Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3624.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3623.1 and Xcc-8004.3624.1 are separated by 422 nucleotidesXcc-8004.3624.1 and Xcc-8004.3626.1 are separated by 528 nucleotides Xcc-8004.3623.1: Xcc-8004.3623.1 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 3,509,217 to 3,510,311 Xcc-8004.3623.1 Xcc-8004.3624.1: Xcc-8004.3624.1 - FIG01210604: hypothetical protein, at 3,510,734 to 3,511,783 Xcc-8004.3624.1 Xcc-8004.3626.1: Xcc-8004.3626.1 - putative; ORF located using Glimmer/Genemark, at 3,512,312 to 3,513,265 Xcc-8004.3626.1 Position (kb) 3510 3511 3512Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3509.818 kb on - strand, within Xcc-8004.3623.1at 3509.931 kb on + strand, within Xcc-8004.3623.1at 3509.931 kb on + strand, within Xcc-8004.3623.1at 3509.931 kb on + strand, within Xcc-8004.3623.1at 3509.931 kb on + strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3510.067 kb on - strand, within Xcc-8004.3623.1at 3510.117 kb on + strand, within Xcc-8004.3623.1at 3510.117 kb on + strand, within Xcc-8004.3623.1at 3510.118 kb on - strand, within Xcc-8004.3623.1at 3510.186 kb on + strand, within Xcc-8004.3623.1at 3510.186 kb on + strand, within Xcc-8004.3623.1at 3510.186 kb on + strand, within Xcc-8004.3623.1at 3510.186 kb on + strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.208 kb on + strandat 3510.261 kb on + strandat 3510.261 kb on + strandat 3510.262 kb on - strandat 3510.282 kb on + strandat 3510.282 kb on + strandat 3510.283 kb on - strandat 3510.651 kb on + strandat 3510.652 kb on - strandat 3510.938 kb on + strand, within Xcc-8004.3624.1at 3510.938 kb on + strand, within Xcc-8004.3624.1at 3510.945 kb on - strand, within Xcc-8004.3624.1at 3511.061 kb on + strand, within Xcc-8004.3624.1at 3511.061 kb on + strand, within Xcc-8004.3624.1at 3511.061 kb on + strand, within Xcc-8004.3624.1at 3511.062 kb on - strand, within Xcc-8004.3624.1at 3511.062 kb on - strand, within Xcc-8004.3624.1at 3511.062 kb on - strand, within Xcc-8004.3624.1at 3511.062 kb on - strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.222 kb on - strand, within Xcc-8004.3624.1at 3511.222 kb on - strand, within Xcc-8004.3624.1at 3511.222 kb on - strand, within Xcc-8004.3624.1at 3511.222 kb on - strand, within Xcc-8004.3624.1at 3511.340 kb on + strand, within Xcc-8004.3624.1at 3511.340 kb on + strand, within Xcc-8004.3624.1at 3511.340 kb on + strand, within Xcc-8004.3624.1at 3511.340 kb on + strand, within Xcc-8004.3624.1at 3511.340 kb on + strand, within Xcc-8004.3624.1at 3511.340 kb on + strand, within Xcc-8004.3624.1at 3511.341 kb on - strand, within Xcc-8004.3624.1at 3511.341 kb on - strand, within Xcc-8004.3624.1at 3511.341 kb on - strand, within Xcc-8004.3624.1at 3511.341 kb on - strand, within Xcc-8004.3624.1at 3511.341 kb on - strand, within Xcc-8004.3624.1at 3511.418 kb on + strand, within Xcc-8004.3624.1at 3511.419 kb on - strand, within Xcc-8004.3624.1at 3511.419 kb on - strand, within Xcc-8004.3624.1at 3511.816 kb on - strandat 3511.825 kb on + strandat 3511.826 kb on - strandat 3511.826 kb on - strandat 3511.826 kb on - strandat 3511.944 kb on - strandat 3511.960 kb on + strandat 3511.961 kb on - strandat 3512.026 kb on - strandat 3512.159 kb on + strandat 3512.159 kb on + strandat 3512.373 kb on + strandat 3512.377 kb on + strandat 3512.377 kb on + strandat 3512.377 kb on + strandat 3512.378 kb on - strandat 3512.378 kb on - strandat 3512.378 kb on - strandat 3512.516 kb on + strand, within Xcc-8004.3626.1at 3512.517 kb on - strand, within Xcc-8004.3626.1at 3512.517 kb on - strand, within Xcc-8004.3626.1at 3512.517 kb on - strand, within Xcc-8004.3626.1at 3512.604 kb on + strand, within Xcc-8004.3626.1at 3512.604 kb on + strand, within Xcc-8004.3626.1at 3512.604 kb on + strand, within Xcc-8004.3626.1at 3512.604 kb on + strand, within Xcc-8004.3626.1at 3512.605 kb on - strand, within Xcc-8004.3626.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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3,509,818 - Xcc-8004.3623.1 0.55 -0.3
