Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3166.1 and Xcc-8004.3167.1 are separated by 124 nucleotides Xcc-8004.3167.1 and Xcc-8004.3168.1 overlap by 4 nucleotides
Xcc-8004.3166.1: Xcc-8004.3166.1 - Glycosyltransferase, at 3,086,363 to 3,087,487
Xcc-8004.3166.1
Xcc-8004.3167.1: Xcc-8004.3167.1 - biotin synthesis protein, at 3,087,612 to 3,088,322
Xcc-8004.3167.1
Xcc-8004.3168.1: Xcc-8004.3168.1 - chlorohydrolase family protein, at 3,088,319 to 3,089,545
Xcc-8004.3168.1
Position (kb) 3087
3088
3089 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3086.622 kb on + strand, within Xcc-8004.3166.1 at 3086.622 kb on + strand, within Xcc-8004.3166.1 at 3086.622 kb on + strand, within Xcc-8004.3166.1 at 3086.622 kb on + strand, within Xcc-8004.3166.1 at 3086.623 kb on - strand, within Xcc-8004.3166.1 at 3086.640 kb on + strand, within Xcc-8004.3166.1 at 3086.640 kb on + strand, within Xcc-8004.3166.1 at 3087.215 kb on + strand, within Xcc-8004.3166.1 at 3087.215 kb on + strand, within Xcc-8004.3166.1 at 3087.216 kb on - strand, within Xcc-8004.3166.1 at 3087.216 kb on - strand, within Xcc-8004.3166.1 at 3087.216 kb on - strand, within Xcc-8004.3166.1 at 3087.216 kb on - strand, within Xcc-8004.3166.1 at 3087.216 kb on - strand, within Xcc-8004.3166.1 at 3087.216 kb on - strand, within Xcc-8004.3166.1 at 3087.216 kb on - strand, within Xcc-8004.3166.1 at 3087.216 kb on - strand, within Xcc-8004.3166.1 at 3087.273 kb on - strand, within Xcc-8004.3166.1 at 3087.429 kb on - strand at 3087.634 kb on - strand at 3087.773 kb on - strand, within Xcc-8004.3167.1 at 3087.799 kb on + strand, within Xcc-8004.3167.1 at 3087.800 kb on - strand, within Xcc-8004.3167.1 at 3087.800 kb on - strand, within Xcc-8004.3167.1 at 3088.135 kb on + strand, within Xcc-8004.3167.1 at 3088.135 kb on + strand, within Xcc-8004.3167.1 at 3088.136 kb on - strand, within Xcc-8004.3167.1 at 3088.273 kb on + strand at 3088.273 kb on + strand at 3088.274 kb on - strand at 3088.274 kb on - strand at 3089.073 kb on + strand, within Xcc-8004.3168.1 at 3089.073 kb on + strand, within Xcc-8004.3168.1 at 3089.094 kb on + strand, within Xcc-8004.3168.1 at 3089.094 kb on + strand, within Xcc-8004.3168.1 at 3089.094 kb on + strand, within Xcc-8004.3168.1 at 3089.094 kb on + strand, within Xcc-8004.3168.1 at 3089.094 kb on + strand, within Xcc-8004.3168.1 at 3089.095 kb on - strand, within Xcc-8004.3168.1 at 3089.182 kb on + strand, within Xcc-8004.3168.1 at 3089.182 kb on + strand, within Xcc-8004.3168.1 at 3089.183 kb on - strand, within Xcc-8004.3168.1 at 3089.225 kb on + strand, within Xcc-8004.3168.1 at 3089.225 kb on + strand, within Xcc-8004.3168.1 at 3089.226 kb on - strand, within Xcc-8004.3168.1 at 3089.226 kb on - strand, within Xcc-8004.3168.1 at 3089.226 kb on - strand, within Xcc-8004.3168.1 at 3089.226 kb on - strand, within Xcc-8004.3168.1 at 3089.301 kb on + strand, within Xcc-8004.3168.1 at 3089.301 kb on + strand, within Xcc-8004.3168.1 at 3089.301 kb on + strand, within Xcc-8004.3168.1 at 3089.301 kb on + strand, within Xcc-8004.3168.1 at 3089.301 kb on + strand, within Xcc-8004.3168.1 at 3089.302 kb on - strand, within Xcc-8004.3168.1 at 3089.302 kb on - strand, within Xcc-8004.3168.1 at 3089.302 kb on - strand, within Xcc-8004.3168.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 3,086,622 + Xcc-8004.3166.1 0.23 -0.5 3,086,622 + Xcc-8004.3166.1 0.23 +0.6 3,086,622 + Xcc-8004.3166.1 0.23 +0.9 3,086,622 + Xcc-8004.3166.1 0.23 -1.0 3,086,623 - Xcc-8004.3166.1 0.23 +0.3 3,086,640 + Xcc-8004.3166.1 0.25 +0.1 3,086,640 + Xcc-8004.3166.1 0.25 -0.1 3,087,215 + Xcc-8004.3166.1 0.76 -0.2 3,087,215 + Xcc-8004.3166.1 0.76 +1.8 3,087,216 - Xcc-8004.3166.1 0.76 +1.6 3,087,216 - Xcc-8004.3166.1 0.76 +0.8 3,087,216 - Xcc-8004.3166.1 0.76 -1.0 3,087,216 - Xcc-8004.3166.1 0.76 +0.0 3,087,216 - Xcc-8004.3166.1 0.76 -1.4 3,087,216 - Xcc-8004.3166.1 0.76 -0.8 3,087,216 - Xcc-8004.3166.1 0.76 +0.5 3,087,216 - Xcc-8004.3166.1 0.76 -2.9 3,087,273 - Xcc-8004.3166.1 0.81 -1.6 3,087,429 - +0.2 3,087,634 - -0.1 3,087,773 - Xcc-8004.3167.1 0.23 -1.0 3,087,799 + Xcc-8004.3167.1 0.26 -0.5 3,087,800 - Xcc-8004.3167.1 0.26 -0.2 3,087,800 - Xcc-8004.3167.1 0.26 -1.3 3,088,135 + Xcc-8004.3167.1 0.74 -0.5 3,088,135 + Xcc-8004.3167.1 0.74 -1.5 3,088,136 - Xcc-8004.3167.1 0.74 -1.1 3,088,273 + +0.6 3,088,273 + -1.3 3,088,274 - +1.7 3,088,274 - -0.3 3,089,073 + Xcc-8004.3168.1 0.61 +2.5 3,089,073 + Xcc-8004.3168.1 0.61 -1.5 3,089,094 + Xcc-8004.3168.1 0.63 -2.0 3,089,094 + Xcc-8004.3168.1 0.63 +0.7 3,089,094 + Xcc-8004.3168.1 0.63 -0.2 3,089,094 + Xcc-8004.3168.1 0.63 -0.4 3,089,094 + Xcc-8004.3168.1 0.63 +0.8 3,089,095 - Xcc-8004.3168.1 0.63 -0.7 3,089,182 + Xcc-8004.3168.1 0.70 -2.3 3,089,182 + Xcc-8004.3168.1 0.70 -0.7 3,089,183 - Xcc-8004.3168.1 0.70 +1.1 3,089,225 + Xcc-8004.3168.1 0.74 -2.7 3,089,225 + Xcc-8004.3168.1 0.74 +0.1 3,089,226 - Xcc-8004.3168.1 0.74 -0.9 3,089,226 - Xcc-8004.3168.1 0.74 -0.2 3,089,226 - Xcc-8004.3168.1 0.74 -1.3 3,089,226 - Xcc-8004.3168.1 0.74 -0.7 3,089,301 + Xcc-8004.3168.1 0.80 +1.4 3,089,301 + Xcc-8004.3168.1 0.80 -1.9 3,089,301 + Xcc-8004.3168.1 0.80 +1.7 3,089,301 + Xcc-8004.3168.1 0.80 -0.9 3,089,301 + Xcc-8004.3168.1 0.80 -0.7 3,089,302 - Xcc-8004.3168.1 0.80 +0.7 3,089,302 - Xcc-8004.3168.1 0.80 -0.7 3,089,302 - Xcc-8004.3168.1 0.80 -0.5
Or see this region's nucleotide sequence