Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5074.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5072.1 and Xcc-8004.5073.1 overlap by 8 nucleotidesXcc-8004.5073.1 and Xcc-8004.5074.1 are separated by 217 nucleotidesXcc-8004.5074.1 and Xcc-8004.5075.1 overlap by 1 nucleotidesXcc-8004.5075.1 and Xcc-8004.5076.1 overlap by 4 nucleotides Xcc-8004.5072.1: Xcc-8004.5072.1 - Ankyrin-like protein, at 4,811,597 to 4,814,920 Xcc-8004.5072.1 Xcc-8004.5073.1: Xcc-8004.5073.1 - FIG01210860: hypothetical protein, at 4,814,913 to 4,815,173 Xcc-8004.5073.1 Xcc-8004.5074.1: Xcc-8004.5074.1 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 4,815,391 to 4,816,587 Xcc-8004.5074.1 Xcc-8004.5075.1: Xcc-8004.5075.1 - 3-oxoacyl-[ACP] synthase, at 4,816,587 to 4,817,360 Xcc-8004.5075.1 Xcc-8004.5076.1: Xcc-8004.5076.1 - FIG143263: Glycosyl transferase @ Dolichyl-phosphate mannose synthase related protein, at 4,817,357 to 4,818,178 Xcc-8004.5076.1 Position (kb) 4815 4816 4817Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4814.965 kb on + strand, within Xcc-8004.5073.1at 4814.965 kb on + strand, within Xcc-8004.5073.1at 4814.966 kb on - strand, within Xcc-8004.5073.1at 4814.966 kb on - strand, within Xcc-8004.5073.1at 4814.966 kb on - strand, within Xcc-8004.5073.1at 4814.966 kb on - strand, within Xcc-8004.5073.1at 4814.966 kb on - strand, within Xcc-8004.5073.1at 4815.042 kb on + strand, within Xcc-8004.5073.1at 4815.125 kb on - strand, within Xcc-8004.5073.1at 4815.125 kb on - strand, within Xcc-8004.5073.1at 4815.125 kb on - strand, within Xcc-8004.5073.1at 4815.125 kb on - strand, within Xcc-8004.5073.1at 4815.156 kb on - strandat 4815.156 kb on - strandat 4815.156 kb on - strandat 4815.156 kb on - strandat 4815.158 kb on - strandat 4815.158 kb on - strandat 4815.158 kb on - strandat 4815.158 kb on - strandat 4815.164 kb on - strandat 4815.164 kb on - strandat 4815.164 kb on - strandat 4815.164 kb on - strandat 4815.164 kb on - strandat 4815.192 kb on + strandat 4815.192 kb on + strandat 4815.193 kb on - strandat 4815.193 kb on - strandat 4815.193 kb on - strandat 4815.193 kb on - strandat 4815.193 kb on - strandat 4815.317 kb on + strandat 4815.330 kb on + strandat 4815.331 kb on - strandat 4815.331 kb on - strandat 4815.331 kb on - strandat 4815.331 kb on - strandat 4815.332 kb on + strandat 4815.332 kb on + strandat 4815.332 kb on + strandat 4815.332 kb on + strandat 4815.332 kb on + strandat 4815.332 kb on + strandat 4815.332 kb on + strandat 4815.332 kb on + strandat 4815.333 kb on - strandat 4815.333 kb on - strandat 4815.333 kb on - strandat 4815.333 kb on - strandat 4815.333 kb on - strandat 4815.333 kb on - strandat 4815.333 kb on - strandat 4815.333 kb on - strandat 4815.333 kb on - strandat 4815.333 kb on - strandat 4815.333 kb on - strandat 4815.548 kb on + strand, within Xcc-8004.5074.1at 4815.548 kb on + strand, within Xcc-8004.5074.1at 4815.548 kb on + strand, within Xcc-8004.5074.1at 4815.548 kb on + strand, within Xcc-8004.5074.1at 4815.548 kb on + strand, within Xcc-8004.5074.1at 4815.549 kb on - strand, within Xcc-8004.5074.1at 4815.563 kb on + strand, within Xcc-8004.5074.1at 4815.563 kb on + strand, within Xcc-8004.5074.1at 4815.563 kb on + strand, within