Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3940.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3939.1 and Xcc-8004.3940.1 overlap by 4 nucleotidesXcc-8004.3940.1 and Xcc-8004.3941.1 are separated by 73 nucleotides Xcc-8004.3939.1: Xcc-8004.3939.1 - Putative DNA-binding protein in cluster with Type I restriction-modification system, at 3,814,061 to 3,815,155 Xcc-8004.3939.1 Xcc-8004.3940.1: Xcc-8004.3940.1 - Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72), at 3,815,152 to 3,817,338 Xcc-8004.3940.1 Xcc-8004.3941.1: Xcc-8004.3941.1 - putative restriction endonuclease, at 3,817,412 to 3,818,302 Xcc-8004.3941.1 Position (kb) 3815 3816 3817 3818Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3814.236 kb on + strand, within Xcc-8004.3939.1at 3814.674 kb on + strand, within Xcc-8004.3939.1at 3814.794 kb on + strand, within Xcc-8004.3939.1at 3814.949 kb on - strand, within Xcc-8004.3939.1at 3814.983 kb on + strand, within Xcc-8004.3939.1at 3814.984 kb on - strand, within Xcc-8004.3939.1at 3815.149 kb on + strandat 3815.150 kb on - strandat 3815.249 kb on + strandat 3815.249 kb on + strandat 3815.250 kb on - strandat 3815.250 kb on - strandat 3815.345 kb on + strandat 3815.345 kb on + strandat 3815.345 kb on + strandat 3815.345 kb on + strandat 3815.346 kb on - strandat 3815.547 kb on + strand, within Xcc-8004.3940.1at 3815.617 kb on + strand, within Xcc-8004.3940.1at 3815.633 kb on + strand, within Xcc-8004.3940.1at 3815.633 kb on + strand, within Xcc-8004.3940.1at 3815.787 kb on + strand, within Xcc-8004.3940.1at 3815.945 kb on + strand, within Xcc-8004.3940.1at 3816.113 kb on + strand, within Xcc-8004.3940.1at 3816.113 kb on + strand, within Xcc-8004.3940.1at 3816.113 kb on + strand, within Xcc-8004.3940.1at 3816.163 kb on + strand, within Xcc-8004.3940.1at 3816.163 kb on + strand, within Xcc-8004.3940.1at 3816.293 kb on + strand, within Xcc-8004.3940.1at 3816.594 kb on - strand, within Xcc-8004.3940.1at 3816.605 kb on + strand, within Xcc-8004.3940.1at 3816.606 kb on - strand, within Xcc-8004.3940.1at 3816.606 kb on - strand, within Xcc-8004.3940.1at 3816.606 kb on - strand, within Xcc-8004.3940.1at 3816.661 kb on + strand, within Xcc-8004.3940.1at 3816.662 kb on - strand, within Xcc-8004.3940.1at 3816.692 kb on + strand, within Xcc-8004.3940.1at 3816.692 kb on + strand, within Xcc-8004.3940.1at 3816.693 kb on - strand, within Xcc-8004.3940.1at 3816.693 kb on - strand, within Xcc-8004.3940.1at 3816.719 kb on + strand, within Xcc-8004.3940.1at 3816.719 kb on + strand, within Xcc-8004.3940.1at 3816.720 kb on - strand, within Xcc-8004.3940.1at 3817.008 kb on - strand, within Xcc-8004.3940.1at 3817.080 kb on - strand, within Xcc-8004.3940.1at 3817.285 kb on - strandat 3817.339 kb on + strandat 3817.339 kb on + strandat 3817.340 kb on - strandat 3817.485 kb on + strandat 3817.499 kb on + strandat 3817.630 kb