
4,415,924 + Xcc-8004.4637.1 0.27 -0.0
4,415,924 + Xcc-8004.4637.1 0.27 -1.8
4,415,925 - Xcc-8004.4637.1 0.27 -0.0
4,415,925 - Xcc-8004.4637.1 0.27 +0.4
4,416,165 - Xcc-8004.4637.1 0.59 -0.1
4,416,165 - Xcc-8004.4637.1 0.59 -1.0
4,416,212 + Xcc-8004.4637.1 0.65 -1.3
4,416,213 - Xcc-8004.4637.1 0.65 +1.1
4,416,213 - Xcc-8004.4637.1 0.65 +0.7
4,416,213 - Xcc-8004.4637.1 0.65 -0.6
4,416,239 + Xcc-8004.4637.1 0.68 -0.5
4,416,239 + Xcc-8004.4637.1 0.68 +0.9
4,416,239 + Xcc-8004.4637.1 0.68 -0.6
4,416,240 - Xcc-8004.4637.1 0.68 +0.2
4,416,240 - Xcc-8004.4637.1 0.68 -0.3
4,416,240 - Xcc-8004.4637.1 0.68 +0.2
4,416,240 - Xcc-8004.4637.1 0.68 -0.4
4,416,240 - Xcc-8004.4637.1 0.68 +0.2
4,416,367 + Xcc-8004.4637.1 0.85 +0.5
4,416,368 - Xcc-8004.4637.1 0.85 -1.0
4,416,378 - Xcc-8004.4637.1 0.86 +0.4
4,416,378 - Xcc-8004.4637.1 0.86 +2.8
4,416,378 - Xcc-8004.4637.1 0.86 +0.6
4,416,453 - +0.1
4,416,453 - -0.1
4,416,640 + Xcc-8004.4638.1 0.17 -1.3
4,416,640 + Xcc-8004.4638.1 0.17 -0.7
4,416,641 - Xcc-8004.4638.1 0.17 +0.9
4,416,641 - Xcc-8004.4638.1 0.17 -2.3
4,416,641 - Xcc-8004.4638.1 0.17 +0.2
4,416,641 - Xcc-8004.4638.1 0.17 -0.0
4,416,641 - Xcc-8004.4638.1 0.17 +0.9
4,416,641 - Xcc-8004.4638.1 0.17 -2.0
4,416,641 - Xcc-8004.4638.1 0.17 -1.8
4,416,641 - Xcc-8004.4638.1 0.17 +1.7
4,416,641 - Xcc-8004.4638.1 0.17 -1.6
4,416,641 - Xcc-8004.4638.1 0.17 +1.4
4,416,641 - Xcc-8004.4638.1 0.17 +1.2
4,416,641 - Xcc-8004.4638.1 0.17 +0.4
4,416,844 + Xcc-8004.4638.1 0.39 +3.8
4,416,844 + Xcc-8004.4638.1 0.39 -0.7
4,416,844 + Xcc-8004.4638.1 0.39 +1.4
4,416,844 + Xcc-8004.4638.1 0.39 -0.1
4,416,845 - Xcc-8004.4638.1 0.39 -0.0
4,416,845 - Xcc-8004.4638.1 0.39 +0.6
4,416,845 - Xcc-8004.4638.1 0.39 -3.0
4,416,845 - Xcc-8004.4638.1 0.39 -0.4
4,417,081 + Xcc-8004.4638.1 0.64 -1.2
4,417,081 + Xcc-8004.4638.1 0.64 +1.2
4,417,081 + Xcc-8004.4638.1 0.64 +0.7
4,417,381 + +0.1
4,417,381 + +1.5
4,417,381 + +1.7

Or see this region's nucleotide sequence