Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4022.1 and Xcc-8004.4023.1 overlap by 1 nucleotides Xcc-8004.4023.1 and Xcc-8004.4024.1 overlap by 1 nucleotides Xcc-8004.4024.1 and Xcc-8004.4025.1 are separated by 20 nucleotides
Xcc-8004.4022.1: Xcc-8004.4022.1 - Molybdenum cofactor biosynthesis protein MoaA, at 3,892,077 to 3,893,108
Xcc-8004.4022.1
Xcc-8004.4023.1: Xcc-8004.4023.1 - FIG01209934: hypothetical protein, at 3,893,108 to 3,893,860
Xcc-8004.4023.1
Xcc-8004.4024.1: Xcc-8004.4024.1 - 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-), at 3,893,860 to 3,894,609
Xcc-8004.4024.1
Xcc-8004.4025.1: Xcc-8004.4025.1 - ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-), at 3,894,630 to 3,895,676
Xcc-8004.4025.1
Position (kb) 3893
3894 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3892.143 kb on - strand at 3892.143 kb on - strand at 3892.143 kb on - strand at 3892.143 kb on - strand at 3892.144 kb on + strand at 3892.144 kb on + strand at 3892.145 kb on - strand at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.255 kb on + strand, within Xcc-8004.4022.1 at 3892.256 kb on - strand, within Xcc-8004.4022.1 at 3892.256 kb on - strand, within Xcc-8004.4022.1 at 3892.256 kb on - strand, within Xcc-8004.4022.1 at 3892.256 kb on - strand, within Xcc-8004.4022.1 at 3892.256 kb on - strand, within Xcc-8004.4022.1 at 3892.256 kb on - strand, within Xcc-8004.4022.1 at 3892.256 kb on - strand, within Xcc-8004.4022.1 at 3892.256 kb on - strand, within Xcc-8004.4022.1 at 3892.256 kb on - strand, within Xcc-8004.4022.1 at 3892.256 kb on - strand, within Xcc-8004.4022.1 at 3892.384 kb on + strand, within Xcc-8004.4022.1 at 3892.384 kb on + strand, within Xcc-8004.4022.1 at 3892.384 kb on + strand, within Xcc-8004.4022.1 at 3892.384 kb on + strand, within Xcc-8004.4022.1 at 3892.384 kb on + strand, within Xcc-8004.4022.1 at 3892.384 kb on + strand, within Xcc-8004.4022.1 at 3892.384 kb on + strand, within Xcc-8004.4022.1 at 3892.384 kb on + strand, within Xcc-8004.4022.1 at 3892.384 kb on + strand, within Xcc-8004.4022.1 at 3892.385 kb on - strand, within Xcc-8004.4022.1 at 3892.385 kb on - strand, within Xcc-8004.4022.1 at 3892.385 kb on - strand, within Xcc-8004.4022.1 at 3892.385 kb on - strand, within Xcc-8004.4022.1 at 3892.385 kb on - strand, within Xcc-8004.4022.1 at 3892.385 kb on - strand, within Xcc-8004.4022.1 at 3892.385 kb on - strand, within Xcc-8004.4022.1 at 3892.385 kb on - strand, within Xcc-8004.4022.1 at 3892.385 kb on - strand, within Xcc-8004.4022.1 at 3892.961 kb on - strand, within Xcc-8004.4022.1 at 3892.993 kb on + strand, within Xcc-8004.4022.1 at 3893.864 kb on + strand at 3893.865 kb on - strand at 3893.889 kb on - strand at 3893.909 kb on + strand at 3893.909 kb on + strand at 3893.910 kb on - strand at 3894.010 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.249 kb on - strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.353 kb on + strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.354 kb on - strand, within Xcc-8004.4024.1 at 3894.543 kb on + strand at 3894.620 kb on + strand at 3894.620 kb on + strand at 3894.620 kb on + strand at 3894.620 kb on + strand at 3894.621 kb on - strand at 3894.621 kb on - strand at 3894.621 kb on - strand at 3894.621 kb on - strand at 3894.638 kb on + strand at 3894.638 kb on + strand at 3894.639 kb on - strand at 3894.652 kb on + strand at 3894.653 kb on - strand at 3894.653 kb on - strand at 3894.810 kb on + strand, within Xcc-8004.4025.1 at 3894.811 kb on - strand, within Xcc-8004.4025.1 at 3894.811 kb on - strand, within Xcc-8004.4025.