Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2898.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2897.1 and Xcc-8004.2898.1 are separated by 12 nucleotidesXcc-8004.2898.1 and Xcc-8004.2899.1 are separated by 7 nucleotidesXcc-8004.2899.1 and Xcc-8004.2900.1 are separated by 10 nucleotides Xcc-8004.2897.1: Xcc-8004.2897.1 - RpfF protein, at 2,819,741 to 2,820,610 Xcc-8004.2897.1 Xcc-8004.2898.1: Xcc-8004.2898.1 - Sensory/regulatory protein rpfC (EC 2.7.3.-), at 2,820,623 to 2,822,803 Xcc-8004.2898.1 Xcc-8004.2899.1: Xcc-8004.2899.1 - Sensory/regulatory protein rpfC (EC 2.7.3.-), at 2,822,811 to 2,823,425 Xcc-8004.2899.1 Xcc-8004.2900.1: Xcc-8004.2900.1 - response regulator, at 2,823,436 to 2,824,572 Xcc-8004.2900.1 Position (kb) 2820 2821 2822 2823Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 2819.654 kb on + strandat 2819.654 kb on + strandat 2819.654 kb on + strandat 2819.654 kb on + strandat 2819.655 kb on - strandat 2819.692 kb on + strandat 2819.692 kb on + strandat 2819.693 kb on - strandat 2819.693 kb on - strandat 2819.767 kb on + strandat 2819.768 kb on - strandat 2819.768 kb on - strandat 2819.773 kb on + strandat 2819.787 kb on + strandat 2819.788 kb on - strandat 2819.819 kb on + strandat 2819.820 kb on - strandat 2819.820 kb on - strandat 2819.830 kb on + strand, within Xcc-8004.2897.1at 2819.830 kb on + strand, within Xcc-8004.2897.1at 2819.830 kb on + strand, within Xcc-8004.2897.1at 2819.831 kb on - strand, within Xcc-8004.2897.1at 2819.831 kb on - strand, within Xcc-8004.2897.1at 2819.831 kb on - strand, within Xcc-8004.2897.1at 2819.831 kb on - strand, within Xcc-8004.2897.1at 2819.932 kb on + strand, within Xcc-8004.2897.1at 2819.932 kb on + strand, within Xcc-8004.2897.1at 2819.933 kb on - strand, within Xcc-8004.2897.1at 2820.056 kb on + strand, within Xcc-8004.2897.1at 2820.171 kb on + strand, within Xcc-8004.2897.1at 2820.172 kb on - strand, within Xcc-8004.2897.1at 2820.172 kb on - strand, within Xcc-8004.2897.1at 2820.172 kb on - strand, within Xcc-8004.2897.1at 2820.237 kb on + strand, within Xcc-8004.2897.1at 2820.237 kb on + strand, within Xcc-8004.2897.1at 2820.238 kb on - strand, within Xcc-8004.2897.1at 2820.238 kb on - strand, within Xcc-8004.2897.1at 2820.238 kb on - strand, within Xcc-8004.2897.1at 2820.257 kb on + strand, within Xcc-8004.2897.1at 2820.257 kb on + strand, within Xcc-8004.2897.1at 2820.258 kb on - strand, within Xcc-8004.2897.1at 2820.323 kb on + strand, within Xcc-8004.2897.1at 2820.516 kb on + strand, within Xcc-8004.2897.1at 2820.520 kb on + strand, within Xcc-8004.2897.1at 2820.520 kb on + strand, within Xcc-8004.2897.1at 2820.520 kb on + strand, within Xcc-8004.2897.1at 2820.520 kb on + strand, within Xcc-8004.2897.1at 2820.521 kb on - strand, within Xcc-8004.2897.1at 2820.521 kb on - strand, within Xcc-8004.2897.1at 2820.553 kb on + strandat 2820.553 kb on + strandat 2820.554 kb on - strandat 2820.554 kb on - strandat 2820.554 kb on - strandat 2820.624 kb on + strandat 2820.624 kb on + strandat 2820.625 kb on - strandat 2820.625 kb on - strandat 2820.625 kb on - strandat 2821.195 kb on - strand, within Xcc-8004.2898.1at 2821.287 kb on + strand, within Xcc-8004.2898.1at 2821.346 kb on - strand, within Xcc-8004.2898.1at 2821.346 kb on - strand, within Xcc-8004.2898.1at 2821.420 kb on + strand, within Xcc-8004.2898.1at 2821.420 kb on + strand, within Xcc-8004.2898.1at 2821.421 kb on - strand, within Xcc-8004.2898.1at 2821.421 kb on - strand, within Xcc-8004.2898.1at 2821.527 kb on - strand, within Xcc-8004.2898.1at 2821.634 kb on + strand, within Xcc-8004.2898.1at 2821.635 kb on - strand, within Xcc-8004.2898.1at 2821.678 kb on - strand, within Xcc-8004.2898.1at 2821.880 kb on + strand, within Xcc-8004.2898.1at 2821.948 kb on - strand, within Xcc-8004.2898.1at 2822.065 kb on + strand, within Xcc-8004.2898.1at 2822.218 kb on + strand, within Xcc-8004.2898.1at 2822.219 kb on - strand, within Xcc-8004.2898.1at 2822.288 kb on + strand, within Xcc-8004.2898.1at 2822.288 kb on + strand, within Xcc-8004.2898.1at 2822.304 kb on + strand, within Xcc-8004.2898.1at 2822.305 kb on - strand, within Xcc-8004.2898.1at 2822.305 kb on - strand, within Xcc-8004.2898.1at 2822.350 kb on - strand, within Xcc-8004.2898.1at 2822.350 kb on - strand, within Xcc-8004.2898.1at 2822.431 kb on - strand, within Xcc-8004.2898.1at 2822.431 kb on - strand, within Xcc-8004.2898.1at 2822.431 kb on - strand, within Xcc-8004.2898.1at 2822.484 kb on + strand, within Xcc-8004.2898.1at 2822.484 kb on + strand, within Xcc-8004.2898.1at 2822.484 kb on + strand, within Xcc-8004.2898.1at 2822.484 kb on + strand, within Xcc-8004.2898.1at 2822.485 kb on - strand, within Xcc-8004.2898.1at 2822.485 kb on - strand, within Xcc-8004.2898.1at 2822.538 kb on + strand, within Xcc-8004.2898.1at 2822.538 kb on + strand, within Xcc-8004.2898.1at 2822.538 kb on + strand, within Xcc-8004.2898.1at 2822.538 kb on + strand, within Xcc-8004.2898.1at 2822.539 kb on - strand, within Xcc-8004.2898.1at 2822.663 kb on - strandat 2822.698 kb on - strandat 2822.698 kb on - strandat 2822.803 kb on + strandat 2822.804 kb on - strandat 2822.804 kb on - strandat 2822.870 kb on + strandat 2822.870 kb on + strandat 2822.871 kb on - strandat 2822.919 kb on - strand, within Xcc-8004.2899.1at 2822.933 kb on + strand, within Xcc-8004.2899.1at 2822.933 kb on + strand, within Xcc-8004.2899.1at 2822.933 kb on + strand, within Xcc-8004.2899.1at 2822.933 kb on + strand, within Xcc-8004.2899.1at 2822.934 kb on - strand, within Xcc-8004.2899.1at 2822.934 kb on - strand, within Xcc-8004.2899.1at 2822.934 kb on - strand, within Xcc-8004.2899.1at 2822.934 kb on - strand, within Xcc-8004.2899.1at 2822.934 kb on - strand, within Xcc-8004.2899.1at 2822.992 kb on + strand, within Xcc-8004.2899.1at 2822.992 kb on + strand, within Xcc-8004.2899.1at 