Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4714.1 and Xcc-8004.4715.1 are separated by 170 nucleotides Xcc-8004.4715.1 and Xcc-8004.4716.1 are separated by 40 nucleotides Xcc-8004.4716.1 and Xcc-8004.4717.1 are separated by 21 nucleotides
Xcc-8004.4714.1: Xcc-8004.4714.1 - putative; ORF located using Glimmer/Genemark, at 4,491,579 to 4,492,151
Xcc-8004.4714.1
Xcc-8004.4715.1: Xcc-8004.4715.1 - FIG00353010: hypothetical protein, at 4,492,322 to 4,492,798
Xcc-8004.4715.1
Xcc-8004.4716.1: Xcc-8004.4716.1 - Transcriptional regulator, LysR family, at 4,492,839 to 4,492,982
Xcc-8004.4716.1
Xcc-8004.4717.1: Xcc-8004.4717.1 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 4,493,004 to 4,494,509
Xcc-8004.4717.1
Position (kb) 4492
4493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4491.842 kb on - strand, within Xcc-8004.4714.1 at 4491.842 kb on - strand, within Xcc-8004.4714.1 at 4492.006 kb on + strand, within Xcc-8004.4714.1 at 4492.006 kb on + strand, within Xcc-8004.4714.1 at 4492.006 kb on + strand, within Xcc-8004.4714.1 at 4492.006 kb on + strand, within Xcc-8004.4714.1 at 4492.007 kb on - strand, within Xcc-8004.4714.1 at 4492.007 kb on - strand, within Xcc-8004.4714.1 at 4492.007 kb on - strand, within Xcc-8004.4714.1 at 4492.007 kb on - strand, within Xcc-8004.4714.1 at 4492.007 kb on - strand, within Xcc-8004.4714.1 at 4492.007 kb on - strand, within Xcc-8004.4714.1 at 4492.030 kb on + strand, within Xcc-8004.4714.1 at 4492.030 kb on + strand, within Xcc-8004.4714.1 at 4492.090 kb on + strand, within Xcc-8004.4714.1 at 4492.091 kb on - strand, within Xcc-8004.4714.1 at 4492.091 kb on - strand, within Xcc-8004.4714.1 at 4492.091 kb on - strand, within Xcc-8004.4714.1 at 4492.091 kb on - strand, within Xcc-8004.4714.1 at 4492.091 kb on - strand, within Xcc-8004.4714.1 at 4492.215 kb on + strand at 4492.216 kb on - strand at 4492.280 kb on - strand at 4492.421 kb on + strand, within Xcc-8004.4715.1 at 4492.422 kb on - strand, within Xcc-8004.4715.1 at 4492.422 kb on - strand, within Xcc-8004.4715.1 at 4492.422 kb on - strand, within Xcc-8004.4715.1 at 4492.629 kb on - strand, within Xcc-8004.4715.1 at 4492.629 kb on - strand, within Xcc-8004.4715.1 at 4492.902 kb on + strand, within Xcc-8004.4716.1 at 4493.051 kb on - strand at 4493.113 kb on + strand at 4493.113 kb on + strand at 4493.113 kb on + strand at 4493.113 kb on + strand at 4493.113 kb on + strand at 4493.113 kb on + strand at 4493.113 kb on + strand at 4493.114 kb on - strand at 4493.117 kb on + strand at 4493.117 kb on + strand at 4493.117 kb on + strand at 4493.117 kb on + strand at 4493.117 kb on + strand at 4493.117 kb on + strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.118 kb on - strand at 4493.119 kb on + strand at 4493.119 kb on + strand at 4493.120 kb on - strand at 4493.187 kb on - strand, within Xcc-8004.4717.1 at 4493.244 kb on + strand, within Xcc-8004.4717.1 at 4493.360 kb on - strand, within Xcc-8004.4717.1 at 4493.360 kb on - strand, within Xcc-8004.4717.1 at 4493.362 kb on + strand, within Xcc-8004.4717.1 at 4493.363 kb on - strand, within Xcc-8004.4717.1 at 4493.371 kb on + strand, within Xcc-8004.4717.1 at 4493.528 kb on - strand, within Xcc-8004.4717.1 at 4493.569 kb on - strand, within Xcc-8004.4717.1 at 4493.582 kb on + strand, within Xcc-8004.4717.1 at 4493.653 kb on + strand, within Xcc-8004.4717.1 at 4493.695 kb on - strand, within Xcc-8004.4717.1 at 4493.725 kb on + strand, within Xcc-8004.4717.1 at 4493.731 kb on + strand, within Xcc-8004.4717.1 at 4493.731 kb on + strand, within Xcc-8004.4717.1 