Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.816.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.813.1 and Xcc-8004.816.1 are separated by 421 nucleotidesXcc-8004.816.1 and Xcc-8004.817.1 are separated by 709 nucleotides Xcc-8004.813.1: Xcc-8004.813.1 - Predicted Zn-dependent peptidases, at 757,346 to 760,225 Xcc-8004.813.1 Xcc-8004.816.1: Xcc-8004.816.1 - histidine kinase/response regulator hybrid protein, at 760,647 to 763,244 Xcc-8004.816.1 Xcc-8004.817.1: Xcc-8004.817.1 - chemotaxis protein, at 763,954 to 766,098 Xcc-8004.817.1 Position (kb) 760 761 762 763 764Strain fitness (log2 ratio) -2 -1 0 1 2 3at 759.687 kb on + strand, within Xcc-8004.813.1at 759.688 kb on - strand, within Xcc-8004.813.1at 759.808 kb on + strand, within Xcc-8004.813.1at 759.840 kb on + strand, within Xcc-8004.813.1at 759.840 kb on + strand, within Xcc-8004.813.1at 759.840 kb on + strand, within Xcc-8004.813.1at 759.841 kb on - strand, within Xcc-8004.813.1at 759.841 kb on - strand, within Xcc-8004.813.1at 759.841 kb on - strand, within Xcc-8004.813.1at 760.092 kb on + strandat 760.092 kb on + strandat 760.093 kb on - strandat 760.412 kb on - strandat 760.412 kb on - strandat 760.412 kb on - strandat 760.432 kb on - strandat 760.545 kb on + strandat 760.545 kb on + strandat 760.602 kb on - strandat 760.778 kb on + strandat 760.778 kb on + strandat 760.778 kb on + strandat 760.778 kb on + strandat 760.779 kb on - strandat 760.779 kb on - strandat 760.893 kb on + strandat 760.893 kb on + strandat 760.995 kb on + strand, within Xcc-8004.816.1at 760.995 kb on + strand, within Xcc-8004.816.1at 760.996 kb on - strand, within Xcc-8004.816.1at 760.996 kb on - strand, within Xcc-8004.816.1at 760.996 kb on - strand, within Xcc-8004.816.1at 760.996 kb on - strand, within Xcc-8004.816.1at 760.996 kb on - strand, within Xcc-8004.816.1at 761.028 kb on + strand, within Xcc-8004.816.1at 761.035 kb on - strand, within Xcc-8004.816.1at 761.329 kb on - strand, within Xcc-8004.816.1at 761.377 kb on + strand, within Xcc-8004.816.1at 761.676 kb on + strand, within Xcc-8004.816.1at 761.677 kb on - strand, within Xcc-8004.816.1at 761.775 kb on + strand, within Xcc-8004.816.1at 761.775 kb on + strand, within Xcc-8004.816.1at 761.775 kb on + strand, within Xcc-8004.816.1at 761.775 kb on + strand, within Xcc-8004.816.1at 761.775 kb on + strand, within Xcc-8004.816.1at 761.776 kb on - strand, within Xcc-8004.816.1at 761.776 kb on - strand, within Xcc-8004.816.1at 761.776 kb on - strand, within Xcc-8004.816.1at 761.776 kb on - strand, within Xcc-8004.816.1at 761.913 kb on + strand, within Xcc-8004.816.1at 762.085 kb on - strand, within Xcc-8004.816.1at 762.196 kb on - strand, within Xcc-8004.816.1at 762.213 kb on + strand, within Xcc-8004.816.1at 762.214 kb on - strand, within Xcc-8004.816.1at 762.238 kb on + strand, within Xcc-8004.816.1at 762.272 kb on + strand, within