Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1834.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1831.1 and Xcc-8004.1832.1 are separated by 65 nucleotidesXcc-8004.1832.1 and Xcc-8004.1833.1 are separated by 112 nucleotidesXcc-8004.1833.1 and Xcc-8004.1834.1 are separated by 25 nucleotidesXcc-8004.1834.1 and Xcc-8004.1835.1 are separated by 111 nucleotides Xcc-8004.1831.1: Xcc-8004.1831.1 - FIG01211728: hypothetical protein, at 1,767,564 to 1,768,769 Xcc-8004.1831.1 Xcc-8004.1832.1: Xcc-8004.1832.1 - FIG01210449: hypothetical protein, at 1,768,835 to 1,769,080 Xcc-8004.1832.1 Xcc-8004.1833.1: Xcc-8004.1833.1 - FIG01210022: hypothetical protein, at 1,769,193 to 1,769,738 Xcc-8004.1833.1 Xcc-8004.1834.1: Xcc-8004.1834.1 - Inner membrane protein, at 1,769,764 to 1,770,165 Xcc-8004.1834.1 Xcc-8004.1835.1: Xcc-8004.1835.1 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 1,770,277 to 1,771,455 Xcc-8004.1835.1 Position (kb) 1769 1770 1771Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1768.799 kb on + strandat 1768.799 kb on + strandat 1768.800 kb on - strandat 1768.868 kb on + strand, within Xcc-8004.1832.1at 1768.868 kb on + strand, within Xcc-8004.1832.1at 1768.868 kb on + strand, within Xcc-8004.1832.1at 1768.868 kb on + strand, within Xcc-8004.1832.1at 1768.869 kb on - strand, within Xcc-8004.1832.1at 1768.869 kb on - strand, within Xcc-8004.1832.1at 1768.869 kb on - strand, within Xcc-8004.1832.1at 1769.123 kb on + strandat 1769.123 kb on + strandat 1769.124 kb on - strandat 1769.177 kb on + strandat 1769.177 kb on + strandat 1769.177 kb on + strandat 1769.177 kb on + strandat 1769.177 kb on + strandat 1769.177 kb on + strandat 1769.178 kb on - strandat 1769.178 kb on - strandat 1769.178 kb on - strandat 1769.178 kb on - strandat 1769.178 kb on - strandat 1769.574 kb on + strand, within Xcc-8004.1833.1at 1769.574 kb on + strand, within Xcc-8004.1833.1at 1769.574 kb on + strand, within Xcc-8004.1833.1at 1769.574 kb on + strand, within Xcc-8004.1833.1at 1769.575 kb on - strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.607 kb on + strand, within Xcc-8004.1833.1at 1769.608 kb on - strand, within Xcc-8004.1833.1at 1769.608 kb on - strand, within Xcc-8004.1833.1at 1769.608 kb on - strand, within Xcc-8004.1833.1at 1769.608 kb on - strand, within Xcc-8004.1833.1at 1769.608 kb on - strand, within Xcc-8004.1833.1at 1769.712 kb on + strandat 1770.040 kb on + strand, within Xcc-8004.1834.1at 1770.040 kb on + strand, within Xcc-8004.1834.1at 1770.040 kb on + strand, within Xcc-8004.1834.1at 1770.040 kb on + strand, within Xcc-8004.1834.1at 1770.040 kb on + strand, within Xcc-8004.1834.1at 1770.040 kb on + strand, within Xcc-8004.1834.1at 1770.040 kb on + strand, within Xcc-8004.1834.1at 1770.041 kb on - strand, within Xcc-8004.1834.1at 1770.041 kb on - strand, within Xcc-8004.1834.1at 1770.041 kb on - strand, within Xcc-8004.1834.1at 1770.041 kb on - strand, within Xcc-8004.1834.1at 1770.041 kb on - strand, within Xcc-8004.1834.1at 1770.041 kb on - strand, within Xcc-8004.1834.1at 1770.041 kb on - strand, within Xcc-8004.1834.1at 