2822.992 kb on + strand, within Xcc-8004.2899.1at 2822.993 kb on - strand, within Xcc-8004.2899.1at 2822.993 kb on - strand, within Xcc-8004.2899.1at 2823.000 kb on - strand, within Xcc-8004.2899.1at 2823.000 kb on - strand, within Xcc-8004.2899.1at 2823.000 kb on - strand, within Xcc-8004.2899.1at 2823.000 kb on - strand, within Xcc-8004.2899.1at 2823.047 kb on + strand, within Xcc-8004.2899.1at 2823.048 kb on - strand, within Xcc-8004.2899.1at 2823.109 kb on + strand, within Xcc-8004.2899.1at 2823.109 kb on + strand, within Xcc-8004.2899.1at 2823.109 kb on + strand, within Xcc-8004.2899.1at 2823.109 kb on + strand, within Xcc-8004.2899.1at 2823.110 kb on - strand, within Xcc-8004.2899.1at 2823.110 kb on - strand, within Xcc-8004.2899.1at 2823.110 kb on - strand, within Xcc-8004.2899.1at 2823.110 kb on - strand, within Xcc-8004.2899.1at 2823.111 kb on + strand, within Xcc-8004.2899.1at 2823.111 kb on + strand, within Xcc-8004.2899.1at 2823.112 kb on - strand, within Xcc-8004.2899.1at 2823.112 kb on - strand, within Xcc-8004.2899.1at 2823.112 kb on - strand, within Xcc-8004.2899.1at 2823.112 kb on - strand, within Xcc-8004.2899.1at 2823.112 kb on - strand, within Xcc-8004.2899.1at 2823.112 kb on - strand, within Xcc-8004.2899.1at 2823.163 kb on + strand, within Xcc-8004.2899.1at 2823.163 kb on + strand, within Xcc-8004.2899.1at 2823.163 kb on + strand, within Xcc-8004.2899.1at 2823.163 kb on + strand, within Xcc-8004.2899.1at 2823.164 kb on - strand, within Xcc-8004.2899.1at 2823.328 kb on + strand, within Xcc-8004.2899.1at 2823.328 kb on + strand, within Xcc-8004.2899.1at 2823.328 kb on + strand, within Xcc-8004.2899.1at 2823.360 kb on + strand, within Xcc-8004.2899.1at 2823.360 kb on + strand, within Xcc-8004.2899.1at 2823.361 kb on - strand, within Xcc-8004.2899.1at 2823.554 kb on + strand, within Xcc-8004.2900.1at 2823.554 kb on + strand, within Xcc-8004.2900.1at 2823.555 kb on - strand, within Xcc-8004.2900.1at 2823.555 kb on - strand, within Xcc-8004.2900.1at 2823.555 kb on - strand, within Xcc-8004.2900.1at 2823.555 kb on - strand, within Xcc-8004.2900.1at 2823.561 kb on - strand, within Xcc-8004.2900.1at 2823.561 kb on - strand, within Xcc-8004.2900.1at 2823.565 kb on + strand, within Xcc-8004.2900.1at 2823.565 kb on + strand, within Xcc-8004.2900.1at 2823.566 kb on - strand, within Xcc-8004.2900.1at 2823.596 kb on + strand, within Xcc-8004.2900.1at 2823.596 kb on + strand, within Xcc-8004.2900.1at 2823.596 kb on + strand, within Xcc-8004.2900.1at 2823.596 kb on + strand, within Xcc-8004.2900.1at 2823.597 kb on - strand, within Xcc-8004.2900.1at 2823.597 kb on - strand, within Xcc-8004.2900.1at 2823.597 kb on - strand, within Xcc-8004.2900.1at 2823.597 kb on - strand, within Xcc-8004.2900.1at 2823.779 kb on + strand, within Xcc-8004.2900.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
remove
2,819,654 + -2.6
2,819,654 + +1.8
2,819,654 + +0.5
