Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4418.1 and Xcc-8004.4419.1 are separated by 285 nucleotides Xcc-8004.4419.1 and Xcc-8004.4420.1 are separated by 437 nucleotides
Xcc-8004.4418.1: Xcc-8004.4418.1 - Transcriptional regulator, GntR family, at 4,228,077 to 4,228,805
Xcc-8004.4418.1
Xcc-8004.4419.1: Xcc-8004.4419.1 - Glycosyltransferase (EC 2.4.1.-), at 4,229,091 to 4,229,921
Xcc-8004.4419.1
Xcc-8004.4420.1: Xcc-8004.4420.1 - General secretion pathway protein D, at 4,230,359 to 4,232,638
Xcc-8004.4420.1
Position (kb) 4229
4230 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4228.252 kb on - strand, within Xcc-8004.4418.1 at 4228.252 kb on - strand, within Xcc-8004.4418.1 at 4228.252 kb on - strand, within Xcc-8004.4418.1 at 4228.332 kb on + strand, within Xcc-8004.4418.1 at 4228.332 kb on + strand, within Xcc-8004.4418.1 at 4228.332 kb on + strand, within Xcc-8004.4418.1 at 4228.333 kb on - strand, within Xcc-8004.4418.1 at 4228.333 kb on - strand, within Xcc-8004.4418.1 at 4228.333 kb on - strand, within Xcc-8004.4418.1 at 4228.333 kb on - strand, within Xcc-8004.4418.1 at 4228.333 kb on - strand, within Xcc-8004.4418.1 at 4228.404 kb on + strand, within Xcc-8004.4418.1 at 4228.405 kb on - strand, within Xcc-8004.4418.1 at 4228.905 kb on - strand at 4228.951 kb on + strand at 4228.965 kb on - strand at 4229.034 kb on + strand at 4229.035 kb on - strand at 4229.092 kb on + strand at 4229.092 kb on + strand at 4229.092 kb on + strand at 4229.092 kb on + strand at 4229.368 kb on + strand, within Xcc-8004.4419.1 at 4229.368 kb on + strand, within Xcc-8004.4419.1 at 4229.369 kb on - strand, within Xcc-8004.4419.1 at 4229.369 kb on - strand, within Xcc-8004.4419.1 at 4229.369 kb on - strand, within Xcc-8004.4419.1 at 4229.369 kb on - strand, within Xcc-8004.4419.1 at 4229.895 kb on + strand at 4229.895 kb on + strand at 4229.895 kb on + strand at 4229.895 kb on + strand at 4229.895 kb on + strand at 4229.896 kb on - strand at 4229.896 kb on - strand at 4229.896 kb on - strand at 4229.896 kb on - strand at 4229.896 kb on - strand at 4229.930 kb on - strand at 4229.930 kb on - strand at 4229.937 kb on + strand at 4229.957 kb on - strand at 4229.986 kb on + strand at 4229.987 kb on - strand at 4229.987 kb on - strand at 4229.987 kb on - strand at 4229.987 kb on - strand at 4229.991 kb on - strand at 4229.991 kb on - strand at 4229.991 kb on - strand at 4229.991 kb on - strand at 4230.021 kb on - strand at 4230.051 kb on + strand at 4230.052 kb on - strand at 4230.087 kb on + strand at 4230.088 kb on - strand at 4230.088 kb on - strand at 4230.089 kb on + strand at 4230.089 kb on + strand at 4230.089 kb on + strand at 4230.089 kb on + strand at 4230.089 kb on + strand at 4230.089 kb on + strand at 4230.089 kb on + strand at 4230.089 kb on + strand at 4230.089 kb on + strand at 4230.090 kb on - strand at 4230.090 kb on - strand at 4230.090 kb on - strand at 4230.090 kb on - strand at 4230.090 kb on - strand at 4230.090 kb on - strand at 4230.152 kb on + strand at 4230.152 kb on + strand at 4230.152 kb on + strand at 4230.152 kb on + strand at 4230.181 kb on + strand at 4230.186 kb on + strand at 4230.186 kb on + strand at 4230.187 kb on - strand at 4230.205 kb on + strand