Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4070.1 and Xcc-8004.4071.1 are separated by 114 nucleotides Xcc-8004.4071.1 and Xcc-8004.4072.1 are separated by 235 nucleotides Xcc-8004.4072.1 and Xcc-8004.4073.1 are separated by 31 nucleotides
Xcc-8004.4070.1: Xcc-8004.4070.1 - peptidyl-Asp metalloendopeptidase, at 3,926,855 to 3,928,108
Xcc-8004.4070.1
Xcc-8004.4071.1: Xcc-8004.4071.1 - hypothetical protein, at 3,928,223 to 3,928,480
Xcc-8004.4071.1
Xcc-8004.4072.1: Xcc-8004.4072.1 - COG2833: uncharacterized protein, at 3,928,716 to 3,929,564
Xcc-8004.4072.1
Xcc-8004.4073.1: Xcc-8004.4073.1 - Amidophosphoribosyltransferase (EC 2.4.2.14), at 3,929,596 to 3,931,062
Xcc-8004.4073.1
Position (kb) 3928
3929
3930 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3927.869 kb on + strand, within Xcc-8004.4070.1 at 3927.869 kb on + strand, within Xcc-8004.4070.1 at 3927.870 kb on - strand, within Xcc-8004.4070.1 at 3927.954 kb on - strand, within Xcc-8004.4070.1 at 3927.963 kb on - strand, within Xcc-8004.4070.1 at 3927.963 kb on - strand, within Xcc-8004.4070.1 at 3928.122 kb on + strand at 3928.122 kb on + strand at 3928.122 kb on + strand at 3928.122 kb on + strand at 3928.123 kb on - strand at 3928.178 kb on - strand at 3928.211 kb on + strand at 3928.212 kb on - strand at 3928.225 kb on - strand at 3928.447 kb on + strand, within Xcc-8004.4071.1 at 3928.447 kb on + strand, within Xcc-8004.4071.1 at 3928.447 kb on + strand, within Xcc-8004.4071.1 at 3928.447 kb on + strand, within Xcc-8004.4071.1 at 3928.447 kb on + strand, within Xcc-8004.4071.1 at 3928.448 kb on - strand, within Xcc-8004.4071.1 at 3928.461 kb on - strand at 3928.514 kb on - strand at 3928.594 kb on + strand at 3928.594 kb on + strand at 3928.615 kb on + strand at 3928.616 kb on - strand at 3928.686 kb on + strand at 3928.687 kb on - strand at 3928.816 kb on + strand, within Xcc-8004.4072.1 at 3929.110 kb on + strand, within Xcc-8004.4072.1 at 3929.111 kb on - strand, within Xcc-8004.4072.1 at 3929.194 kb on + strand, within Xcc-8004.4072.1 at 3929.194 kb on + strand, within Xcc-8004.4072.1 at 3929.194 kb on + strand, within Xcc-8004.4072.1 at 3929.194 kb on + strand, within Xcc-8004.4072.1 at 3929.195 kb on - strand, within Xcc-8004.4072.1 at 3929.225 kb on - strand, within Xcc-8004.4072.1 at 3929.307 kb on - strand, within Xcc-8004.4072.1 at 3929.372 kb on + strand, within Xcc-8004.4072.1 at 3929.372 kb on + strand, within Xcc-8004.4072.1 at 3929.373 kb on - strand, within Xcc-8004.4072.1 at 3929.654 kb on + strand at 3929.654 kb on + strand at 3929.655 kb on - strand at 3929.678 kb on + strand at 3929.678 kb on + strand at 3929.678 kb on + strand at 