2,819,654 + +0.1
2,819,655 - -0.5
2,819,692 + -2.3
2,819,692 + +0.0
2,819,693 - +1.1
2,819,693 - -3.9
2,819,767 + -0.9
2,819,768 - +0.8
2,819,768 - +0.4
2,819,773 + -0.6
2,819,787 + -0.5
2,819,788 - +1.0
2,819,819 + -0.2
2,819,820 - -0.8
2,819,820 - +0.2
2,819,830 + Xcc-8004.2897.1 0.10 -0.9
2,819,830 + Xcc-8004.2897.1 0.10 -0.3
2,819,830 + Xcc-8004.2897.1 0.10 -0.4
2,819,831 - Xcc-8004.2897.1 0.10 -3.0
2,819,831 - Xcc-8004.2897.1 0.10 +0.1
2,819,831 - Xcc-8004.2897.1 0.10 -2.3
2,819,831 - Xcc-8004.2897.1 0.10 +0.6
2,819,932 + Xcc-8004.2897.1 0.22 -1.1
2,819,932 + Xcc-8004.2897.1 0.22 -0.9
2,819,933 - Xcc-8004.2897.1 0.22 -2.4
2,820,056 + Xcc-8004.2897.1 0.36 +1.1
2,820,171 + Xcc-8004.2897.1 0.49 -0.6
2,820,172 - Xcc-8004.2897.1 0.50 -2.3
2,820,172 - Xcc-8004.2897.1 0.50 +0.4
2,820,172 - Xcc-8004.2897.1 0.50 -2.3
2,820,237 + Xcc-8004.2897.1 0.57 -0.3
2,820,237 + Xcc-8004.2897.1 0.57 -0.9
2,820,238 - Xcc-8004.2897.1 0.57 -0.1
2,820,238 - Xcc-8004.2897.1 0.57 -0.1
2,820,238 - Xcc-8004.2897.1 0.57 -0.6
2,820,257 + Xcc-8004.2897.1 0.59 -0.9
2,820,257 + Xcc-8004.2897.1 0.59 -0.1
2,820,258 - Xcc-8004.2897.1 0.59 +0.8
2,820,323 + Xcc-8004.2897.1 0.67 +0.5
2,820,516 + Xcc-8004.2897.1 0.89 -0.0
2,820,520 + Xcc-8004.2897.1 0.90 -1.9
2,820,520 + Xcc-8004.2897.1 0.90 -2.0
2,820,520 + Xcc-8004.2897.1 0.90 +1.5
2,820,520 + Xcc-8004.2897.1 0.90 -1.0
2,820,521 - Xcc-8004.2897.1 0.90 -0.0
2,820,521 - Xcc-8004.2897.1 0.90 +2.1
2,820,553 + -0.3
2,820,553 + +0.7
2,820,554 - -0.5
2,820,554 - -2.2
2,820,554 - +1.7
2,820,624 + -1.2
2,820,624 + -0.2
2,820,625 - +0.9
2,820,625 - -0.4
2,820,625 - -0.2
2,821,195 - Xcc-8004.2898.1 0.26 +3.8
2,821,287 + Xcc-8004.2898.1 0.30 +3.1
2,821,346 - Xcc-8004.2898.1 0.33 +6.3
2,821,346 - Xcc-8004.2898.1 0.33 +5.1
2,821,420 + Xcc-8004.2898.1 0.37 +3.0
2,821,420 + Xcc-8004.2898.1 0.37 +2.7
2,821,421 - Xcc-8004.2898.1 0.37 +2.6
2,821,421 - Xcc-8004.2898.1 0.37 +3.3
2,821,527 - Xcc-8004.2898.1 0.41 +3.7
2,821,634 + Xcc-8004.2898.1 0.46 +4.7
2,821,635 - Xcc-8004.2898.1 0.46 +2.8
2,821,678 - Xcc-8004.2898.1 0.48 +4.8
2,821,880 + Xcc-8004.2898.1 0.58 +5.1
2,821,948 - Xcc-8004.2898.1 0.61 +3.4
2,822,065 + Xcc-8004.2898.1 0.66 +3.2
2,822,218 + Xcc-8004.2898.1 0.73 +4.4
2,822,219 - Xcc-8004.2898.1 0.73 +2.7
2,822,288 + Xcc-8004.2898.1 0.76 +4.9
2,822,288 + Xcc-8004.2898.1 0.76 +1.8
2,822,304 + Xcc-8004.2898.1 0.77 +1.8
2,822,305 - Xcc-8004.2898.1 0.77 +2.8
2,822,305 - Xcc-8004.2898.1 0.77 +1.5
2,822,350 - Xcc-8004.2898.1 0.79 +1.4
2,822,350 - Xcc-8004.2898.1 0.79 +2.9
2,822,431 - Xcc-8004.2898.1 0.83 +3.0
2,822,431 - Xcc-8004.2898.1 0.83 +4.2
2,822,431 - Xcc-8004.2898.1 0.83 +4.4
2,822,484 + Xcc-8004.2898.1 0.85 +4.7
2,822,484 + Xcc-8004.2898.1 0.85 +3.6
2,822,484 + Xcc-8004.2898.1 0.85 +2.1
2,822,484 + Xcc-8004.2898.1 0.85 +4.7
2,822,485 - Xcc-8004.2898.1 0.85 +3.9
2,822,485 - Xcc-8004.2898.1 0.85 +3.7
2,822,538 + Xcc-8004.2898.1 0.88 +3.5