at 4230.205 kb on + strand at 4230.213 kb on + strand at 4230.213 kb on + strand at 4230.213 kb on + strand at 4230.214 kb on - strand at 4230.214 kb on - strand at 4230.215 kb on + strand at 4230.215 kb on + strand at 4230.215 kb on + strand at 4230.216 kb on - strand at 4230.216 kb on - strand at 4230.228 kb on - strand at 4230.228 kb on - strand at 4230.306 kb on - strand at 4230.306 kb on - strand at 4230.306 kb on - strand at 4230.342 kb on + strand at 4230.364 kb on + strand at 4230.365 kb on - strand at 4230.385 kb on + strand at 4230.386 kb on - strand at 4230.386 kb on - strand at 4230.406 kb on - strand at 4230.416 kb on + strand at 4230.417 kb on - strand at 4230.446 kb on + strand at 4230.469 kb on + strand at 4230.499 kb on + strand at 4230.499 kb on + strand at 4230.500 kb on - strand at 4230.500 kb on - strand at 4230.500 kb on - strand at 4230.532 kb on + strand at 4230.533 kb on - strand at 4230.546 kb on - strand at 4230.546 kb on - strand at 4230.553 kb on + strand at 4230.554 kb on - strand at 4230.554 kb on - strand at 4230.569 kb on - strand at 4230.569 kb on - strand at 4230.569 kb on - strand at 4230.682 kb on + strand, within Xcc-8004.4420.1 at 4230.682 kb on + strand, within Xcc-8004.4420.1 at 4230.682 kb on + strand, within Xcc-8004.4420.1 at 4230.683 kb on - strand, within Xcc-8004.4420.1 at 4230.724 kb on + strand, within Xcc-8004.4420.1 at 4230.724 kb on + strand, within Xcc-8004.4420.1 at 4230.724 kb on + strand, within Xcc-8004.4420.1 at 4230.724 kb on + strand, within Xcc-8004.4420.1 at 4230.725 kb on - strand, within Xcc-8004.4420.1 at 4230.725 kb on - strand, within Xcc-8004.4420.1 at 4230.725 kb on - strand, within Xcc-8004.4420.1 at 4230.728 kb on - strand, within Xcc-8004.4420.1 at 4230.728 kb on - strand, within Xcc-8004.4420.1 at 4230.728 kb on - strand, within Xcc-8004.4420.1 at 4230.743 kb on - strand, within Xcc-8004.4420.1 at 4230.789 kb on - strand, within Xcc-8004.4420.1 at 4230.806 kb on + strand, within Xcc-8004.4420.1 at 4230.806 kb on + strand, within Xcc-8004.4420.1 at 4230.806 kb on + strand, within Xcc-8004.4420.1 at 4230.806 kb on + strand, within Xcc-8004.4420.1 at 4230.807 kb on - strand, within Xcc-8004.4420.1 at 4230.807 kb on - strand, within Xcc-8004.4420.1 at 4230.807 kb on - strand, within Xcc-8004.4420.1 at 4230.807 kb on - strand, within Xcc-8004.4420.1 at 4230.810 kb on + strand, within Xcc-8004.4420.1 at 4230.810 kb on + strand, within Xcc-8004.4420.1 at 4230.811 kb on - strand, within Xcc-8004.4420.1 at 4230.811 kb on - strand, within Xcc-8004.4420.1 at 4230.833 kb on - strand, within Xcc-8004.4420.1 at 4230.870 kb on - strand, within Xcc-8004.4420.1 at 4230.913 kb on + strand, within Xcc-8004.4420.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 4,228,252 - Xcc-8004.4418.1 0.24 +1.8 4,228,252 - Xcc-8004.4418.1 0.24 -1.8 4,228,252 - Xcc-8004.4418.1 0.24 -1.6 4,228,332 + Xcc-8004.4418.1 0.35 -1.2 4,228,332 + Xcc-8004.4418.1 0.35 -1.3 4,228,332 + Xcc-8004.4418.1 0.35 +0.7 4,228,333 - Xcc-8004.4418.1 0.35 +0.1 4,228,333 - Xcc-8004.4418.1 0.35 -1.4 4,228,333 - Xcc-8004.4418.1 0.35 -1.5 4,228,333 - Xcc-8004.4418.1 0.35 -0.7 4,228,333 - Xcc-8004.4418.1 0.35 -0.2 4,228,404 + Xcc-8004.4418.1 0.45 -0.9 4,228,405 - Xcc-8004.4418.1 0.45 -1.9 4,228,905 - -3.2 4,228,951 + +0.1 4,228,965 - +4.1 4,229,034 + -0.8 4,229,035 - +0.2 4,229,092 + +1.1 4,229,092 + +0.7 4,229,092 + +0.9 4,229,092 + +1.3 4,229,368 + Xcc-8004.4419.1 0.33 +1.2 4,229,368 + Xcc-8004.4419.1 0.33 +0.6 4,229,369 - Xcc-8004.4419.1 0.33 +1.4 4,229,369 - Xcc-8004.4419.1 0.33 -0.3 4,229,369 - Xcc-8004.4419.1 0.33 +0.2 4,229,369 - Xcc-8004.4419.1 0.33 -2.3 4,229,895 + -2.7 4,229,895 + -0.4 4,229,895 + -0.5 4,229,895 + +0.3 4,229,895 + -1.7 4,229,896 - +0.1 4,229,896 - -0.9 4,229,896 - -1.2 4,229,896 - -0.8 4,229,896 - -0.8 4,229,930 - -1.3 4,229,930 - -0.3 4,229,937 + +1.0 4,229,957 - +0.4 4,229,986 + +0.8 4,229,987 - -0.4 4,229,987 - -1.7 4,229,987 - +0.5 4,229,987 - -0.2 4,229,991 - +0.2 4,229,991 - +0.1 4,229,991 - -0.3 4,229,991 - -0.5 4,230,021 - +3.8 4,230,051 + -0.7 4,230,052 - +0.6 4,230,087 + -1.6 4,230,088 - -0.5 4,230,088 - -0.8 4,230,089 + +1.4 4,230,089 + +2.0 4,230,089 + +1.8 4,230,089 + +0.1 4,230,089 + +1.6 4,230,089 + +0.6 4,230,089 + +2.5 4,230,089 + -0.4 4,230,089 + +1.1 4,230,090 - -0.3 4,230,090 - +0.7 4,230,090 - +0.1 4,230,090 - +1.0 4,230,090 - -1.8 4,230,090 - +1.0 4,230,152 + +1.4 4,230,152 + -1.6 4,230,152 + +0.1 4,230,152 + +0.5 4,230,181 + +0.4 4,230,186 + +0.8 4,230,186 + -0.6 4,230,187 - +0.9 4,230,205 + +0.8 4,230,205 + -0.0 4,230,213 + +0.3 4,230,213 + -0.7 4,230,213 + -1.5 4,230,214 - +0.5 4,230,214 - +0.0 4,230,215 + -0.0 4,230,215 + +1.0 4,230,215 + +1.8 4,230,216 - -0.9 4,230,216 - -0.3 4,230,228 - -1.1 4,230,228 - -0.3 4,230,306 - -0.6 4,230,306 - -0.5 4,230,306 - +0.7 4,230,342 + -0.2 4,230,364 + -1.0 4,230,365 - -0.8 4,230,385 + +1.3 4,230,386 - +1.9 4,230,386 - -1.3 4,230,406 - -0.7 4,230,416 + -1.1 4,230,417 - +0.3 4,230,446 + +0.3 4,230,469 + +0.4 4,230,499 + -0.3 4,230,499 + +1.0 4,230,500 - -0.2 4,230,500 - -1.9 4,230,500 - -4.0 4,230,532 + -1.4 4,230,533 - -2.7 4,230,546 - +0.4 4,230,546 - -1.9 4,230,553 + +2.8 4,230,554 - -0.5 4,230,554 - -1.2 4,230,569 - +1.3 4,230,569 - +0.7 4,230,569 - -0.9 4,230,682 + Xcc-8004.4420.1 0.14 -0.2 4,230,682 + Xcc-8004.4420.1 0.14 +2.0 4,230,682 + Xcc-8004.4420.1 0.14 +1.4 4,230,683 - Xcc-8004.4420.1 0.14 +0.2 4,230,724 + Xcc-8004.4420.1 0.16 -1.9 4,230,724 + Xcc-8004.4420.1 0.16 -1.2 4,230,724 + Xcc-8004.4420.1 0.16 +0.0 4,230,724 + Xcc-8004.4420.1 0.16 -0.1 4,230,725 - Xcc-8004.4420.1 0.16 +0.1 4,230,725 - Xcc-8004.4420.1 0.16 -0.8 4,230,725 - Xcc-8004.4420.1 0.16 +1.5 4,230,728 - Xcc-8004.4420.1 0.16 -0.2 4,230,728 - Xcc-8004.4420.1 0.16 -0.9 4,230,728 - Xcc-8004.4420.1 0.16 +0.0 4,230,743 - Xcc-8004.4420.1 0.17 +0.7 4,230,789 - Xcc-8004.4420.1 0.19 -0.4 4,230,806 + Xcc-8004.4420.1 0.20 +1.0 4,230,806 + Xcc-8004.4420.1 0.20 -2.1 4,230,806 + Xcc-8004.4420.1 0.20 -1.0 4,230,806 + Xcc-8004.4420.1 0.20 -0.5 4,230,807 - Xcc-8004.4420.1 0.20 +0.2 4,230,807 - Xcc-8004.4420.1 0.20 -1.2 4,230,807 - Xcc-8004.4420.1 0.20 +0.7 4,230,807 - Xcc-8004.4420.1 0.20 -0.6 4,230,810 + Xcc-8004.4420.1 0.20 -0.3 4,230,810 + Xcc-8004.4420.1 0.20 -0.5 4,230,811 - Xcc-8004.4420.1 0.20 +0.0 4,230,811 - Xcc-8004.4420.1 0.20 -1.0 4,230,833 - Xcc-8004.4420.1 0.21 +0.1 4,230,870 - Xcc-8004.4420.1 0.22 +1.6 4,230,913 + Xcc-8004.4420.1 0.24 -2.7
Or see this region's nucleotide sequence