Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.233.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.231.1 and Xcc-8004.232.1 are separated by 15 nucleotidesXcc-8004.232.1 and Xcc-8004.233.1 are separated by 3 nucleotidesXcc-8004.233.1 and Xcc-8004.234.1 overlap by 4 nucleotides Xcc-8004.231.1: Xcc-8004.231.1 - partition protein, at 228,973 to 229,605 Xcc-8004.231.1 Xcc-8004.232.1: Xcc-8004.232.1 - Phosphohistidine phosphatase SixA, at 229,621 to 230,097 Xcc-8004.232.1 Xcc-8004.233.1: Xcc-8004.233.1 - FIG01211637: hypothetical protein, at 230,101 to 230,673 Xcc-8004.233.1 Xcc-8004.234.1: Xcc-8004.234.1 - cardiolipin synthase, at 230,670 to 232,652 Xcc-8004.234.1 Position (kb) 230 231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 229.459 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.495 kb on + strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.496 kb on - strand, within Xcc-8004.231.1at 229.603 kb on + strandat 229.603 kb on + strandat 229.603 kb on + strandat 229.603 kb on + strandat 229.603 kb on + strandat 229.603 kb on + strandat 229.604 kb on - strandat 229.604 kb on - strandat 229.620 kb on + strandat 229.620 kb on + strandat 229.620 kb on + strandat 229.621 kb on - strandat 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.996 kb on + strand, within Xcc-8004.232.1at 229.996 kb on + strand, within Xcc-8004.232.1at 229.996 kb on + strand, within Xcc-8004.232.1at 229.997 kb on - strand, within Xcc-8004.232.1at 230.353 kb on + strand, within Xcc-8004.233.1at 230.353 kb on + strand, within Xcc-8004.233.1at 230.353 kb on + strand, within Xcc-8004.233.1at 230.354 kb on - strand, within Xcc-8004.233.1at 230.354 kb on - strand, within Xcc-8004.233.1at 230.354 kb on - strand, within Xcc-8004.233.1at 230.398 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.543 kb on - strand, within Xcc-8004.233.1at 230.568 kb on + strand, within Xcc-8004.233.1at 230.568 kb on + strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.982 kb on + strand, within Xcc-8004.234.1at 230.982 kb on + strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.184 kb on - strand, within Xcc-8004.234.1at 231.184 kb on - strand, within Xcc-8004.234.1at 231.294 kb on + strand, within Xcc-8004.234.1at 231.295 kb on - strand, within Xcc-8004.234.1at 231.295 kb on - strand, within Xcc-8004.234.1at 231.295 kb on - strand, within Xcc-8004.234.1at 231.306 kb on + strand, within Xcc-8004.234.1at 231.307 kb on - strand, within Xcc-8004.234.1at 231.328 kb on - strand, within Xcc-8004.234.1at 231.586 kb on + strand, within Xcc-8004.234.1at 231.586 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.601 kb on - strand, within Xcc-8004.234.1at 231.601 kb on - strand, within Xcc-8004.234.1at 231.601 kb on - strand, within Xcc-8004.234.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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229,459 + Xcc-8004.231.1 0.77 -0.5
