Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1683.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 2 6 dpi (25 plantes)
1,616,427	+				-0.1
1,616,428	-				+1.7
1,616,468	+				-0.6
1,616,468	+				+0.2
1,616,561	+		Xcc-8004.1682.1	0.34	-0.7
1,616,573	+		Xcc-8004.1682.1	0.39	-0.4
1,616,573	+		Xcc-8004.1682.1	0.39	-0.1
1,616,573	+		Xcc-8004.1682.1	0.39	-0.1
1,616,573	+		Xcc-8004.1682.1	0.39	-1.3
1,616,573	+		Xcc-8004.1682.1	0.39	+0.3
1,616,573	+		Xcc-8004.1682.1	0.39	+1.5
1,616,573	+		Xcc-8004.1682.1	0.39	-0.6
1,616,574	-		Xcc-8004.1682.1	0.39	+1.2
1,616,659	-		Xcc-8004.1682.1	0.70	-0.6
1,616,659	-		Xcc-8004.1682.1	0.70	+1.9
1,616,705	+		Xcc-8004.1682.1	0.87	-0.5
1,616,705	+		Xcc-8004.1682.1	0.87	+0.6
1,616,705	+		Xcc-8004.1682.1	0.87	+0.2
1,616,705	+		Xcc-8004.1682.1	0.87	-0.4
1,616,705	+		Xcc-8004.1682.1	0.87	-0.4
1,616,705	+		Xcc-8004.1682.1	0.87	-1.0
1,616,705	+		Xcc-8004.1682.1	0.87	-0.3
1,616,706	-		Xcc-8004.1682.1	0.88	+1.7
1,616,706	-		Xcc-8004.1682.1	0.88	-0.6
1,616,706	-		Xcc-8004.1682.1	0.88	+3.1
1,616,771	+				+0.6
1,616,771	+				-1.3
1,616,771	+				-1.2
1,616,771	+				-0.1
1,616,772	-				-1.3
1,616,772	-				+1.1
1,616,772	-				-0.4
1,617,171	+		Xcc-8004.1683.1	0.18	-0.6
1,617,171	+		Xcc-8004.1683.1	0.18	+1.1
1,617,171	+		Xcc-8004.1683.1	0.18	+0.8
1,617,171	+		Xcc-8004.1683.1	0.18	+0.3
1,617,171	+		Xcc-8004.1683.1	0.18	-0.8
1,617,171	+		Xcc-8004.1683.1	0.18	+0.3
1,617,171	+		Xcc-8004.1683.1	0.18	-0.1
1,617,171	+		Xcc-8004.1683.1	0.18	+2.1
1,617,171	+		Xcc-8004.1683.1	0.18	-0.9
1,617,172	-		Xcc-8004.1683.1	0.18	+0.7
1,617,172	-		Xcc-8004.1683.1	0.18	+0.2
1,617,172	-		Xcc-8004.1683.1	0.18	+0.5
1,617,172	-		Xcc-8004.1683.1	0.18	+0.1
1,617,172	-		Xcc-8004.1683.1	0.18	-0.0
1,617,172	-		Xcc-8004.1683.1	0.18	+1.4
1,617,172	-		Xcc-8004.1683.1	0.18	+1.2
1,617,172	-		Xcc-8004.1683.1	0.18	-1.4
1,617,801	+		Xcc-8004.1683.1	0.60	-1.1
1,617,801	+		Xcc-8004.1683.1	0.60	+0.3
1,617,802	-		Xcc-8004.1683.1	0.60	-0.3
1,617,802	-		Xcc-8004.1683.1	0.60	-0.8
1,617,873	+		Xcc-8004.1683.1	0.65	-0.2
1,617,873	+		Xcc-8004.1683.1	0.65	+0.2
1,617,874	-		Xcc-8004.1683.1	0.65	+0.5
1,617,874	-		Xcc-8004.1683.1	0.65	+0.2
1,617,874	-		Xcc-8004.1683.1	0.65	+0.7
1,617,874	-		Xcc-8004.1683.1	0.65	-0.0
1,617,888	+		Xcc-8004.1683.1	0.66	+1.4
1,617,888	+		Xcc-8004.1683.1	0.66	-1.9
1,617,888	+		Xcc-8004.1683.1	0.66	+1.3
1,617,888	+		Xcc-8004.1683.1	0.66	-1.3
1,617,888	+		Xcc-8004.1683.1	0.66	+1.1
1,617,889	-		Xcc-8004.1683.1	0.66	+1.0
1,617,889	-		Xcc-8004.1683.1	0.66	+0.8
1,617,889	-		Xcc-8004.1683.1	0.66	+0.6
1,617,889	-		Xcc-8004.1683.1	0.66	+2.9
1,617,889	-		Xcc-8004.1683.1	0.66	-0.1
1,618,020	+		Xcc-8004.1683.1	0.75	-2.4
1,618,020	+		Xcc-8004.1683.1	0.75	+0.5
1,618,020	+		Xcc-8004.1683.1	0.75	-3.2