2,822,538 + Xcc-8004.2898.1 0.88 +5.7
2,822,538 + Xcc-8004.2898.1 0.88 +3.6
2,822,538 + Xcc-8004.2898.1 0.88 +5.2
2,822,539 - Xcc-8004.2898.1 0.88 +5.4
2,822,663 - +3.9
2,822,698 - +2.2
2,822,698 - +3.5
2,822,803 + +0.7
2,822,804 - +2.2
2,822,804 - -2.5
2,822,870 + -1.0
2,822,870 + -0.9
2,822,871 - +0.8
2,822,919 - Xcc-8004.2899.1 0.18 -2.0
2,822,933 + Xcc-8004.2899.1 0.20 +1.5
2,822,933 + Xcc-8004.2899.1 0.20 +1.0
2,822,933 + Xcc-8004.2899.1 0.20 +1.6
2,822,933 + Xcc-8004.2899.1 0.20 +1.2
2,822,934 - Xcc-8004.2899.1 0.20 -1.5
2,822,934 - Xcc-8004.2899.1 0.20 -0.4
2,822,934 - Xcc-8004.2899.1 0.20 +1.1
2,822,934 - Xcc-8004.2899.1 0.20 -0.8
2,822,934 - Xcc-8004.2899.1 0.20 -0.6
2,822,992 + Xcc-8004.2899.1 0.29 +0.7
2,822,992 + Xcc-8004.2899.1 0.29 +0.5
2,822,992 + Xcc-8004.2899.1 0.29 +0.2
2,822,993 - Xcc-8004.2899.1 0.30 +0.6
2,822,993 - Xcc-8004.2899.1 0.30 +0.6
2,823,000 - Xcc-8004.2899.1 0.31 -0.2
2,823,000 - Xcc-8004.2899.1 0.31 +0.9
2,823,000 - Xcc-8004.2899.1 0.31 -1.9
2,823,000 - Xcc-8004.2899.1 0.31 -1.5
2,823,047 + Xcc-8004.2899.1 0.38 -1.5
2,823,048 - Xcc-8004.2899.1 0.39 +0.9
2,823,109 + Xcc-8004.2899.1 0.48 +1.2
2,823,109 + Xcc-8004.2899.1 0.48 +0.3
2,823,109 + Xcc-8004.2899.1 0.48 +0.4
2,823,109 + Xcc-8004.2899.1 0.48 -1.5
2,823,110 - Xcc-8004.2899.1 0.49 -0.3
2,823,110 - Xcc-8004.2899.1 0.49 +3.4
2,823,110 - Xcc-8004.2899.1 0.49 +0.7
2,823,110 - Xcc-8004.2899.1 0.49 -0.2
2,823,111 + Xcc-8004.2899.1 0.49 -3.4
2,823,111 + Xcc-8004.2899.1 0.49 +0.3
2,823,112 - Xcc-8004.2899.1 0.49 +0.7
2,823,112 - Xcc-8004.2899.1 0.49 +0.5
2,823,112 - Xcc-8004.2899.1 0.49 +1.2
2,823,112 - Xcc-8004.2899.1 0.49 +0.4
2,823,112 - Xcc-8004.2899.1 0.49 +0.2
2,823,112 - Xcc-8004.2899.1 0.49 +1.5
2,823,163 + Xcc-8004.2899.1 0.57 +0.5
2,823,163 + Xcc-8004.2899.1 0.57 -1.8
2,823,163 + Xcc-8004.2899.1 0.57 -0.6
2,823,163 + Xcc-8004.2899.1 0.57 +1.3
2,823,164 - Xcc-8004.2899.1 0.57 +0.4
2,823,328 + Xcc-8004.2899.1 0.84 +1.5
2,823,328 + Xcc-8004.2899.1 0.84 +1.3
2,823,328 + Xcc-8004.2899.1 0.84 -0.0
2,823,360 + Xcc-8004.2899.1 0.89 +2.2
2,823,360 + Xcc-8004.2899.1 0.89 -0.2
2,823,361 - Xcc-8004.2899.1 0.89 +0.6
2,823,554 + Xcc-8004.2900.1 0.10 +5.6
2,823,554 + Xcc-8004.2900.1 0.10 +5.0
2,823,555 - Xcc-8004.2900.1 0.10 +2.9
2,823,555 - Xcc-8004.2900.1 0.10 +4.7
2,823,555 - Xcc-8004.2900.1 0.10 +4.4
2,823,555 - Xcc-8004.2900.1 0.10 +4.5
2,823,561 - Xcc-8004.2900.1 0.11 +7.1
2,823,561 - Xcc-8004.2900.1 0.11 +3.6
2,823,565 + Xcc-8004.2900.1 0.11 +9.2
2,823,565 + Xcc-8004.2900.1 0.11 +6.7
2,823,566 - Xcc-8004.2900.1 0.11 +4.1
2,823,596 + Xcc-8004.2900.1 0.14 +2.7
2,823,596 + Xcc-8004.2900.1 0.14 +3.2
2,823,596 + Xcc-8004.2900.1 0.14 +5.9
2,823,596 + Xcc-8004.2900.1 0.14 +3.2
2,823,597 - Xcc-8004.2900.1 0.14 +5.6
2,823,597 - Xcc-8004.2900.1 0.14 +4.9
2,823,597 - Xcc-8004.2900.1 0.14 +4.9
2,823,597 - Xcc-8004.2900.1 0.14 +4.8
2,823,779 + Xcc-8004.2900.1 0.30 +3.2

Or see this region's nucleotide sequence