Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2808.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 2 6 dpi (25 plantes)
2,720,293	-		Xcc-8004.2806.1	0.85	-0.0
2,720,468	+		Xcc-8004.2806.1	0.90	-2.9
2,720,468	+		Xcc-8004.2806.1	0.90	-0.5
2,720,468	+		Xcc-8004.2806.1	0.90	+1.0
2,720,468	+		Xcc-8004.2806.1	0.90	+1.2
2,720,468	+		Xcc-8004.2806.1	0.90	-0.2
2,720,468	+		Xcc-8004.2806.1	0.90	+0.3
2,720,468	+		Xcc-8004.2806.1	0.90	-0.9
2,720,468	+		Xcc-8004.2806.1	0.90	-1.7
2,720,468	+		Xcc-8004.2806.1	0.90	+0.9
2,720,468	+		Xcc-8004.2806.1	0.90	+1.0
2,720,468	+		Xcc-8004.2806.1	0.90	+1.2
2,720,469	-		Xcc-8004.2806.1	0.90	+1.6
2,720,469	-		Xcc-8004.2806.1	0.90	+0.1
2,720,469	-		Xcc-8004.2806.1	0.90	+0.8
2,720,469	-		Xcc-8004.2806.1	0.90	+2.4
2,720,469	-		Xcc-8004.2806.1	0.90	-1.5
2,720,469	-		Xcc-8004.2806.1	0.90	-0.2
2,720,469	-		Xcc-8004.2806.1	0.90	+0.5
2,720,469	-		Xcc-8004.2806.1	0.90	-1.4
2,720,469	-		Xcc-8004.2806.1	0.90	-2.3
2,720,469	-		Xcc-8004.2806.1	0.90	-1.1
2,720,469	-		Xcc-8004.2806.1	0.90	-0.3
2,720,469	-		Xcc-8004.2806.1	0.90	-1.6
2,720,469	-		Xcc-8004.2806.1	0.90	-1.9
2,720,469	-		Xcc-8004.2806.1	0.90	-2.4
2,720,469	-		Xcc-8004.2806.1	0.90	+0.2
2,720,469	-		Xcc-8004.2806.1	0.90	-1.6
2,720,497	+				-2.9
2,720,497	+				-0.1
2,720,500	-				+1.8
2,720,507	+				-1.2
2,720,508	-				+0.8
2,720,508	-				-0.7
2,720,508	-				-2.7
2,720,606	+				+1.5
2,720,606	+				-0.4
2,720,606	+				-1.2
2,720,606	+				-0.7
2,720,607	-				+1.6
2,720,607	-				+2.9
2,720,607	-				-0.8
2,720,607	-				-1.1
2,720,607	-				-0.1
2,720,607	-				-2.7
2,720,607	-				+0.8
2,720,607	-				+0.3
2,720,607	-				+1.7
2,720,607	-				-0.6
2,720,631	+				-0.8
2,720,631	+				-1.5
2,720,631	+				-0.3
2,720,631	+				-3.0
2,720,631	+				+0.4
2,720,631	+				-2.3
2,720,631	+				-0.9
2,720,631	+				+2.4
2,720,631	+				-2.3
2,720,631	+				+0.6
2,720,632	-				+0.9
2,720,632	-				+0.8
2,720,632	-				+0.1
2,720,632	-				+0.9
2,720,632	-				+1.3
2,720,632	-				-0.6
2,720,632	-				-1.4
2,720,632	-				+0.3
2,720,632	-				+0.5
2,720,632	-				-0.7
2,720,632	-				-1.8
2,720,632	-				-0.1
2,720,651	+				-1.1
2,720,652	-				-0.4
2,720,722	+				+0.1
2,720,722	+				+0.9
2,720,722	+				-0.3
2,720,722	+				+0.9