229,495 + Xcc-8004.231.1 0.82 -2.3
229,495 + Xcc-8004.231.1 0.82 +0.1
229,495 + Xcc-8004.231.1 0.82 +1.2
229,495 + Xcc-8004.231.1 0.82 +1.1
229,495 + Xcc-8004.231.1 0.82 +0.3
229,495 + Xcc-8004.231.1 0.82 +0.7
229,495 + Xcc-8004.231.1 0.82 -1.0
229,495 + Xcc-8004.231.1 0.82 -4.2
229,495 + Xcc-8004.231.1 0.82 +1.1
229,495 + Xcc-8004.231.1 0.82 +1.5
229,495 + Xcc-8004.231.1 0.82 -0.4
229,495 + Xcc-8004.231.1 0.82 +0.6
229,495 + Xcc-8004.231.1 0.82 -2.6
229,495 + Xcc-8004.231.1 0.82 -0.7
229,495 + Xcc-8004.231.1 0.82 -1.0
229,495 + Xcc-8004.231.1 0.82 +1.7
229,495 + Xcc-8004.231.1 0.82 +0.3
229,495 + Xcc-8004.231.1 0.82 -1.1
229,495 + Xcc-8004.231.1 0.82 -0.1
229,496 - Xcc-8004.231.1 0.83 -1.2
229,496 - Xcc-8004.231.1 0.83 -0.4
229,496 - Xcc-8004.231.1 0.83 -0.0
229,496 - Xcc-8004.231.1 0.83 -1.6
229,496 - Xcc-8004.231.1 0.83 +0.7
229,496 - Xcc-8004.231.1 0.83 -2.4
229,496 - Xcc-8004.231.1 0.83 +1.6
229,496 - Xcc-8004.231.1 0.83 +0.3
229,496 - Xcc-8004.231.1 0.83 -1.9
229,496 - Xcc-8004.231.1 0.83 -0.9
229,496 - Xcc-8004.231.1 0.83 -0.6
229,496 - Xcc-8004.231.1 0.83 +2.0
229,496 - Xcc-8004.231.1 0.83 -0.1
229,496 - Xcc-8004.231.1 0.83 -2.0
229,496 - Xcc-8004.231.1 0.83 -1.3
229,496 - Xcc-8004.231.1 0.83 -0.3
229,496 - Xcc-8004.231.1 0.83 -1.5
229,603 + -0.9
229,603 + +1.0
229,603 + -0.3
229,603 + -0.5
229,603 + +1.3
229,603 + -0.4
229,604 - -0.7
229,604 - -1.2
229,620 + +1.1
229,620 + -2.5
229,620 + -0.3
229,621 - +0.1
229,864 + Xcc-8004.232.1 0.51 +0.7
229,864 + Xcc-8004.232.1 0.51 -0.2
229,864 + Xcc-8004.232.1 0.51 +0.2
229,864 + Xcc-8004.232.1 0.51 +0.7
229,864 + Xcc-8004.232.1 0.51 +0.6
229,864 + Xcc-8004.232.1 0.51 -0.7
229,865 - Xcc-8004.232.1 0.51 -2.2
229,865 - Xcc-8004.232.1 0.51 -2.3
229,865 - Xcc-8004.232.1 0.51 +0.3
229,865 - Xcc-8004.232.1 0.51 -0.7
229,865 - Xcc-8004.232.1 0.51 -0.9
229,865 - Xcc-8004.232.1 0.51 -1.7
229,865 - Xcc-8004.232.1 0.51 -0.6
229,865 - Xcc-8004.232.1 0.51 +0.2
229,865 - Xcc-8004.232.1 0.51 -1.2
229,865 - Xcc-8004.232.1 0.51 +1.7
229,865 - Xcc-8004.232.1 0.51 +0.6
229,996 + Xcc-8004.232.1 0.79 -0.4
229,996 + Xcc-8004.232.1 0.79 -1.3
229,996 + Xcc-8004.232.1 0.79 +0.0
229,997 - Xcc-8004.232.1 0.79 -2.2
230,353 + Xcc-8004.233.1 0.44 -0.0
230,353 + Xcc-8004.233.1 0.44 -0.0