1770.061 kb on + strand, within Xcc-8004.1834.1at 1770.061 kb on + strand, within Xcc-8004.1834.1at 1770.061 kb on + strand, within Xcc-8004.1834.1at 1770.061 kb on + strand, within Xcc-8004.1834.1at 1770.061 kb on + strand, within Xcc-8004.1834.1at 1770.061 kb on + strand, within Xcc-8004.1834.1at 1770.062 kb on - strand, within Xcc-8004.1834.1at 1770.062 kb on - strand, within Xcc-8004.1834.1at 1770.062 kb on - strand, within Xcc-8004.1834.1at 1770.073 kb on + strand, within Xcc-8004.1834.1at 1770.073 kb on + strand, within Xcc-8004.1834.1at 1770.073 kb on + strand, within Xcc-8004.1834.1at 1770.073 kb on + strand, within Xcc-8004.1834.1at 1770.073 kb on + strand, within Xcc-8004.1834.1at 1770.073 kb on + strand, within Xcc-8004.1834.1at 1770.074 kb on - strand, within Xcc-8004.1834.1at 1770.074 kb on - strand, within Xcc-8004.1834.1at 1770.074 kb on - strand, within Xcc-8004.1834.1at 1770.074 kb on - strand, within Xcc-8004.1834.1at 1770.074 kb on - strand, within Xcc-8004.1834.1at 1770.091 kb on + strand, within Xcc-8004.1834.1at 1770.163 kb on + strandat 1770.244 kb on - strandat 1770.244 kb on - strandat 1770.436 kb on + strand, within Xcc-8004.1835.1at 1770.436 kb on + strand, within Xcc-8004.1835.1at 1770.436 kb on + strand, within Xcc-8004.1835.1at 1770.436 kb on + strand, within Xcc-8004.1835.1at 1770.436 kb on + strand, within Xcc-8004.1835.1at 1770.436 kb on + strand, within Xcc-8004.1835.1at 1770.436 kb on + strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1770.437 kb on - strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.094 kb on - strand, within Xcc-8004.1835.1at 1771.094 kb on - strand, within Xcc-8004.1835.1at 1771.094 kb on - strand, within Xcc-8004.1835.1at 1771.094 kb on - strand, within Xcc-8004.1835.1at 1771.094 kb on - strand, within Xcc-8004.1835.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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1,768,799 + +1.2
1,768,799 + +2.1
1,768,800 - +1.2
1,768,868 + Xcc-8004.1832.1 0.13 -1.5
1,768,868 + Xcc-8004.1832.1 0.13 +0.4
1,768,868 + Xcc-8004.1832.1 0.13 -0.9
1,768,868 + Xcc-8004.1832.1 0.13 -1.6
1,768,869 - Xcc-8004.1832.1 0.14 +1.0
1,768,869 - Xcc-8004.1832.1 0.14 +1.1
1,768,869 - Xcc-8004.1832.1 0.14 +0.2
1,769,123 + -1.0
1,769,123 + -0.7
1,769,124 - -1.5
1,769,177 + -0.6
1,769,177 + -1.0
1,769,177 + +0.2
1,769,177 + -2.0
1,769,177 + -0.1
1,769,177 + +0.2
1,769,178 - -1.1
1,769,178 - +0.8
1,769,178 - -0.3
1,769,178 - -1.1
1,769,178 - -1.9
1,769,574 + Xcc-8004.1833.1 0.70 -0.9
1,769,574 + Xcc-8004.1833.1 0.70 -2.3
1,769,574 + Xcc-8004.1833.1 0.70 -1.2
1,769,574 + Xcc-8004.1833.1 0.70 -1.5
1,769,575 - Xcc-8004.1833.1 0.70 -1.2
1,769,607 + Xcc-8004.1833.1 0.76 -0.5
1,769,607 + Xcc-8004.1833.1 0.76 -0.5
1,769,607 + Xcc-8004.1833.1 0.76 -0.1
1,769,607 + Xcc-8004.1833.1 0.76 -0.3
1,769,607 + Xcc-8004.1833.1 0.76 -0.7
1,769,607 + Xcc-8004.1833.1 0.76 -0.2
1,769,607 + Xcc-8004.1833.1 0.76 +1.0
1,769,607 + Xcc-8004.1833.1 0.76 -1.9
1,769,607 + Xcc-8004.1833.1 0.76 +1.4
1,769,607 + Xcc-8004.1833.1 0.76 -0.7
1,769,607 + Xcc-8004.1833.1 0.76 +0.4