1,618,020	+		Xcc-8004.1683.1	0.75	-0.9
1,618,021	-		Xcc-8004.1683.1	0.75	-0.3
1,618,021	-		Xcc-8004.1683.1	0.75	+0.0
1,618,107	+		Xcc-8004.1683.1	0.81	+0.5
1,618,108	-		Xcc-8004.1683.1	0.81	-0.4
1,618,264	+				+0.1
1,618,264	+				-0.2
1,618,265	-				-0.1
1,618,265	-				-0.8
1,618,265	-				-3.9
1,618,266	+				+1.1
1,618,266	+				-1.3
1,618,266	+				-1.0
1,618,266	+				-0.5
1,618,267	-				+0.8
1,618,267	-				-1.0
1,618,267	-				-0.3
1,618,323	+				+0.3
1,618,323	+				-1.0
1,618,323	+				+1.1
1,618,323	+				+0.4
1,618,323	+				+0.4
1,618,323	+				+0.6
1,618,323	+				+0.1
1,618,323	+				-0.7
1,618,324	-				-0.0
1,618,324	-				-1.0
1,618,324	-				-1.1
1,618,324	-				+0.7
1,618,324	-				-0.6
1,618,324	-				-0.8
1,618,324	-				-0.8
1,618,324	-				-0.3
1,618,324	-				-1.6
1,618,324	-				+1.7
1,618,396	+				-0.6
1,618,418	+				-1.2
1,618,418	+				+0.5
1,618,418	+				+2.5
1,618,419	-				+0.2
1,618,419	-				+0.4
1,618,419	-				+0.4
1,618,419	-				+2.9
1,618,419	-				-1.0
1,618,419	-				+0.4
1,618,419	-				-0.3
1,618,431	+				+3.5
1,618,461	+				-1.7
1,618,510	-				+2.5
1,618,608	-				-2.6
1,618,608	-				-0.5
1,618,608	-				+0.9
1,618,608	-				+1.6
1,618,612	+				-0.5
1,618,612	+				-0.9
1,618,613	-				+0.3
1,618,630	+		Xcc-8004.1684.1	0.10	-0.6
1,618,630	+		Xcc-8004.1684.1	0.10	-1.1
1,618,630	+		Xcc-8004.1684.1	0.10	+1.0
1,618,659	+		Xcc-8004.1684.1	0.19	+1.1
1,618,659	+		Xcc-8004.1684.1	0.19	+0.3
1,618,659	+		Xcc-8004.1684.1	0.19	+0.7
1,618,659	+		Xcc-8004.1684.1	0.19	+1.7
1,618,659	+		Xcc-8004.1684.1	0.19	-0.8
1,618,660	-		Xcc-8004.1684.1	0.19	-1.0
1,618,660	-		Xcc-8004.1684.1	0.19	+0.7
1,618,947	-				-0.6
1,618,980	-				-0.8
1,619,086	-		Xcc-8004.1685.1	0.72	-2.1
1,619,086	-		Xcc-8004.1685.1	0.72	+1.6
1,619,110	+				-0.1
1,619,110	+				-3.1
1,619,111	-				-0.2
1,619,111	-				+0.1
1,619,120	+				+0.5
1,619,120	+				-0.3
1,619,121	-				+0.3
1,619,121	-				+0.1
1,619,181	+				-2.5
1,619,199	+				+0.9
1,619,199	+				-1.1
1,619,199	+				+1.7
1,619,199	+				-2.0
1,619,199	+				-0.3
1,619,199	+				+0.5
1,619,199	+				+0.6
1,619,199	+				-0.2
1,619,199	+				-1.1
1,619,199	+				+1.7
1,619,199	+				-2.3
1,619,199	+				+1.3
1,619,199	+				+0.5
1,619,199	+				+1.0
1,619,199	+				+0.1
1,619,199	+				-0.8
1,619,199	+				+1.1
1,619,199	+				-1.2
1,619,199	+				+0.9
1,619,200	-				-0.6
1,619,200	-				-0.1
1,619,200	-				+0.3
1,619,200	-				+0.2
1,619,200	-				-0.3
1,619,200	-				-2.0
1,619,200	-				-0.0
1,619,200	-				+1.8
1,619,200	-				+1.0
1,619,200	-				-2.5
1,619,200	-				+0.3
1,619,200	-				-1.4
1,619,200	-				+1.3
1,619,240	+				-0.6
1,619,240	+				-0.5
1,619,300	+				+0.2
1,619,300	+				+2.4
1,619,301	-				+1.4
1,619,301	-				+0.2
1,619,301	-				+1.3
1,619,347	-				-0.1
1,619,347	-				+1.8
1,619,347	-				+0.5