3,509,931 + Xcc-8004.3623.1 0.65 +0.4
3,509,931 + Xcc-8004.3623.1 0.65 -0.8
3,509,931 + Xcc-8004.3623.1 0.65 +1.3
3,509,931 + Xcc-8004.3623.1 0.65 -1.0
3,509,932 - Xcc-8004.3623.1 0.65 -0.7
3,509,932 - Xcc-8004.3623.1 0.65 +0.8
3,509,932 - Xcc-8004.3623.1 0.65 -0.3
3,509,932 - Xcc-8004.3623.1 0.65 -0.7
3,509,932 - Xcc-8004.3623.1 0.65 +1.8
3,509,932 - Xcc-8004.3623.1 0.65 -2.4
3,509,932 - Xcc-8004.3623.1 0.65 +1.8
3,509,932 - Xcc-8004.3623.1 0.65 -0.2
3,509,932 - Xcc-8004.3623.1 0.65 +1.4
3,510,067 - Xcc-8004.3623.1 0.78 -0.7
3,510,117 + Xcc-8004.3623.1 0.82 +0.5
3,510,117 + Xcc-8004.3623.1 0.82 -1.2
3,510,118 - Xcc-8004.3623.1 0.82 -0.3
3,510,186 + Xcc-8004.3623.1 0.88 -0.3
3,510,186 + Xcc-8004.3623.1 0.88 -1.1
3,510,186 + Xcc-8004.3623.1 0.88 -1.3
3,510,186 + Xcc-8004.3623.1 0.88 -0.6
3,510,187 - Xcc-8004.3623.1 0.89 +0.7
3,510,187 - Xcc-8004.3623.1 0.89 -0.8
3,510,187 - Xcc-8004.3623.1 0.89 +1.1
3,510,187 - Xcc-8004.3623.1 0.89 +0.1
3,510,187 - Xcc-8004.3623.1 0.89 -2.0
3,510,187 - Xcc-8004.3623.1 0.89 +0.3
3,510,187 - Xcc-8004.3623.1 0.89 -0.5
3,510,187 - Xcc-8004.3623.1 0.89 +0.6
3,510,208 + +1.0
3,510,261 + +0.2
3,510,261 + -0.0
3,510,262 - +0.5
3,510,282 + +0.8
3,510,282 + +0.5
3,510,283 - +0.6
3,510,651 + -0.4
3,510,652 - -3.0
3,510,938 + Xcc-8004.3624.1 0.19 -2.1
3,510,938 + Xcc-8004.3624.1 0.19 -2.5
3,510,945 - Xcc-8004.3624.1 0.20 -0.7
3,511,061 + Xcc-8004.3624.1 0.31 +1.3
3,511,061 + Xcc-8004.3624.1 0.31 -0.2
3,511,061 + Xcc-8004.3624.1 0.31 -0.2
3,511,062 - Xcc-8004.3624.1 0.31 -0.6
3,511,062 - Xcc-8004.3624.1 0.31 +1.8
3,511,062 - Xcc-8004.3624.1 0.31 -0.2
3,511,062 - Xcc-8004.3624.1 0.31 +0.7
3,511,221 + Xcc-8004.3624.1 0.46 +1.1
3,511,221 + Xcc-8004.3624.1 0.46 -0.3
3,511,221 + Xcc-8004.3624.1 0.46 +0.5
3,511,221 + Xcc-8004.3624.1 0.46 +0.5
3,511,221 + Xcc-8004.3624.1 0.46 -0.0
3,511,221 + Xcc-8004.3624.1 0.46 -1.7
3,511,221 + Xcc-8004.3624.1 0.46 +0.6
3,511,222 - Xcc-8004.3624.1 0.46 +0.3
3,511,222 - Xcc-8004.3624.1 0.46 -0.9
3,511,222 - Xcc-8004.3624.1 0.46 -1.7
3,511,222 - Xcc-8004.3624.1 0.46 +1.5
3,511,340 + Xcc-8004.3624.1 0.58 -0.8
3,511,340 + Xcc-8004.3624.1 0.58 +0.5
3,511,340 + Xcc-8004.3624.1 0.58 +0.7
3,511,340 + Xcc-8004.3624.1 0.58 +0.1
3,511,340 + Xcc-8004.3624.1 0.58 -0.4
3,511,340 + Xcc-8004.3624.1 0.58 -0.1
3,511,341 - Xcc-8004.3624.1 0.58 -0.8
3,511,341 - Xcc-8004.3624.1 0.58 +1.7
3,511,341 - Xcc-8004.3624.1 0.58 +2.0
3,511,341 - Xcc-8004.3624.1 0.58 +0.4
3,511,341 - Xcc-8004.3624.1 0.58 +0.4
3,511,418 + Xcc-8004.3624.1 0.65 +1.2
3,511,419 - Xcc-8004.3624.1 0.65 -2.6
3,511,419 - Xcc-8004.3624.1 0.65 -0.8
3,511,816 - +0.2
3,511,825 + +0.8
3,511,826 - +0.2
3,511,826 - -1.3
3,511,826 - -0.1
3,511,944 - +0.2
3,511,960 + +0.3
3,511,961 - -1.5
3,512,026 - -0.5
3,512,159 + -1.1
3,512,159 + +2.0
3,512,373 + +1.2
3,512,377 + -2.4
3,512,377 + -0.5
3,512,377 + +0.6
3,512,378 - +0.0
3,512,378 - -0.2
3,512,378 - -1.5
3,512,516 + Xcc-8004.3626.1 0.21 -0.7
3,512,517 - Xcc-8004.3626.1 0.21 -0.4
3,512,517 - Xcc-8004.3626.1 0.21 -0.4
3,512,517 - Xcc-8004.3626.1 0.21 +2.6
3,512,604 + Xcc-8004.3626.1 0.31 -1.4
3,512,604 + Xcc-8004.3626.1 0.31 -1.0
3,512,604 + Xcc-8004.3626.1 0.31 -0.5
3,512,604 + Xcc-8004.3626.1 0.31 +2.0
3,512,605 - Xcc-8004.3626.1 0.31 -0.0

Or see this region's nucleotide sequence