Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2872.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2871.1 and Xcc-8004.2872.1 are separated by 4 nucleotidesXcc-8004.2872.1 and Xcc-8004.2873.1 overlap by 4 nucleotides Xcc-8004.2871.1: Xcc-8004.2871.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,788,151 to 2,790,397 Xcc-8004.2871.1 Xcc-8004.2872.1: Xcc-8004.2872.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,790,402 to 2,791,247 Xcc-8004.2872.1 Xcc-8004.2873.1: Xcc-8004.2873.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,791,244 to 2,792,959 Xcc-8004.2873.1 Position (kb) 2790 2791 2792Strain fitness (log2 ratio) -2 -1 0 1 2at 2789.737 kb on + strand, within Xcc-8004.2871.1at 2789.738 kb on - strand, within Xcc-8004.2871.1at 2790.248 kb on + strandat 2790.248 kb on + strandat 2790.249 kb on - strandat 2790.466 kb on + strandat 2790.466 kb on + strandat 2790.466 kb on + strandat 2790.466 kb on + strandat 2790.467 kb on - strandat 2790.473 kb on - strandat 2790.633 kb on + strand, within Xcc-8004.2872.1at 2790.633 kb on + strand, within Xcc-8004.2872.1at 2790.633 kb on + strand, within Xcc-8004.2872.1at 2790.633 kb on + strand, within Xcc-8004.2872.1at 2790.634 kb on - strand, within Xcc-8004.2872.1at 2790.634 kb on - strand, within Xcc-8004.2872.1at 2790.634 kb on - strand, within Xcc-8004.2872.1at 2790.634 kb on - strand, within Xcc-8004.2872.1at 2790.634 kb on - strand, within Xcc-8004.2872.1at 2790.634 kb on - strand, within Xcc-8004.2872.1at 2790.634 kb on - strand, within Xcc-8004.2872.1at 2790.635 kb on + strand, within Xcc-8004.2872.1at 2790.687 kb on + strand, within Xcc-8004.2872.1at 2790.687 kb on + strand, within Xcc-8004.2872.1at 2790.687 kb on + strand, within Xcc-8004.2872.1at 2790.687 kb on + strand, within Xcc-8004.2872.1at 2790.688 kb on - strand, within Xcc-8004.2872.1at 2790.688 kb on - strand, within Xcc-8004.2872.1at 2790.813 kb on - strand, within Xcc-8004.2872.1at 2790.901 kb on - strand, within Xcc-8004.2872.1at 2790.966 kb on + strand, within Xcc-8004.2872.1at 2790.975 kb on + strand, within Xcc-8004.2872.1at 2790.975 kb on + strand, within Xcc-8004.2872.1at 2790.975 kb on + strand, within Xcc-8004.2872.1at 2790.976 kb on - strand, within Xcc-8004.2872.1at 2790.976 kb on - strand, within Xcc-8004.2872.1at 2790.976 kb on - strand, within Xcc-8004.2872.1at 2790.976 kb on - strand, within Xcc-8004.2872.1at 2790.976 kb on - strand, within Xcc-8004.2872.1at 2790.987 kb on + strand, within Xcc-8004.2872.1at 2791.014 kb on + strand, within Xcc-8004.2872.1at 2791.014 kb on + strand, within Xcc-8004.2872.1at 2791.014 kb on + strand, within Xcc-8004.2872.1at 2791.015 kb on - strand, within Xcc-8004.2872.1at 2791.015 kb on - strand, within Xcc-8004.2872.1at 