Xcc-8004.5074.1at 4815.564 kb on - strand, within Xcc-8004.5074.1at 4815.564 kb on - strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.736 kb on + strand, within Xcc-8004.5074.1at 4815.736 kb on + strand, within Xcc-8004.5074.1at 4815.737 kb on - strand, within Xcc-8004.5074.1at 4815.737 kb on - strand, within Xcc-8004.5074.1at 4815.737 kb on - strand, within Xcc-8004.5074.1at 4815.737 kb on - strand, within Xcc-8004.5074.1at 4815.804 kb on + strand, within Xcc-8004.5074.1at 4815.805 kb on - strand, within Xcc-8004.5074.1at 4815.966 kb on + strand, within Xcc-8004.5074.1at 4815.966 kb on + strand, within Xcc-8004.5074.1at 4815.966 kb on + strand, within Xcc-8004.5074.1at 4815.966 kb on + strand, within Xcc-8004.5074.1at 4815.967 kb on - strand, within Xcc-8004.5074.1at 4815.967 kb on - strand, within Xcc-8004.5074.1at 4815.967 kb on - strand, within Xcc-8004.5074.1at 4816.132 kb on + strand, within Xcc-8004.5074.1at 4816.132 kb on + strand, within Xcc-8004.5074.1at 4816.132 kb on + strand, within Xcc-8004.5074.1at 4816.133 kb on - strand, within Xcc-8004.5074.1at 4816.133 kb on - strand, within Xcc-8004.5074.1at 4816.138 kb on + strand, within Xcc-8004.5074.1at 4816.138 kb on + strand, within Xcc-8004.5074.1at 4816.255 kb on + strand, within Xcc-8004.5074.1at 4816.255 kb on + strand, within Xcc-8004.5074.1at 4816.255 kb on + strand, within Xcc-8004.5074.1at 4816.256 kb on - strand, within Xcc-8004.5074.1at 4816.519 kb on + strandat 4816.519 kb on + strandat 4816.520 kb on - strandat 4816.822 kb on + strand, within Xcc-8004.5075.1at 4816.822 kb on + strand, within Xcc-8004.5075.1at 4816.822 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4817.316 kb on + strandat 4817.316 kb on + strandat 4817.316 kb on + strandat 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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4,814,965 + Xcc-8004.5073.1 0.20 +2.9
4,814,965 + Xcc-8004.5073.1 0.20 -1.3
4,814,966 - Xcc-8004.5073.1 0.20 +1.1
4,814,966 - Xcc-8004.5073.1 0.20 -2.9
4,814,966 - Xcc-8004.5073.1 0.20 +0.3
4,814,966 - Xcc-8004.5073.1 0.20 -0.0
4,814,966 - Xcc-8004.5073.1 0.20 +1.8
4,815,042 + Xcc-8004.5073.1 0.49 +2.0
4,815,125 - Xcc-8004.5073.1 0.81 -0.4
4,815,125 - Xcc-8004.5073.1 0.81 +1.0
4,815,125 - Xcc-8004.5073.1 0.81 -2.1
4,815,125 - Xcc-8004.5073.1 0.81 -0.1
4,815,156 - +2.1
4,815,156 - -0.8
4,815,156 - -0.3
4,815,156 - +0.6
4,815,158 - -1.1
4,815,158 - +1.3
4,815,158 - +0.3
4,815,158 - -1.5
4,815,164 - -1.4
4,815,164 - +1.1
4,815,164 - +0.3
4,815,164 - -0.8
4,815,164 - +1.6
4,815,192 + +0.2
4,815,192 + +2.2
4,815,193 - -0.7
4,815,193 - -0.7
4,815,193 - +0.9
4,815,193 - -0.1
4,815,193 - -0.7
4,815,317 + +1.6
4,815,330 + -1.1
4,815,331 - +0.8
4,815,331 - +1.3
4,815,331 - +0.1
4,815,331 - -0.9
4,815,332 + -1.8
4,815,332 + -0.1
4,815,332 + -1.5
4,815,332 + -0.7
4,815,332 + -1.7
4,815,332 + -0.2
4,815,332 + -0.1
4,815,332 + -0.7
4,815,333 - -0.8
4,815,333 - +0.7
4,815,333 - -1.7
4,815,333 - +0.2
4,815,333 - +3.2
4,815,333 - -0.9
4,815,333 - +1.0
4,815,333 - +0.5
4,815,333 - -1.0
4,815,333 - +0.1
4,815,333 - +1.9
4,815,548 + Xcc-8004.5074.1 0.13 -1.2
4,815,548 + Xcc-8004.5074.1 0.13 -0.1
4,815,548 + Xcc-8004.5074.1 0.13 -1.5
4,815,548 + Xcc-8004.5074.1 0.13 +1.6