230,353 + Xcc-8004.233.1 0.44 -1.1
230,354 - Xcc-8004.233.1 0.44 -0.5
230,354 - Xcc-8004.233.1 0.44 +0.7
230,354 - Xcc-8004.233.1 0.44 +1.2
230,398 + Xcc-8004.233.1 0.52 +1.8
230,542 + Xcc-8004.233.1 0.77 +0.2
230,542 + Xcc-8004.233.1 0.77 -2.4
230,542 + Xcc-8004.233.1 0.77 -0.5
230,542 + Xcc-8004.233.1 0.77 -0.1
230,543 - Xcc-8004.233.1 0.77 -2.6
230,568 + Xcc-8004.233.1 0.82 +1.1
230,568 + Xcc-8004.233.1 0.82 +1.5
230,569 - Xcc-8004.233.1 0.82 +1.9
230,569 - Xcc-8004.233.1 0.82 +0.0
230,569 - Xcc-8004.233.1 0.82 -0.2
230,569 - Xcc-8004.233.1 0.82 +1.3
230,569 - Xcc-8004.233.1 0.82 -0.9
230,569 - Xcc-8004.233.1 0.82 -0.2
230,569 - Xcc-8004.233.1 0.82 +1.3
230,982 + Xcc-8004.234.1 0.16 -0.6
230,982 + Xcc-8004.234.1 0.16 -0.5
230,983 - Xcc-8004.234.1 0.16 +1.8
230,983 - Xcc-8004.234.1 0.16 -3.9
230,983 - Xcc-8004.234.1 0.16 +0.1
230,983 - Xcc-8004.234.1 0.16 -1.6
230,983 - Xcc-8004.234.1 0.16 -1.6
230,983 - Xcc-8004.234.1 0.16 -1.4
230,983 - Xcc-8004.234.1 0.16 -1.0
231,150 + Xcc-8004.234.1 0.24 -0.3
231,150 + Xcc-8004.234.1 0.24 +0.4
231,150 + Xcc-8004.234.1 0.24 +1.3
231,150 + Xcc-8004.234.1 0.24 +0.3
231,150 + Xcc-8004.234.1 0.24 +1.3
231,150 + Xcc-8004.234.1 0.24 +0.3
231,150 + Xcc-8004.234.1 0.24 +0.4
231,150 + Xcc-8004.234.1 0.24 -0.3
231,150 + Xcc-8004.234.1 0.24 -0.0
231,150 + Xcc-8004.234.1 0.24 -0.5
231,151 - Xcc-8004.234.1 0.24 +2.2
231,151 - Xcc-8004.234.1 0.24 +1.5
231,151 - Xcc-8004.234.1 0.24 -0.2
231,151 - Xcc-8004.234.1 0.24 -2.3
231,151 - Xcc-8004.234.1 0.24 -1.9
231,151 - Xcc-8004.234.1 0.24 -2.9
231,151 - Xcc-8004.234.1 0.24 -1.2
231,183 + Xcc-8004.234.1 0.26 -2.2
231,183 + Xcc-8004.234.1 0.26 +0.0
231,183 + Xcc-8004.234.1 0.26 +0.7
231,183 + Xcc-8004.234.1 0.26 -0.5
231,183 + Xcc-8004.234.1 0.26 +0.8
231,183 + Xcc-8004.234.1 0.26 +0.5
231,184 - Xcc-8004.234.1 0.26 -1.9
231,184 - Xcc-8004.234.1 0.26 +0.0
231,294 + Xcc-8004.234.1 0.31 +0.8
231,295 - Xcc-8004.234.1 0.32 -3.1
231,295 - Xcc-8004.234.1 0.32 +1.8
231,295 - Xcc-8004.234.1 0.32 -0.0
231,306 + Xcc-8004.234.1 0.32 +1.8
231,307 - Xcc-8004.234.1 0.32 +0.8
231,328 - Xcc-8004.234.1 0.33 +1.5
231,586 + Xcc-8004.234.1 0.46 -0.6
231,586 + Xcc-8004.234.1 0.46 -1.3
231,600 + Xcc-8004.234.1 0.47 -1.7
231,600 + Xcc-8004.234.1 0.47 -0.4
231,600 + Xcc-8004.234.1 0.47 -0.8
231,600 + Xcc-8004.234.1 0.47 -0.3
231,600 + Xcc-8004.234.1 0.47 -0.5
231,600 + Xcc-8004.234.1 0.47 -0.3
231,600 + Xcc-8004.234.1 0.47 -0.2
231,600 + Xcc-8004.234.1 0.47 +0.5
231,601 - Xcc-8004.234.1 0.47 +0.3
231,601 - Xcc-8004.234.1 0.47 -2.6
231,601 - Xcc-8004.234.1 0.47 +0.2

Or see this region's nucleotide sequence