Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.172.1 and Xcc-8004.173.1 are separated by 63 nucleotides Xcc-8004.173.1 and Xcc-8004.174.1 are separated by 306 nucleotides
Xcc-8004.172.1: Xcc-8004.172.1 - Mobile element protein, at 163,742 to 164,440
Xcc-8004.172.1
Xcc-8004.173.1: Xcc-8004.173.1 - Mobile element protein, at 164,504 to 164,956
Xcc-8004.173.1
Xcc-8004.174.1: Xcc-8004.174.1 - RhsD protein, at 165,263 to 169,507
Xcc-8004.174.1
Position (kb) 164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 163.527 kb on + strand at 163.539 kb on - strand at 163.563 kb on + strand at 163.597 kb on - strand at 163.604 kb on - strand at 163.607 kb on + strand at 163.608 kb on - strand at 163.610 kb on + strand at 164.967 kb on + strand at 165.017 kb on + strand at 165.045 kb on + strand at 165.102 kb on - strand at 165.135 kb on + strand at 165.135 kb on + strand at 165.136 kb on - strand at 165.136 kb on - strand at 165.136 kb on - strand at 165.257 kb on + strand at 165.258 kb on - strand at 165.297 kb on - strand at 165.315 kb on + strand at 165.473 kb on + strand at 165.474 kb on - strand at 165.479 kb on + strand at 165.479 kb on + strand at 165.487 kb on - strand at 165.490 kb on + strand at 165.491 kb on - strand at 165.532 kb on + strand at 165.532 kb on + strand at 165.533 kb on - strand at 165.533 kb on - strand at 165.533 kb on - strand at 165.533 kb on - strand at 165.543 kb on - strand at 165.584 kb on + strand at 165.585 kb on - strand at 165.595 kb on - strand at 165.595 kb on - strand at 165.595 kb on - strand at 165.605 kb on + strand at 165.605 kb on + strand at 165.635 kb on - strand at 165.648 kb on - strand at 165.707 kb on + strand, within Xcc-8004.174.1 at 165.731 kb on - strand, within Xcc-8004.174.1 at 165.731 kb on - strand, within Xcc-8004.174.1 at 165.754 kb on + strand, within Xcc-8004.174.1 at 165.755 kb on - strand, within Xcc-8004.174.1 at 165.771 kb on - strand, within Xcc-8004.174.1 at 165.773 kb on + strand, within Xcc-8004.174.1 at 165.795 kb on + strand, within Xcc-8004.174.1 at 165.832 kb on - strand, within Xcc-8004.174.1 at 165.832 kb on - strand, within Xcc-8004.174.1 at 165.843 kb on + strand, within Xcc-8004.174.1 at 165.843 kb on + strand, within Xcc-8004.174.1 at 165.844 kb on - strand, within Xcc-8004.174.1 at 165.845 kb on + strand, within Xcc-8004.174.1 at 165.846 kb on - strand, within Xcc-8004.174.1 at 165.847 kb on + strand, within Xcc-8004.174.1 at 165.847 kb on + strand, within Xcc-8004.174.1 at 165.848 kb on - strand, within Xcc-8004.174.1 at 165.919 kb on - strand, within Xcc-8004.174.1 at 165.925 kb on + strand, within Xcc-8004.174.1 at 165.925 kb on + strand, within Xcc-8004.174.1 at 165.925 kb on + strand, within Xcc-8004.174.1 at 165.925 kb on + strand, within Xcc-8004.174.1 at 165.926 kb on - strand, within Xcc-8004.174.1 at 165.926 kb on - strand, within Xcc-8004.174.1 at 165.954 kb on + strand, within Xcc-8004.174.1 at 165.954 kb on + strand, within Xcc-8004.174.1 at 165.954 kb on + strand, within Xcc-8004.174.1 at 165.954 kb on + strand, within Xcc-8004.174.1 at 165.954 kb on + strand, within Xcc-8004.174.1 at 165.955 kb on - strand, within Xcc-8004.174.1 at 165.955 kb on - strand, within Xcc-8004.174.1 at 165.955 kb on - strand, within Xcc-8004.174.1 at 165.955 kb on - strand, within Xcc-8004.174.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 163,527 + -0.8 163,539 - -2.0 163,563 + -1.7 163,597 - +2.7 163,604 - -0.7 163,607 + -0.9 163,608 - +3.2 163,610 + -0.1 164,967 + +1.7 165,017 + +0.5 165,045 + -0.5 165,102 - +0.7 165,135 + -0.6 165,135 + -1.0 165,136 - -0.7 165,136 - -0.5 165,136 - -0.6 165,257 + -3.1 165,258 - +2.8 165,297 - -0.3 165,315 + -2.2 165,473 + +2.1 165,474 - +0.3 165,479 + -0.6 165,479 + +0.4 165,487 - -1.2 165,490 + +0.7 165,491 - -0.0 165,532 + -0.1 165,532 + -2.4 165,533 - +1.8 165,533 - +2.0 165,533 - -0.6 165,533 - +0.4 165,543 - +2.1 165,584 + +0.5 165,585 - -2.1 165,595 - -0.3 165,595 - +0.5 165,595 - -0.4 165,605 + -2.9 165,605 + +0.6 165,635 - +0.4 165,648 - +0.1 165,707 + Xcc-8004.174.1 0.10 +0.5 165,731 - Xcc-8004.174.1 0.11 +0.3 165,731 - Xcc-8004.174.1 0.11 +0.6 165,754 + Xcc-8004.174.1 0.12 -1.9 165,755 - Xcc-8004.174.1 0.12 +0.2 165,771 - Xcc-8004.174.1 0.12 -0.0 165,773 + Xcc-8004.174.1 0.12 -2.9 165,795 + Xcc-8004.174.1 0.13 -2.5 165,832 - Xcc-8004.174.1 0.13 +0.7 165,832 - Xcc-8004.174.1 0.13 +0.6 165,843 + Xcc-8004.174.1 0.14 -0.7 165,843 + Xcc-8004.174.1 0.14 +2.4 165,844 - Xcc-8004.174.1 0.14 -2.2 165,845 + Xcc-8004.174.1 0.14 -0.2 165,846 - Xcc-8004.174.1 0.14 +2.1 165,847 + Xcc-8004.174.1 0.14 +0.1 165,847 + Xcc-8004.174.1 0.14 +0.0 165,848 - Xcc-8004.174.1 0.14 -0.1 165,919 - Xcc-8004.174.1 0.15 +0.3 165,925 + Xcc-8004.174.1 0.16 +0.1 165,925 + Xcc-8004.174.1 0.16 -1.7 165,925 + Xcc-8004.174.1 0.16 -0.4 165,925 + Xcc-8004.174.1 0.16 -0.3 165,926 - Xcc-8004.174.1 0.16 +2.8 165,926 - Xcc-8004.174.1 0.16 +0.9 165,954 + Xcc-8004.174.1 0.16 -0.1 165,954 + Xcc-8004.174.1 0.16 +0.8 165,954 + Xcc-8004.174.1 0.16 -0.6 165,954 + Xcc-8004.174.1 0.16 +0.0 165,954 + Xcc-8004.174.1 0.16 -0.2 165,955 - Xcc-8004.174.1 0.16 +0.2 165,955 - Xcc-8004.174.1 0.16 -0.7 165,955 - Xcc-8004.174.1 0.16 -0.3 165,955 - Xcc-8004.174.1 0.16 -2.4
Or see this region's nucleotide sequence