at 4493.732 kb on - strand, within Xcc-8004.4717.1 at 4493.732 kb on - strand, within Xcc-8004.4717.1 at 4493.735 kb on + strand, within Xcc-8004.4717.1 at 4493.735 kb on + strand, within Xcc-8004.4717.1 at 4493.735 kb on + strand, within Xcc-8004.4717.1 at 4493.735 kb on + strand, within Xcc-8004.4717.1 at 4493.736 kb on - strand, within Xcc-8004.4717.1 at 4493.797 kb on + strand, within Xcc-8004.4717.1 at 4493.797 kb on + strand, within Xcc-8004.4717.1 at 4493.798 kb on - strand, within Xcc-8004.4717.1 at 4493.929 kb on + strand, within Xcc-8004.4717.1 at 4493.930 kb on - strand, within Xcc-8004.4717.1 at 4493.937 kb on - strand, within Xcc-8004.4717.1 at 4493.945 kb on - strand, within Xcc-8004.4717.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 4,491,842 - Xcc-8004.4714.1 0.46 -0.1 4,491,842 - Xcc-8004.4714.1 0.46 +1.2 4,492,006 + Xcc-8004.4714.1 0.75 +1.3 4,492,006 + Xcc-8004.4714.1 0.75 +1.1 4,492,006 + Xcc-8004.4714.1 0.75 +1.9 4,492,006 + Xcc-8004.4714.1 0.75 +0.4 4,492,007 - Xcc-8004.4714.1 0.75 -0.5 4,492,007 - Xcc-8004.4714.1 0.75 -0.2 4,492,007 - Xcc-8004.4714.1 0.75 -0.1 4,492,007 - Xcc-8004.4714.1 0.75 -1.1 4,492,007 - Xcc-8004.4714.1 0.75 -1.3 4,492,007 - Xcc-8004.4714.1 0.75 -0.2 4,492,030 + Xcc-8004.4714.1 0.79 +1.0 4,492,030 + Xcc-8004.4714.1 0.79 -0.2 4,492,090 + Xcc-8004.4714.1 0.89 +1.0 4,492,091 - Xcc-8004.4714.1 0.89 +0.0 4,492,091 - Xcc-8004.4714.1 0.89 -0.9 4,492,091 - Xcc-8004.4714.1 0.89 +0.9 4,492,091 - Xcc-8004.4714.1 0.89 +0.9 4,492,091 - Xcc-8004.4714.1 0.89 +1.7 4,492,215 + +0.0 4,492,216 - +0.2 4,492,280 - +2.5 4,492,421 + Xcc-8004.4715.1 0.21 -0.4 4,492,422 - Xcc-8004.4715.1 0.21 +2.2 4,492,422 - Xcc-8004.4715.1 0.21 +0.7 4,492,422 - Xcc-8004.4715.1 0.21 -1.3 4,492,629 - Xcc-8004.4715.1 0.64 -0.7 4,492,629 - Xcc-8004.4715.1 0.64 -1.5 4,492,902 + Xcc-8004.4716.1 0.44 +0.3 4,493,051 - -1.1 4,493,113 + +0.7 4,493,113 + -0.2 4,493,113 + +1.0 4,493,113 + +1.0 4,493,113 + -0.6 4,493,113 + +0.8 4,493,113 + +2.0 4,493,114 - +0.1 4,493,117 + -1.1 4,493,117 + +1.1 4,493,117 + +1.4 4,493,117 + -0.6 4,493,117 + +0.2 4,493,117 + +0.4 4,493,118 - +0.5 4,493,118 - -0.5 4,493,118 - +0.3 4,493,118 - -2.9 4,493,118 - -0.9 4,493,118 - -0.2 4,493,118 - -0.5 4,493,118 - -0.5 4,493,118 - -1.6 4,493,118 - +1.4 4,493,118 - +0.2 4,493,118 - -0.1 4,493,118 - +0.0 4,493,118 - +0.2 4,493,118 - -0.6 4,493,118 - +0.1 4,493,119 + +1.1 4,493,119 + +2.0 4,493,120 - +0.2 4,493,187 - Xcc-8004.4717.1 0.12 +2.8 4,493,244 + Xcc-8004.4717.1 0.16 +1.6 4,493,360 - Xcc-8004.4717.1 0.24 +0.8 4,493,360 - Xcc-8004.4717.1 0.24 +0.0 4,493,362 + Xcc-8004.4717.1 0.24 +0.8 4,493,363 - Xcc-8004.4717.1 0.24 -2.3 4,493,371 + Xcc-8004.4717.1 0.24 -0.3 4,493,528 - Xcc-8004.4717.1 0.35 -2.5 4,493,569 - Xcc-8004.4717.1 0.38 -0.4 4,493,582 + Xcc-8004.4717.1 0.38 -1.0 4,493,653 + Xcc-8004.4717.1 0.43 +0.3 4,493,695 - Xcc-8004.4717.1 0.46 -0.5 4,493,725 + Xcc-8004.4717.1 0.48 -0.2 4,493,731 + Xcc-8004.4717.1 0.48 -2.1 4,493,731 + Xcc-8004.4717.1 0.48 +0.8 4,493,732 - Xcc-8004.4717.1 0.48 +0.5 4,493,732 - Xcc-8004.4717.1 0.48 -0.2 4,493,735 + Xcc-8004.4717.1 0.49 +0.3 4,493,735 + Xcc-8004.4717.1 0.49 -2.4 4,493,735 + Xcc-8004.4717.1 0.49 +0.4 4,493,735 + Xcc-8004.4717.1 0.49 +0.0 4,493,736 - Xcc-8004.4717.1 0.49 +0.9 4,493,797 + Xcc-8004.4717.1 0.53 +3.1 4,493,797 + Xcc-8004.4717.1 0.53 +0.7 4,493,798 - Xcc-8004.4717.1 0.53 -0.9 4,493,929 + Xcc-8004.4717.1 0.61 -0.2 4,493,930 - Xcc-8004.4717.1 0.61 +0.7 4,493,937 - Xcc-8004.4717.1 0.62 +0.8 4,493,945 - Xcc-8004.4717.1 0.62 +0.8
Or see this region's nucleotide sequence