2,720,723	-				-1.4
2,720,723	-				+0.5
2,720,723	-				+0.2
2,720,723	-				-0.8
2,720,723	-				+0.5
2,720,723	-				-1.7
2,720,723	-				-0.7
2,720,723	-				-0.4
2,720,723	-				-0.2
2,720,723	-				-1.0
2,720,723	-				+2.2
2,720,775	+				+0.3
2,720,775	+				-0.7
2,720,775	+				+0.4
2,720,775	+				-0.3
2,720,775	+				+1.9
2,720,775	+				-0.0
2,720,775	+				+2.5
2,720,776	-				-1.2
2,720,776	-				-0.1
2,720,776	-				-0.5
2,720,776	-				-1.4
2,720,776	-				-0.5
2,720,776	-				-1.5
2,720,971	+				-0.3
2,720,971	+				+0.7
2,720,972	-				-0.1
2,720,972	-				-0.2
2,721,160	+				-0.6
2,721,161	-				-1.0
2,721,161	-				+0.3
2,721,161	-				+0.6
2,721,161	-				+1.0
2,721,161	-				-1.7
2,721,161	-				-0.3
2,721,188	+		Xcc-8004.2808.1	0.11	+7.3
2,721,188	+		Xcc-8004.2808.1	0.11	-1.8
2,721,188	+		Xcc-8004.2808.1	0.11	-1.0
2,721,188	+		Xcc-8004.2808.1	0.11	+0.4
2,721,188	+		Xcc-8004.2808.1	0.11	+0.1
2,721,188	+		Xcc-8004.2808.1	0.11	+0.6
2,721,188	+		Xcc-8004.2808.1	0.11	+0.8
2,721,189	-		Xcc-8004.2808.1	0.12	-1.8
2,721,189	-		Xcc-8004.2808.1	0.12	+0.6
2,721,189	-		Xcc-8004.2808.1	0.12	-1.2
2,721,189	-		Xcc-8004.2808.1	0.12	+0.6
2,721,488	+				-1.9
2,721,488	+				+0.5
2,721,488	+				+0.5
2,721,488	+				-1.0
2,721,488	+				+0.9
2,721,488	+				-0.4
2,721,489	-				-0.6
2,721,489	-				-0.5
2,721,489	-				-0.1
2,721,489	-				+0.9
2,721,515	+				+1.1
2,721,515	+				-3.2
2,721,515	+				-0.6
2,721,515	+				-1.0
2,721,516	-				+0.4
2,721,516	-				-1.1
2,721,516	-				+0.5
2,721,516	-				-0.2
2,721,516	-				+0.1
2,721,702	+				-0.1
2,721,703	-				+0.7
2,721,714	+		Xcc-8004.2809.1	0.11	+0.1
2,721,714	+		Xcc-8004.2809.1	0.11	-0.8
2,721,714	+		Xcc-8004.2809.1	0.11	+0.2
2,721,714	+		Xcc-8004.2809.1	0.11	+1.1
2,721,714	+		Xcc-8004.2809.1	0.11	-0.3
2,721,714	+		Xcc-8004.2809.1	0.11	-0.7
2,721,715	-		Xcc-8004.2809.1	0.11	+0.7
2,721,715	-		Xcc-8004.2809.1	0.11	-0.9
2,721,715	-		Xcc-8004.2809.1	0.11	-0.4
2,721,715	-		Xcc-8004.2809.1	0.11	-0.9
2,721,715	-		Xcc-8004.2809.1	0.11	-1.0
2,721,715	-		Xcc-8004.2809.1	0.11	-1.0
2,721,716	+		Xcc-8004.2809.1	0.11	-0.0
2,721,732	-		Xcc-8004.2809.1	0.12	+0.3
2,721,831	+		Xcc-8004.2809.1	0.17	-0.7
2,721,831	+		Xcc-8004.2809.1	0.17	+1.7
2,721,831	+		Xcc-8004.2809.1	0.17	+0.9