3929.679 kb on - strand at 3929.679 kb on - strand at 3929.765 kb on + strand, within Xcc-8004.4073.1 at 3929.858 kb on + strand, within Xcc-8004.4073.1 at 3929.858 kb on + strand, within Xcc-8004.4073.1 at 3929.858 kb on + strand, within Xcc-8004.4073.1 at 3929.859 kb on - strand, within Xcc-8004.4073.1 at 3929.859 kb on - strand, within Xcc-8004.4073.1 at 3929.859 kb on - strand, within Xcc-8004.4073.1 at 3929.859 kb on - strand, within Xcc-8004.4073.1 at 3929.859 kb on - strand, within Xcc-8004.4073.1 at 3929.863 kb on - strand, within Xcc-8004.4073.1 at 3929.900 kb on + strand, within Xcc-8004.4073.1 at 3929.900 kb on + strand, within Xcc-8004.4073.1 at 3929.900 kb on + strand, within Xcc-8004.4073.1 at 3929.900 kb on + strand, within Xcc-8004.4073.1 at 3929.900 kb on + strand, within Xcc-8004.4073.1 at 3929.901 kb on - strand, within Xcc-8004.4073.1 at 3929.901 kb on - strand, within Xcc-8004.4073.1 at 3929.901 kb on - strand, within Xcc-8004.4073.1 at 3929.901 kb on - strand, within Xcc-8004.4073.1 at 3929.901 kb on - strand, within Xcc-8004.4073.1 at 3929.901 kb on - strand, within Xcc-8004.4073.1 at 3930.113 kb on + strand, within Xcc-8004.4073.1 at 3930.113 kb on + strand, within Xcc-8004.4073.1 at 3930.113 kb on + strand, within Xcc-8004.4073.1 at 3930.114 kb on - strand, within Xcc-8004.4073.1 at 3930.163 kb on - strand, within Xcc-8004.4073.1 at 3930.163 kb on - strand, within Xcc-8004.4073.1 at 3930.299 kb on + strand, within Xcc-8004.4073.1 at 3930.299 kb on + strand, within Xcc-8004.4073.1 at 3930.300 kb on - strand, within Xcc-8004.4073.1 at 3930.305 kb on + strand, within Xcc-8004.4073.1 at 3930.305 kb on + strand, within Xcc-8004.4073.1 at 3930.305 kb on + strand, within Xcc-8004.4073.1 at 3930.305 kb on + strand, within Xcc-8004.4073.1 at 3930.306 kb on - strand, within Xcc-8004.4073.1 at 3930.306 kb on - strand, within Xcc-8004.4073.1 at 3930.306 kb on - strand, within Xcc-8004.4073.1 at 3930.461 kb on + strand, within Xcc-8004.4073.1 at 3930.461 kb on + strand, within Xcc-8004.4073.1 at 3930.461 kb on + strand, within Xcc-8004.4073.1 at 3930.461 kb on + strand, within Xcc-8004.4073.1 at 3930.462 kb on - strand, within Xcc-8004.4073.1 at 3930.462 kb on - strand, within Xcc-8004.4073.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 3,927,869 + Xcc-8004.4070.1 0.81 -0.4 3,927,869 + Xcc-8004.4070.1 0.81 -0.2 3,927,870 - Xcc-8004.4070.1 0.81 +0.9 3,927,954 - Xcc-8004.4070.1 0.88 -0.0 3,927,963 - Xcc-8004.4070.1 0.88 +1.2 3,927,963 - Xcc-8004.4070.1 0.88 +1.4 3,928,122 + +0.1 3,928,122 + -0.2 3,928,122 + -0.7 3,928,122 + +0.8 3,928,123 - +0.9 3,928,178 - -0.3 3,928,211 + +0.5 3,928,212 - -2.4 3,928,225 - +1.3 3,928,447 + Xcc-8004.4071.1 0.87 +1.3 3,928,447 + Xcc-8004.4071.1 0.87 +0.2 3,928,447 + Xcc-8004.4071.1 0.87 +0.2 3,928,447 + Xcc-8004.4071.1 0.87 -1.0 3,928,447 + Xcc-8004.4071.1 0.87 +0.9 3,928,448 - Xcc-8004.4071.1 0.87 -0.5 3,928,461 - +0.3 3,928,514 - -0.0 3,928,594 + -0.1 3,928,594 + +0.7 3,928,615 + +1.5 3,928,616 - -2.7 3,928,686 + +0.4 3,928,687 - -1.0 3,928,816 + Xcc-8004.4072.1 0.12 -0.2 3,929,110 + Xcc-8004.4072.1 0.46 +0.4 3,929,111 - Xcc-8004.4072.1 0.47 -1.1 3,929,194 + Xcc-8004.4072.1 0.56 +0.3 3,929,194 + Xcc-8004.4072.1 0.56 +0.4 3,929,194 + Xcc-8004.4072.1 0.56 -0.1 3,929,194 + Xcc-8004.4072.1 0.56 -0.4 3,929,195 - Xcc-8004.4072.1 0.56 -0.4 3,929,225 - Xcc-8004.4072.1 0.60 -1.8 3,929,307 - Xcc-8004.4072.1 0.70 +0.1 3,929,372 + Xcc-8004.4072.1 0.77 +0.3 3,929,372 + Xcc-8004.4072.1 0.77 +0.6 3,929,373 - Xcc-8004.4072.1 0.77 -0.2 3,929,654 + -3.1 3,929,654 + -1.0 3,929,655 - +0.1 3,929,678 + -2.3 3,929,678 + -0.4 3,929,678 + -1.1 3,929,679 - -2.0 3,929,679 - -1.6 3,929,765 + Xcc-8004.4073.1 0.12 -1.7 3,929,858 + Xcc-8004.4073.1 0.18 -2.6 3,929,858 + Xcc-8004.4073.1 0.18 -1.5 3,929,858 + Xcc-8004.4073.1 0.18 -0.6 3,929,859 - Xcc-8004.4073.1 0.18 -3.6 3,929,859 - Xcc-8004.4073.1 0.18 -1.9 3,929,859 - Xcc-8004.4073.1 0.18 -2.6 3,929,859 - Xcc-8004.4073.1 0.18 -1.3 3,929,859 - Xcc-8004.4073.1 0.18 -0.4 3,929,863 - Xcc-8004.4073.1 0.18 -1.3 3,929,900 + Xcc-8004.4073.1 0.21 -1.7 3,929,900 + Xcc-8004.4073.1 0.21 -2.3 3,929,900 + Xcc-8004.4073.1 0.21 -2.3 3,929,900 + Xcc-8004.4073.1 0.21 -1.4 3,929,900 + Xcc-8004.4073.1 0.21 -2.3 3,929,901 - Xcc-8004.4073.1 0.21 -2.2 3,929,901 - Xcc-8004.4073.1 0.21 -1.3 3,929,901 - Xcc-8004.4073.1 0.21 -2.2 3,929,901 - Xcc-8004.4073.1 0.21 -0.2 3,929,901 - Xcc-8004.4073.1 0.21 -3.0 3,929,901 - Xcc-8004.4073.1 0.21 -1.7 3,930,113 + Xcc-8004.4073.1 0.35 -2.0 3,930,113 + Xcc-8004.4073.1 0.35 -1.3 3,930,113 + Xcc-8004.4073.1 0.35 -0.8 3,930,114 - Xcc-8004.4073.1 0.35 -1.8 3,930,163 - Xcc-8004.4073.1 0.39 -2.6 3,930,163 - Xcc-8004.4073.1 0.39 -0.3 3,930,299 + Xcc-8004.4073.1 0.48 -1.4 3,930,299 + Xcc-8004.4073.1 0.48 -3.5 3,930,300 - Xcc-8004.4073.1 0.48 -1.1 3,930,305 + Xcc-8004.4073.1 0.48 -2.4 3,930,305 + Xcc-8004.4073.1 0.48 -0.8 3,930,305 + Xcc-8004.4073.1 0.48 -2.2 3,930,305 + Xcc-8004.4073.1 0.48 -2.9 3,930,306 - Xcc-8004.4073.1 0.48 +0.3 3,930,306 - Xcc-8004.4073.1 0.48 -1.1 3,930,306 - Xcc-8004.4073.1 0.48 -1.4 3,930,461 + Xcc-8004.4073.1 0.59 -1.3 3,930,461 + Xcc-8004.4073.1 0.59 -1.0 3,930,461 + Xcc-8004.4073.1 0.59 -2.4 3,930,461 + Xcc-8004.4073.1 0.59 -1.6 3,930,462 - Xcc-8004.4073.1 0.59 -2.1 3,930,462 - Xcc-8004.4073.1 0.59 -3.1
Or see this region's nucleotide sequence