Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3943.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3941.1 and Xcc-8004.3942.1 are separated by 40 nucleotidesXcc-8004.3942.1 and Xcc-8004.3943.1 are separated by 5 nucleotidesXcc-8004.3943.1 and Xcc-8004.3944.1 are separated by 95 nucleotidesXcc-8004.3944.1 and Xcc-8004.3945.1 overlap by 11 nucleotides Xcc-8004.3941.1: Xcc-8004.3941.1 - putative restriction endonuclease, at 3,817,412 to 3,818,302 Xcc-8004.3941.1 Xcc-8004.3942.1: Xcc-8004.3942.1 - RelE/StbE replicon stabilization toxin, at 3,818,343 to 3,818,651 Xcc-8004.3942.1 Xcc-8004.3943.1: Xcc-8004.3943.1 - FIG01211223: hypothetical protein, at 3,818,657 to 3,818,920 Xcc-8004.3943.1 Xcc-8004.3944.1: Xcc-8004.3944.1 - FIG01210716: hypothetical protein, at 3,819,016 to 3,819,702 Xcc-8004.3944.1 Xcc-8004.3945.1: Xcc-8004.3945.1 - FIG01209841: hypothetical protein, at 3,819,692 to 3,820,222 Xcc-8004.3945.1 Position (kb) 3818 3819Strain fitness (log2 ratio) -2 -1 0 1 2at 3817.785 kb on + strand, within Xcc-8004.3941.1at 3817.785 kb on + strand, within Xcc-8004.3941.1at 3817.851 kb on + strand, within Xcc-8004.3941.1at 3817.851 kb on + strand, within Xcc-8004.3941.1at 3817.980 kb on + strand, within Xcc-8004.3941.1at 3817.981 kb on - strand, within Xcc-8004.3941.1at 3818.177 kb on - strand, within Xcc-8004.3941.1at 3818.248 kb on + strandat 3818.304 kb on + strandat 3818.304 kb on + strandat 3818.304 kb on + strandat 3818.304 kb on + strandat 3818.304 kb on + strandat 3818.305 kb on - strandat 3818.305 kb on - strandat 3818.305 kb on - strandat 3818.305 kb on - strandat 3818.345 kb on - strandat 3818.345 kb on - strandat 3818.345 kb on - strandat 3818.350 kb on + strandat 3818.351 kb on - strandat 3818.583 kb on + strand, within Xcc-8004.3942.1at 3818.584 kb on - strand, within Xcc-8004.3942.1at 3818.721 kb on + strand, within Xcc-8004.3943.1at 3819.017 kb on + strandat 3819.018 kb on - strandat 3819.018 kb on - strandat 3819.018 kb on - strandat 3819.038 kb on - strandat 3819.118 kb on + strand, within Xcc-8004.3944.1at 3819.119 kb on - strand, within Xcc-8004.3944.1at 3819.223 kb on + strand, within Xcc-8004.3944.1at 3819.368 kb on + strand, within Xcc-8004.3944.1at 3819.369 kb on - strand, within Xcc-8004.3944.1at 3819.369 kb on - strand, within Xcc-8004.3944.1at 3819.443 kb on - strand, within Xcc-8004.3944.1at 3819.498 kb on + strand, within Xcc-8004.3944.1at 3819.499 kb on - strand, within Xcc-8004.3944.1at 3819.557 kb on + strand, within Xcc-8004.3944.1at 3819.557 kb on + strand, within Xcc-8004.3944.1at 3819.557 kb on + strand, within Xcc-8004.3944.1at 3819.557 kb on + strand, within Xcc-8004.3944.1at 3819.558 kb on - strand, within Xcc-8004.3944.1at 3819.558 kb on - strand, within Xcc-8004.3944.1at 3819.628 kb on + strand, within Xcc-8004.3944.1at 3819.628 kb on + strand, within Xcc-8004.3944.1at 3819.629 kb on - strand, within Xcc-8004.3944.1at 3819.629 kb on - strand, within Xcc-8004.3944.1at 3819.629 kb on - strand, within Xcc-8004.3944.1at 3819.629 kb on - strand, within Xcc-8004.3944.1at 3819.629 kb on - strand, within Xcc-8004.3944.1at 3819.629 kb on - strand, within Xcc-8004.3944.1at 3819.629 kb on - strand, within Xcc-8004.3944.1at 3819.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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3,817,785 + Xcc-8004.3941.1 0.42 -1.3
3,817,785 + Xcc-8004.3941.1 0.42 +0.1
3,817,851 + Xcc-8004.3941.1 0.49 -0.0
3,817,851 + Xcc-8004.3941.1 0.49 +1.6
3,817,980 + Xcc-8004.3941.1 0.64 +0.9
3,817,981 - Xcc-8004.3941.1 0.64 +0.9
3,818,177 - Xcc-8004.3941.1 0.86 -1.1
3,818,248 + +0.4
3,818,304 + -0.6
3,818,304 + -0.3
3,818,304 + -1.5
3,818,304 + -0.8
3,818,304 + +0.4
3,818,305 - +0.1
3,818,305 - +0.6
3,818,305 - -1.5
3,818,305 - +0.4
3,818,345 - -0.7
3,818,345 - -1.7
3,818,345 - -2.6
3,818,350 + +1.6
3,818,351 - +0.1
3,818,583 + Xcc-8004.3942.1 0.78 +1.0
3,818,584 - Xcc-8004.3942.1 0.78 -1.9
3,818,721 + Xcc-8004.3943.1 0.24 -2.4
3,819,017 + -2.7
3,819,018 - -0.1
3,819,018 - -1.1
3,819,018 - +0.9
3,819,038 - -0.4
3,819,118 + Xcc-8004.3944.1 0.15 +0.8
3,819,119 - Xcc-8004.3944.1 0.15 +0.7
3,819,223 + Xcc-8004.3944.1 0.30 -0.3
3,819,368 + Xcc-8004.3944.1 0.51 +0.3
3,819,369 - Xcc-8004.3944.1 0.51 -1.1
3,819,369 - Xcc-8004.3944.1 0.51 -0.1
3,819,443 - Xcc-8004.3944.1 0.62 -2.3
3,819,498 + Xcc-8004.3944.1 0.70 -0.3
3,819,499 - Xcc-8004.3944.1 0.70 +0.8
3,819,557 + Xcc-8004.3944.1 0.79 +0.1
3,819,557 + Xcc-8004.3944.1 0.79 +0.7
3,819,557 + Xcc-8004.3944.1 0.79 -0.3
3,819,557 + Xcc-8004.3944.1 0.79 +1.1
3,819,558 - Xcc-8004.3944.1 0.79 +0.0
3,819,558 - Xcc-8004.3944.1 0.79 -0.3
3,819,628 + Xcc-8004.3944.1 0.89 +0.0
3,819,628 + Xcc-8004.3944.1 0.89 -0.6
3,819,629 - Xcc-8004.3944.1 0.89 -0.2
3,819,629 - Xcc-8004.3944.1 0.89 -0.2
3,819,629 - Xcc-8004.3944.1 0.89 -0.3
3,819,629 - Xcc-8004.3944.1 0.89 +0.2
3,819,629 - Xcc-8004.3944.1 0.89 +0.2
3,819,629 - Xcc-8004.3944.1 0.89 -0.1
3,819,629 - Xcc-8004.3944.1 0.89 -1.1
3,819,685 - +2.6

Or see this region's nucleotide sequence