4,815,548 + Xcc-8004.5074.1 0.13 +2.5
4,815,549 - Xcc-8004.5074.1 0.13 +0.8
4,815,563 + Xcc-8004.5074.1 0.14 +1.0
4,815,563 + Xcc-8004.5074.1 0.14 -1.2
4,815,563 + Xcc-8004.5074.1 0.14 +3.1
4,815,564 - Xcc-8004.5074.1 0.14 -1.2
4,815,564 - Xcc-8004.5074.1 0.14 +0.2
4,815,620 + Xcc-8004.5074.1 0.19 -1.6
4,815,620 + Xcc-8004.5074.1 0.19 -0.3
4,815,620 + Xcc-8004.5074.1 0.19 -0.2
4,815,620 + Xcc-8004.5074.1 0.19 -0.4
4,815,620 + Xcc-8004.5074.1 0.19 +0.6
4,815,620 + Xcc-8004.5074.1 0.19 +0.6
4,815,620 + Xcc-8004.5074.1 0.19 +1.1
4,815,621 - Xcc-8004.5074.1 0.19 +0.9
4,815,621 - Xcc-8004.5074.1 0.19 -2.3
4,815,621 - Xcc-8004.5074.1 0.19 +0.8
4,815,621 - Xcc-8004.5074.1 0.19 -1.1
4,815,621 - Xcc-8004.5074.1 0.19 -0.6
4,815,621 - Xcc-8004.5074.1 0.19 +0.9
4,815,736 + Xcc-8004.5074.1 0.29 +0.8
4,815,736 + Xcc-8004.5074.1 0.29 +0.3
4,815,737 - Xcc-8004.5074.1 0.29 -0.1
4,815,737 - Xcc-8004.5074.1 0.29 +0.6
4,815,737 - Xcc-8004.5074.1 0.29 -0.3
4,815,737 - Xcc-8004.5074.1 0.29 +0.9
4,815,804 + Xcc-8004.5074.1 0.35 +1.7
4,815,805 - Xcc-8004.5074.1 0.35 +1.4
4,815,966 + Xcc-8004.5074.1 0.48 +0.3
4,815,966 + Xcc-8004.5074.1 0.48 +0.1
4,815,966 + Xcc-8004.5074.1 0.48 -2.7
4,815,966 + Xcc-8004.5074.1 0.48 +0.7
4,815,967 - Xcc-8004.5074.1 0.48 -0.2
4,815,967 - Xcc-8004.5074.1 0.48 -0.4
4,815,967 - Xcc-8004.5074.1 0.48 +2.5
4,816,132 + Xcc-8004.5074.1 0.62 -1.8
4,816,132 + Xcc-8004.5074.1 0.62 -2.3
4,816,132 + Xcc-8004.5074.1 0.62 -1.0
4,816,133 - Xcc-8004.5074.1 0.62 -0.5
4,816,133 - Xcc-8004.5074.1 0.62 +1.6
4,816,138 + Xcc-8004.5074.1 0.62 -2.7
4,816,138 + Xcc-8004.5074.1 0.62 +0.1
4,816,255 + Xcc-8004.5074.1 0.72 -1.3
4,816,255 + Xcc-8004.5074.1 0.72 -2.5
4,816,255 + Xcc-8004.5074.1 0.72 -0.3
4,816,256 - Xcc-8004.5074.1 0.72 +0.6
4,816,519 + -0.2
4,816,519 + +1.1
4,816,520 - +1.0
4,816,822 + Xcc-8004.5075.1 0.30 -1.9
4,816,822 + Xcc-8004.5075.1 0.30 -2.6
4,816,822 + Xcc-8004.5075.1 0.30 +1.1
4,816,860 + Xcc-8004.5075.1 0.35 -1.6
4,816,860 + Xcc-8004.5075.1 0.35 -1.0
4,816,860 + Xcc-8004.5075.1 0.35 -1.6
4,816,860 + Xcc-8004.5075.1 0.35 -0.6
4,816,860 + Xcc-8004.5075.1 0.35 +1.6
4,816,860 + Xcc-8004.5075.1 0.35 -2.0
4,816,860 + Xcc-8004.5075.1 0.35 -0.9
4,816,860 + Xcc-8004.5075.1 0.35 +0.0
4,816,860 + Xcc-8004.5075.1 0.35 -0.3
4,816,860 + Xcc-8004.5075.1 0.35 -0.7
4,816,861 - Xcc-8004.5075.1 0.35 +1.2
4,816,861 - Xcc-8004.5075.1 0.35 -1.7
4,816,861 - Xcc-8004.5075.1 0.35 -1.1
4,816,861 - Xcc-8004.5075.1 0.35 -3.1
4,816,861 - Xcc-8004.5075.1 0.35 +0.3
4,816,861 - Xcc-8004.5075.1 0.35 +0.3
4,816,861 - Xcc-8004.5075.1 0.35 +1.0
4,817,316 + -1.4
4,817,316 + -0.4
4,817,316 + -2.0
4,817,456 + Xcc-8004.5076.1 0.12 -1.5
4,817,456 + Xcc-8004.5076.1 0.12 -0.4
4,817,456 + Xcc-8004.5076.1 0.12 -0.1
4,817,456 + Xcc-8004.5076.1 0.12 -1.8
4,817,456 + Xcc-8004.5076.1 0.12 +1.9
4,817,456 + Xcc-8004.5076.1 0.12 -0.9
4,817,456 + Xcc-8004.5076.1 0.12 +0.4
4,817,456 + Xcc-8004.5076.1 0.12 +0.1
4,817,456 + Xcc-8004.5076.1 0.12 +0.9
4,817,456 + Xcc-8004.5076.1 0.12 +0.6
4,817,457 - Xcc-8004.5076.1 0.12 +1.9
4,817,457 - Xcc-8004.5076.1 0.12 +1.2
4,817,457 - Xcc-8004.5076.1 0.12 -0.2
4,817,457 - Xcc-8004.5076.1 0.12 +1.2
4,817,457 - Xcc-8004.5076.1 0.12 -0.7
4,817,457 - Xcc-8004.5076.1 0.12 -0.6

Or see this region's nucleotide sequence