Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4562.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4561.1 and Xcc-8004.4562.1 are separated by 44 nucleotidesXcc-8004.4562.1 and Xcc-8004.4563.1 overlap by 7 nucleotides Xcc-8004.4561.1: Xcc-8004.4561.1 - Sensor histidine kinase, at 4,357,590 to 4,358,831 Xcc-8004.4561.1 Xcc-8004.4562.1: Xcc-8004.4562.1 - Mobile element protein, at 4,358,876 to 4,359,139 Xcc-8004.4562.1 Xcc-8004.4563.1: Xcc-8004.4563.1 - Mobile element protein, at 4,359,133 to 4,359,978 Xcc-8004.4563.1 Position (kb) 4358 4359 4360Strain fitness (log2 ratio) -1 0 1 2at 4357.877 kb on - strand, within Xcc-8004.4561.1at 4358.199 kb on + strand, within Xcc-8004.4561.1at 4358.199 kb on + strand, within Xcc-8004.4561.1at 4358.200 kb on - strand, within Xcc-8004.4561.1at 4358.200 kb on - strand, within Xcc-8004.4561.1at 4358.796 kb on + strandat 4358.830 kb on - strandat 4360.035 kb on + strandat 4360.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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4,357,877 - Xcc-8004.4561.1 0.23 +1.8
4,358,199 + Xcc-8004.4561.1 0.49 +0.5
4,358,199 + Xcc-8004.4561.1 0.49 +2.5
4,358,200 - Xcc-8004.4561.1 0.49 +0.0
4,358,200 - Xcc-8004.4561.1 0.49 -0.1
4,358,796 + -0.2
4,358,830 - +0.0
4,360,035 + +2.0
4,360,035 + -1.6

Or see this region's nucleotide sequence