1,769,607 + Xcc-8004.1833.1 0.76 -0.0
1,769,607 + Xcc-8004.1833.1 0.76 -0.8
1,769,608 - Xcc-8004.1833.1 0.76 +1.1
1,769,608 - Xcc-8004.1833.1 0.76 +0.7
1,769,608 - Xcc-8004.1833.1 0.76 -0.5
1,769,608 - Xcc-8004.1833.1 0.76 +2.8
1,769,608 - Xcc-8004.1833.1 0.76 -0.3
1,769,712 + -0.6
1,770,040 + Xcc-8004.1834.1 0.69 +0.8
1,770,040 + Xcc-8004.1834.1 0.69 -0.6
1,770,040 + Xcc-8004.1834.1 0.69 +0.1
1,770,040 + Xcc-8004.1834.1 0.69 +0.3
1,770,040 + Xcc-8004.1834.1 0.69 -0.1
1,770,040 + Xcc-8004.1834.1 0.69 +1.6
1,770,040 + Xcc-8004.1834.1 0.69 -1.2
1,770,041 - Xcc-8004.1834.1 0.69 +0.4
1,770,041 - Xcc-8004.1834.1 0.69 +0.3
1,770,041 - Xcc-8004.1834.1 0.69 -0.0
1,770,041 - Xcc-8004.1834.1 0.69 -1.0
1,770,041 - Xcc-8004.1834.1 0.69 -0.3
1,770,041 - Xcc-8004.1834.1 0.69 -0.5
1,770,041 - Xcc-8004.1834.1 0.69 -3.8
1,770,061 + Xcc-8004.1834.1 0.74 +0.7
1,770,061 + Xcc-8004.1834.1 0.74 -0.5
1,770,061 + Xcc-8004.1834.1 0.74 +0.2
1,770,061 + Xcc-8004.1834.1 0.74 -0.6
1,770,061 + Xcc-8004.1834.1 0.74 -1.2
1,770,061 + Xcc-8004.1834.1 0.74 -0.1
1,770,062 - Xcc-8004.1834.1 0.74 +0.9
1,770,062 - Xcc-8004.1834.1 0.74 +0.4
1,770,062 - Xcc-8004.1834.1 0.74 +1.0
1,770,073 + Xcc-8004.1834.1 0.77 -3.2
1,770,073 + Xcc-8004.1834.1 0.77 +1.3
1,770,073 + Xcc-8004.1834.1 0.77 -2.3
1,770,073 + Xcc-8004.1834.1 0.77 -1.3
1,770,073 + Xcc-8004.1834.1 0.77 -1.8
1,770,073 + Xcc-8004.1834.1 0.77 -2.1
1,770,074 - Xcc-8004.1834.1 0.77 +2.8
1,770,074 - Xcc-8004.1834.1 0.77 -0.9
1,770,074 - Xcc-8004.1834.1 0.77 -0.5
1,770,074 - Xcc-8004.1834.1 0.77 -0.9
1,770,074 - Xcc-8004.1834.1 0.77 -1.5
1,770,091 + Xcc-8004.1834.1 0.81 -0.9
1,770,163 + -0.3
1,770,244 - -0.5
1,770,244 - +0.2
1,770,436 + Xcc-8004.1835.1 0.13 -0.3
1,770,436 + Xcc-8004.1835.1 0.13 -1.3
1,770,436 + Xcc-8004.1835.1 0.13 +1.2
1,770,436 + Xcc-8004.1835.1 0.13 +0.5
1,770,436 + Xcc-8004.1835.1 0.13 +1.6
1,770,436 + Xcc-8004.1835.1 0.13 +1.8
1,770,436 + Xcc-8004.1835.1 0.13 -0.7
1,770,437 - Xcc-8004.1835.1 0.14 -1.1
1,770,437 - Xcc-8004.1835.1 0.14 +1.8
1,770,437 - Xcc-8004.1835.1 0.14 +2.4
1,770,437 - Xcc-8004.1835.1 0.14 -0.9
1,770,437 - Xcc-8004.1835.1 0.14 -0.0
1,770,437 - Xcc-8004.1835.1 0.14 +1.4
1,770,437 - Xcc-8004.1835.1 0.14 -1.0
1,770,437 - Xcc-8004.1835.1 0.14 +0.4
1,770,437 - Xcc-8004.1835.1 0.14 -1.1
1,770,437 - Xcc-8004.1835.1 0.14 -0.4
1,770,437 - Xcc-8004.1835.1 0.14 -1.3
1,770,437 - Xcc-8004.1835.1 0.14 +0.3
1,770,437 - Xcc-8004.1835.1 0.14 -0.3
1,770,437 - Xcc-8004.1835.1 0.14 -1.8
1,770,437 - Xcc-8004.1835.1 0.14 -0.5
1,770,437 - Xcc-8004.1835.1 0.14 +0.1
1,770,437 - Xcc-8004.1835.1 0.14 +0.1
1,770,437 - Xcc-8004.1835.1 0.14 -0.6
1,771,093 + Xcc-8004.1835.1 0.69 -0.7
1,771,093 + Xcc-8004.1835.1 0.69 +0.5
1,771,093 + Xcc-8004.1835.1 0.69 -0.6
1,771,093 + Xcc-8004.1835.1 0.69 +0.1
1,771,093 + Xcc-8004.1835.1 0.69 -1.7
1,771,093 + Xcc-8004.1835.1 0.69 -0.7
1,771,093 + Xcc-8004.1835.1 0.69 -0.9
1,771,094 - Xcc-8004.1835.1 0.69 +2.5
1,771,094 - Xcc-8004.1835.1 0.69 -1.9
1,771,094 - Xcc-8004.1835.1 0.69 -0.2
1,771,094 - Xcc-8004.1835.1 0.69 -2.6
1,771,094 - Xcc-8004.1835.1 0.69 -1.0

Or see this region's nucleotide sequence