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 3,892,143 - -0.9 3,892,143 - -0.9 3,892,143 - -1.2 3,892,143 - -1.3 3,892,144 + +0.8 3,892,144 + +1.1 3,892,145 - -0.1 3,892,255 + Xcc-8004.4022.1 0.17 -0.2 3,892,255 + Xcc-8004.4022.1 0.17 -0.3 3,892,255 + Xcc-8004.4022.1 0.17 -1.4 3,892,255 + Xcc-8004.4022.1 0.17 -2.8 3,892,255 + Xcc-8004.4022.1 0.17 +0.9 3,892,255 + Xcc-8004.4022.1 0.17 -1.9 3,892,255 + Xcc-8004.4022.1 0.17 -0.1 3,892,255 + Xcc-8004.4022.1 0.17 +0.4 3,892,255 + Xcc-8004.4022.1 0.17 -1.3 3,892,255 + Xcc-8004.4022.1 0.17 +0.4 3,892,255 + Xcc-8004.4022.1 0.17 +0.3 3,892,255 + Xcc-8004.4022.1 0.17 -0.3 3,892,255 + Xcc-8004.4022.1 0.17 +1.7 3,892,256 - Xcc-8004.4022.1 0.17 +0.1 3,892,256 - Xcc-8004.4022.1 0.17 +0.2 3,892,256 - Xcc-8004.4022.1 0.17 +0.8 3,892,256 - Xcc-8004.4022.1 0.17 +0.2 3,892,256 - Xcc-8004.4022.1 0.17 +0.6 3,892,256 - Xcc-8004.4022.1 0.17 -1.9 3,892,256 - Xcc-8004.4022.1 0.17 -1.1 3,892,256 - Xcc-8004.4022.1 0.17 -0.1 3,892,256 - Xcc-8004.4022.1 0.17 +0.1 3,892,256 - Xcc-8004.4022.1 0.17 -1.3 3,892,384 + Xcc-8004.4022.1 0.30 -1.7 3,892,384 + Xcc-8004.4022.1 0.30 +1.1 3,892,384 + Xcc-8004.4022.1 0.30 -1.2 3,892,384 + Xcc-8004.4022.1 0.30 -1.2 3,892,384 + Xcc-8004.4022.1 0.30 -0.4 3,892,384 + Xcc-8004.4022.1 0.30 -0.8 3,892,384 + Xcc-8004.4022.1 0.30 -0.9 3,892,384 + Xcc-8004.4022.1 0.30 -0.6 3,892,384 + Xcc-8004.4022.1 0.30 +1.4 3,892,385 - Xcc-8004.4022.1 0.30 -1.6 3,892,385 - Xcc-8004.4022.1 0.30 -0.2 3,892,385 - Xcc-8004.4022.1 0.30 -0.8 3,892,385 - Xcc-8004.4022.1 0.30 -0.8 3,892,385 - Xcc-8004.4022.1 0.30 -1.4 3,892,385 - Xcc-8004.4022.1 0.30 -0.0 3,892,385 - Xcc-8004.4022.1 0.30 -0.8 3,892,385 - Xcc-8004.4022.1 0.30 -1.2 3,892,385 - Xcc-8004.4022.1 0.30 -0.5 3,892,961 - Xcc-8004.4022.1 0.86 -0.1 3,892,993 + Xcc-8004.4022.1 0.89 +1.4 3,893,864 + -0.3 3,893,865 - -2.0 3,893,889 - -3.0 3,893,909 + -1.8 3,893,909 + +1.2 3,893,910 - -0.2 3,894,010 - Xcc-8004.4024.1 0.20 -1.3 3,894,249 - Xcc-8004.4024.1 0.52 -0.8 3,894,249 - Xcc-8004.4024.1 0.52 -0.4 3,894,249 - Xcc-8004.4024.1 0.52 -0.5 3,894,249 - Xcc-8004.4024.1 0.52 -0.6 3,894,249 - Xcc-8004.4024.1 0.52 -1.1 3,894,249 - Xcc-8004.4024.1 0.52 -0.8 3,894,249 - Xcc-8004.4024.1 0.52 -1.2 3,894,353 + Xcc-8004.4024.1 0.66 -0.6 3,894,353 + Xcc-8004.4024.1 0.66 -2.7 3,894,353 + Xcc-8004.4024.1 0.66 +0.0 3,894,353 + Xcc-8004.4024.1 0.66 -0.1 3,894,353 + Xcc-8004.4024.1 0.66 -0.1 3,894,353 + Xcc-8004.4024.1 0.66 -0.8 3,894,353 + Xcc-8004.4024.1 0.66 -1.0 3,894,353 + Xcc-8004.4024.1 0.66 +0.4 3,894,354 - Xcc-8004.4024.1 0.66 -3.1 3,894,354 - Xcc-8004.4024.1 0.66 -1.1 3,894,354 - Xcc-8004.4024.1 0.66 -0.5 3,894,354 - Xcc-8004.4024.1 0.66 -2.4 3,894,354 - Xcc-8004.4024.1 0.66 +0.0 3,894,354 - Xcc-8004.4024.1 0.66 -0.6 3,894,543 + +0.0 3,894,620 + +0.4 3,894,620 + -1.6 3,894,620 + +0.5 3,894,620 + +1.6 3,894,621 - +0.9 3,894,621 - -0.9 3,894,621 - -2.6 3,894,621 - +1.0 3,894,638 + -2.6 3,894,638 + -1.8 3,894,639 - +0.1 3,894,652 + +1.5 3,894,653 - +0.1 3,894,653 - +0.4 3,894,810 + Xcc-8004.4025.1 0.17 -1.0 3,894,811 - Xcc-8004.4025.1 0.17 +0.2 3,894,811 - Xcc-8004.4025.1 0.17 -2.9
Or see this region's nucleotide sequence