2791.460 kb on + strand, within Xcc-8004.2873.1at 2791.461 kb on - strand, within Xcc-8004.2873.1at 2791.673 kb on + strand, within Xcc-8004.2873.1at 2791.673 kb on + strand, within Xcc-8004.2873.1at 2791.674 kb on - strand, within Xcc-8004.2873.1at 2791.751 kb on - strand, within Xcc-8004.2873.1at 2791.791 kb on - strand, within Xcc-8004.2873.1at 2791.816 kb on + strand, within Xcc-8004.2873.1at 2791.869 kb on + strand, within Xcc-8004.2873.1at 2791.869 kb on + strand, within Xcc-8004.2873.1at 2791.870 kb on - strand, within Xcc-8004.2873.1at 2791.870 kb on - strand, within Xcc-8004.2873.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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2,789,737 + Xcc-8004.2871.1 0.71 -0.6
2,789,738 - Xcc-8004.2871.1 0.71 -2.5
2,790,248 + -1.3
2,790,248 + -0.2
2,790,249 - -0.0
2,790,466 + +2.4
2,790,466 + -2.1
2,790,466 + +0.1
2,790,466 + -1.1
2,790,467 - +0.8
2,790,473 - +2.2
2,790,633 + Xcc-8004.2872.1 0.27 -0.2
2,790,633 + Xcc-8004.2872.1 0.27 -0.8
2,790,633 + Xcc-8004.2872.1 0.27 -0.2
2,790,633 + Xcc-8004.2872.1 0.27 -0.0
2,790,634 - Xcc-8004.2872.1 0.27 +0.4
2,790,634 - Xcc-8004.2872.1 0.27 +0.5
2,790,634 - Xcc-8004.2872.1 0.27 -0.4
2,790,634 - Xcc-8004.2872.1 0.27 +0.4
2,790,634 - Xcc-8004.2872.1 0.27 +0.5
2,790,634 - Xcc-8004.2872.1 0.27 +0.3
2,790,634 - Xcc-8004.2872.1 0.27 +0.8
2,790,635 + Xcc-8004.2872.1 0.28 -0.5
2,790,687 + Xcc-8004.2872.1 0.34 -1.0
2,790,687 + Xcc-8004.2872.1 0.34 -0.1
2,790,687 + Xcc-8004.2872.1 0.34 +0.9
2,790,687 + Xcc-8004.2872.1 0.34 -0.7
2,790,688 - Xcc-8004.2872.1 0.34 -0.5
2,790,688 - Xcc-8004.2872.1 0.34 -1.6
2,790,813 - Xcc-8004.2872.1 0.49 -0.6
2,790,901 - Xcc-8004.2872.1 0.59 +1.8
2,790,966 + Xcc-8004.2872.1 0.67 +0.2
2,790,975 + Xcc-8004.2872.1 0.68 -0.7
2,790,975 + Xcc-8004.2872.1 0.68 -0.7
2,790,975 + Xcc-8004.2872.1 0.68 -0.9
2,790,976 - Xcc-8004.2872.1 0.68 -0.5
2,790,976 - Xcc-8004.2872.1 0.68 +2.6
2,790,976 - Xcc-8004.2872.1 0.68 -1.1
2,790,976 - Xcc-8004.2872.1 0.68 +0.0
2,790,976 - Xcc-8004.2872.1 0.68 -0.8
2,790,987 + Xcc-8004.2872.1 0.69 -1.3
2,791,014 + Xcc-8004.2872.1 0.72 -1.3
2,791,014 + Xcc-8004.2872.1 0.72 +1.6
2,791,014 + Xcc-8004.2872.1 0.72 -1.6
2,791,015 - Xcc-8004.2872.1 0.72 -0.2
2,791,015 - Xcc-8004.2872.1 0.72 -2.5
2,791,460 + Xcc-8004.2873.1 0.13 +0.8
2,791,461 - Xcc-8004.2873.1 0.13 -0.0
2,791,673 + Xcc-8004.2873.1 0.25 +0.1
2,791,673 + Xcc-8004.2873.1 0.25 +1.4
2,791,674 - Xcc-8004.2873.1 0.25 -2.6
2,791,751 - Xcc-8004.2873.1 0.30 +1.5
2,791,791 - Xcc-8004.2873.1 0.32 +0.2
2,791,816 + Xcc-8004.2873.1 0.33 -1.6
2,791,869 + Xcc-8004.2873.1 0.36 +0.1
2,791,869 + Xcc-8004.2873.1 0.36 +1.0
2,791,870 - Xcc-8004.2873.1 0.36 +1.0
2,791,870 - Xcc-8004.2873.1 0.36 -0.1

Or see this region's nucleotide sequence