2,721,832	-		Xcc-8004.2809.1	0.17	+1.0
2,721,832	-		Xcc-8004.2809.1	0.17	-1.9
2,721,832	-		Xcc-8004.2809.1	0.17	-1.2
2,721,832	-		Xcc-8004.2809.1	0.17	-1.8
2,721,832	-		Xcc-8004.2809.1	0.17	-0.2
2,721,832	-		Xcc-8004.2809.1	0.17	-1.9
2,721,832	-		Xcc-8004.2809.1	0.17	-0.7
2,721,832	-		Xcc-8004.2809.1	0.17	-0.1
2,721,832	-		Xcc-8004.2809.1	0.17	+1.3
2,721,951	+		Xcc-8004.2809.1	0.24	+2.4
2,721,951	+		Xcc-8004.2809.1	0.24	+1.2
2,721,992	+		Xcc-8004.2809.1	0.27	-2.8
2,721,992	+		Xcc-8004.2809.1	0.27	-0.2
2,721,993	-		Xcc-8004.2809.1	0.27	+0.6
2,721,993	-		Xcc-8004.2809.1	0.27	+0.9
2,722,121	+		Xcc-8004.2809.1	0.34	+0.4
2,722,122	-		Xcc-8004.2809.1	0.34	-0.1
2,722,293	+		Xcc-8004.2809.1	0.44	+0.3
2,722,293	+		Xcc-8004.2809.1	0.44	-0.5
2,722,293	+		Xcc-8004.2809.1	0.44	+0.0
2,722,293	+		Xcc-8004.2809.1	0.44	+1.2
2,722,293	+		Xcc-8004.2809.1	0.44	+0.5
2,722,293	+		Xcc-8004.2809.1	0.44	+0.8
2,722,293	+		Xcc-8004.2809.1	0.44	-3.3
2,722,293	+		Xcc-8004.2809.1	0.44	-0.1
2,722,293	+		Xcc-8004.2809.1	0.44	-1.2
2,722,294	-		Xcc-8004.2809.1	0.44	+0.9
2,722,294	-		Xcc-8004.2809.1	0.44	-0.7
2,722,294	-		Xcc-8004.2809.1	0.44	+0.4
2,722,294	-		Xcc-8004.2809.1	0.44	+0.2
2,722,294	-		Xcc-8004.2809.1	0.44	-0.9
2,722,294	-		Xcc-8004.2809.1	0.44	-0.8
2,722,294	-		Xcc-8004.2809.1	0.44	-0.5
2,722,294	-		Xcc-8004.2809.1	0.44	-0.1
2,722,294	-		Xcc-8004.2809.1	0.44	-0.1
2,722,404	+		Xcc-8004.2809.1	0.51	-0.2
2,722,404	+		Xcc-8004.2809.1	0.51	-0.3
2,722,404	+		Xcc-8004.2809.1	0.51	+0.1
2,722,404	+		Xcc-8004.2809.1	0.51	-0.9
2,722,404	+		Xcc-8004.2809.1	0.51	+0.9
2,722,404	+		Xcc-8004.2809.1	0.51	-1.3
2,722,404	+		Xcc-8004.2809.1	0.51	-0.8
2,722,404	+		Xcc-8004.2809.1	0.51	+0.2
2,722,405	-		Xcc-8004.2809.1	0.51	+0.1
2,722,405	-		Xcc-8004.2809.1	0.51	-0.6
2,722,405	-		Xcc-8004.2809.1	0.51	+0.4
2,722,405	-		Xcc-8004.2809.1	0.51	-0.7
2,722,405	-		Xcc-8004.2809.1	0.51	-0.8
2,722,405	-		Xcc-8004.2809.1	0.51	+1.0
2,722,405	-		Xcc-8004.2809.1	0.51	-0.1
2,722,405	-		Xcc-8004.2809.1	0.51	+0.8
2,722,405	-		Xcc-8004.2809.1	0.51	-1.0
2,722,405	-		Xcc-8004.2809.1	0.51	+0.5
2,722,405	-		Xcc-8004.2809.1	0.51	-0.6
2,722,405	-		Xcc-8004.2809.1	0.51	-0.3
2,722,405	-		Xcc-8004.2809.1	0.51	-0.5