Xcc-8004.816.1at 762.582 kb on + strand, within Xcc-8004.816.1at 762.582 kb on + strand, within Xcc-8004.816.1at 762.583 kb on - strand, within Xcc-8004.816.1at 762.583 kb on - strand, within Xcc-8004.816.1at 763.180 kb on - strandat 763.180 kb on - strandat 763.180 kb on - strandat 763.403 kb on + strandat 763.429 kb on + strandat 763.429 kb on + strandat 763.430 kb on - strandat 763.567 kb on + strandat 763.567 kb on + strandat 763.601 kb on + strandat 763.601 kb on + strandat 763.606 kb on - strandat 763.854 kb on + strandat 763.891 kb on - strandat 763.901 kb on + strandat 763.902 kb on - strandat 763.946 kb on - strandat 763.966 kb on + strandat 763.967 kb on - strandat 763.967 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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759,687 + Xcc-8004.813.1 0.81 -0.7
759,688 - Xcc-8004.813.1 0.81 -0.8
759,808 + Xcc-8004.813.1 0.85 -1.5
759,840 + Xcc-8004.813.1 0.87 -0.5
759,840 + Xcc-8004.813.1 0.87 +1.3
759,840 + Xcc-8004.813.1 0.87 +1.3
759,841 - Xcc-8004.813.1 0.87 -1.4
759,841 - Xcc-8004.813.1 0.87 +0.3
759,841 - Xcc-8004.813.1 0.87 +2.1
760,092 + +0.6
760,092 + -0.4
760,093 - -1.0
760,412 - -0.3
760,412 - -0.2
760,412 - +0.9
760,432 - -0.1
760,545 + +0.3
760,545 + -0.8
760,602 - -0.1
760,778 + -0.1
760,778 + -2.2
760,778 + -1.2
760,778 + +0.1
760,779 - -0.3
760,779 - -0.2
760,893 + -2.5
760,893 + +1.3
760,995 + Xcc-8004.816.1 0.13 +2.0
760,995 + Xcc-8004.816.1 0.13 +0.1
760,996 - Xcc-8004.816.1 0.13 -0.0
760,996 - Xcc-8004.816.1 0.13 -0.8
760,996 - Xcc-8004.816.1 0.13 -1.1
760,996 - Xcc-8004.816.1 0.13 -0.2
760,996 - Xcc-8004.816.1 0.13 -0.4
761,028 + Xcc-8004.816.1 0.15 +0.9
761,035 - Xcc-8004.816.1 0.15 -0.6
761,329 - Xcc-8004.816.1 0.26 -1.3
761,377 + Xcc-8004.816.1 0.28 +0.5
761,676 + Xcc-8004.816.1 0.40 -1.6
761,677 - Xcc-8004.816.1 0.40 +0.6
761,775 + Xcc-8004.816.1 0.43 -1.2
761,775 + Xcc-8004.816.1 0.43 -0.2
761,775 + Xcc-8004.816.1 0.43 -2.2
761,775 + Xcc-8004.816.1 0.43 +0.2
761,775 + Xcc-8004.816.1 0.43 -1.2
761,776 - Xcc-8004.816.1 0.43 +0.8
761,776 - Xcc-8004.816.1 0.43 -0.3
761,776 - Xcc-8004.816.1 0.43 +3.4
761,776 - Xcc-8004.816.1 0.43 +0.7
761,913 + Xcc-8004.816.1 0.49 +0.5
762,085 - Xcc-8004.816.1 0.55 +0.1
762,196 - Xcc-8004.816.1 0.60 +1.0
762,213 + Xcc-8004.816.1 0.60 -0.4
762,214 - Xcc-8004.816.1 0.60 -1.8
762,238 + Xcc-8004.816.1 0.61 +1.8
762,272 + Xcc-8004.816.1 0.63 +0.0
762,582 + Xcc-8004.816.1 0.74 +0.7
762,582 + Xcc-8004.816.1 0.74 +0.3
762,583 - Xcc-8004.816.1 0.75 +1.0
762,583 - Xcc-8004.816.1 0.75 +0.8
763,180 - -0.6
763,180 - +0.2
763,180 - +1.4
763,403 + -2.0
763,429 + -1.8
763,429 + +0.5
763,430 - -0.1
763,567 + +1.3
763,567 + +0.6
763,601 + +0.9
763,601 + +0.1
763,606 - +0.7
763,854 + -0.1
763,891 - -0.1
763,901 + +0.0
763,902 - +1.0
763,946 - -0.4
763,966 + -0.7
763,967 - -0.3
763,967 - -0.6

Or see this region's nucleotide sequence