on + strand, within Xcc-8004.3941.1at 3817.631 kb on - strand, within Xcc-8004.3941.1at 3817.785 kb on + strand, within Xcc-8004.3941.1at 3817.785 kb on + strand, within Xcc-8004.3941.1at 3817.851 kb on + strand, within Xcc-8004.3941.1at 3817.851 kb on + strand, within Xcc-8004.3941.1at 3817.980 kb on + strand, within Xcc-8004.3941.1at 3817.981 kb on - strand, within Xcc-8004.3941.1at 3818.177 kb on - strand, within Xcc-8004.3941.1at 3818.248 kb on + strandat 3818.304 kb on + strandat 3818.304 kb on + strandat 3818.304 kb on + strandat 3818.304 kb on + strandat 3818.304 kb on + strandat 3818.305 kb on - strandat 3818.305 kb on - strandat 3818.305 kb on - strandat 3818.305 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
remove
3,814,236 + Xcc-8004.3939.1 0.16 +0.2
3,814,674 + Xcc-8004.3939.1 0.56 -1.0
3,814,794 + Xcc-8004.3939.1 0.67 -1.6
3,814,949 - Xcc-8004.3939.1 0.81 +2.2
3,814,983 + Xcc-8004.3939.1 0.84 -0.0
3,814,984 - Xcc-8004.3939.1 0.84 +0.9
3,815,149 + +0.1
3,815,150 - +0.6
3,815,249 + +0.3
3,815,249 + +1.6
3,815,250 - +0.3
3,815,250 - -0.8
3,815,345 + +0.8
3,815,345 + +0.2
3,815,345 + -0.6
3,815,345 + +0.8
3,815,346 - +0.2
3,815,547 + Xcc-8004.3940.1 0.18 +0.1
3,815,617 + Xcc-8004.3940.1 0.21 -0.7
3,815,633 + Xcc-8004.3940.1 0.22 -0.6
3,815,633 + Xcc-8004.3940.1 0.22 -0.4
3,815,787 + Xcc-8004.3940.1 0.29 +0.2
3,815,945 + Xcc-8004.3940.1 0.36 -1.5
3,816,113 + Xcc-8004.3940.1 0.44 +0.4
3,816,113 + Xcc-8004.3940.1 0.44 +3.2
3,816,113 + Xcc-8004.3940.1 0.44 +1.4
3,816,163 + Xcc-8004.3940.1 0.46 +0.2
3,816,163 + Xcc-8004.3940.1 0.46 +0.1
3,816,293 + Xcc-8004.3940.1 0.52 +1.4
3,816,594 - Xcc-8004.3940.1 0.66 +0.1
3,816,605 + Xcc-8004.3940.1 0.66 -1.0
3,816,606 - Xcc-8004.3940.1 0.66 +0.1
3,816,606 - Xcc-8004.3940.1 0.66 -0.7
3,816,606 - Xcc-8004.3940.1 0.66 +0.8
3,816,661 + Xcc-8004.3940.1 0.69 +1.2
3,816,662 - Xcc-8004.3940.1 0.69 -0.8
3,816,692 + Xcc-8004.3940.1 0.70 -1.7
3,816,692 + Xcc-8004.3940.1 0.70 +1.7
3,816,693 - Xcc-8004.3940.1 0.70 +0.6
3,816,693 - Xcc-8004.3940.1 0.70 -0.6
3,816,719 + Xcc-8004.3940.1 0.72 +2.1
3,816,719 + Xcc-8004.3940.1 0.72 -0.2
3,816,720 - Xcc-8004.3940.1 0.72 +0.5
3,817,008 - Xcc-8004.3940.1 0.85 +1.0
3,817,080 - Xcc-8004.3940.1 0.88 +0.1
3,817,285 - +2.5
3,817,339 + +1.7
3,817,339 + +1.2
3,817,340 - +0.4
3,817,485 + -0.7
3,817,499 + -0.6
3,817,630 + Xcc-8004.3941.1 0.24 -0.3
3,817,631 - Xcc-8004.3941.1 0.25 +0.8
3,817,785 + Xcc-8004.3941.1 0.42 +0.6
3,817,785 + Xcc-8004.3941.1 0.42 -2.3
3,817,851 + Xcc-8004.3941.1 0.49 -0.1
3,817,851 + Xcc-8004.3941.1 0.49 +0.0
3,817,980 + Xcc-8004.3941.1 0.64 +1.2
3,817,981 - Xcc-8004.3941.1 0.64 +1.0
3,818,177 - Xcc-8004.3941.1 0.86 +1.0
3,818,248 + +1.3
3,818,304 + +0.9
3,818,304 + -0.4
3,818,304 + +0.3
3,818,304 + -2.2
3,818,304 + +0.2
3,818,305 - +0.3
3,818,305 - -0.4
3,818,305 - +1.3
3,818,305 - -0.3

Or see this region's nucleotide sequence