Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3889.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3887.1 and Xcc-8004.3888.1 are separated by 116 nucleotidesXcc-8004.3888.1 and Xcc-8004.3889.1 are separated by 254 nucleotidesXcc-8004.3889.1 and Xcc-8004.3891.1 are separated by 204 nucleotides Xcc-8004.3887.1: Xcc-8004.3887.1 - hypothetical protein, at 3,754,223 to 3,754,948 Xcc-8004.3887.1 Xcc-8004.3888.1: Xcc-8004.3888.1 - FIG01210089: hypothetical protein, at 3,755,065 to 3,755,574 Xcc-8004.3888.1 Xcc-8004.3889.1: Xcc-8004.3889.1 - FIG01210587: hypothetical protein, at 3,755,829 to 3,756,233 Xcc-8004.3889.1 Xcc-8004.3891.1: Xcc-8004.3891.1 - alanyl dipeptidyl peptidase, at 3,756,438 to 3,758,555 Xcc-8004.3891.1 Position (kb) 3755 3756 3757Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3754.858 kb on + strand, within Xcc-8004.3887.1at 3754.858 kb on + strand, within Xcc-8004.3887.1at 3754.858 kb on + strand, within Xcc-8004.3887.1at 3754.860 kb on + strand, within Xcc-8004.3887.1at 3754.861 kb on - strand, within Xcc-8004.3887.1at 3755.034 kb on - strandat 3755.034 kb on - strandat 3755.369 kb on + strand, within Xcc-8004.3888.1at 3755.370 kb on - strand, within Xcc-8004.3888.1at 3755.548 kb on + strandat 3755.549 kb on - strandat 3755.674 kb on + strandat 3755.674 kb on + strandat 3755.675 kb on - strandat 3755.709 kb on + strandat 3755.710 kb on - strandat 3755.813 kb on - strandat 3755.853 kb on + strandat 3755.853 kb on + strandat 3755.854 kb on - strandat 3755.854 kb on - strandat 3756.102 kb on + strand, within Xcc-8004.3889.1at 3756.102 kb on + strand, within Xcc-8004.3889.1at 3756.103 kb on - strand, within Xcc-8004.3889.1at 3756.103 kb on - strand, within Xcc-8004.3889.1at 3756.103 kb on - strand, within Xcc-8004.3889.1at 3756.106 kb on + strand, within Xcc-8004.3889.1at 3756.107 kb on - strand, within Xcc-8004.3889.1at 3756.114 kb on + strand, within Xcc-8004.3889.1at 3756.160 kb on - strand, within Xcc-8004.3889.1at 3756.232 kb on - strandat 3756.232 kb on - strandat 3756.232 kb on - strandat 3756.232 kb on - strandat 3756.242 kb on - strandat 3756.535 kb on + strandat 3756.685 kb on + strand, within Xcc-8004.3891.1at 3756.685 kb on + strand, within Xcc-8004.3891.1at 3756.754 kb on + strand, within Xcc-8004.3891.1at 3756.754 kb on + strand, within Xcc-8004.3891.1at 3756.755 kb on - strand, within Xcc-8004.3891.1at 3756.835 kb on + strand, within Xcc-8004.3891.1at 3756.835 kb on + strand, within Xcc-8004.3891.1at 3756.835 kb on + strand, within Xcc-8004.3891.1at 3756.844 kb on + strand, within Xcc-8004.3891.1at 3756.844 kb on + strand, within Xcc-8004.3891.1at 3756.845 kb on - strand, within Xcc-8004.3891.1at 3757.030 kb on + strand, within Xcc-8004.3891.1at 3757.031 kb on - strand, within Xcc-8004.3891.1at 3757.046 kb on - strand, within Xcc-8004.3891.1at 3757.127 kb on - strand, within Xcc-8004.3891.1at 3757.144 kb on + strand, within Xcc-8004.3891.1at 3757.144 kb on + strand, within Xcc-8004.3891.1at 3757.144 kb on + strand, within Xcc-8004.3891.1at 3757.144 kb on + strand, within Xcc-8004.3891.1at 3757.144 kb on + strand, within Xcc-8004.3891.1at 3757.144 kb on + strand, within Xcc-8004.3891.1at 3757.144 kb on + strand, within Xcc-8004.3891.1at 3757.145 kb on - strand, within Xcc-8004.3891.1at 3757.145 kb on - strand, within Xcc-8004.3891.1at 3757.145 kb on - strand, within Xcc-8004.3891.1at 3757.145 kb on - strand, within Xcc-8004.3891.1at 3757.150 kb on + strand, within Xcc-8004.3891.1at 3757.165 kb on + strand, within Xcc-8004.3891.1at 3757.165 kb on + strand, within Xcc-8004.3891.1at 3757.166 kb on - strand, within Xcc-8004.3891.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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3,754,858 + Xcc-8004.3887.1 0.87 -0.6
3,754,858 + Xcc-8004.3887.1 0.87 +0.8
3,754,858 + Xcc-8004.3887.1 0.87 -0.8
3,754,860 + Xcc-8004.3887.1 0.88 -1.3
3,754,861 - Xcc-8004.3887.1 0.88 -0.0
3,755,034 - +0.7
3,755,034 - +1.1
3,755,369 + Xcc-8004.3888.1 0.60 -0.6
3,755,370 - Xcc-8004.3888.1 0.60 -0.5
3,755,548 + +2.2
3,755,549 - -0.3
3,755,674 + +0.4
3,755,674 + +0.2
3,755,675 - +1.4
3,755,709 + +0.1
3,755,710 - +0.3
3,755,813 - +1.2
3,755,853 + -0.3
3,755,853 + +0.8
3,755,854 - -2.6
3,755,854 - -0.5
3,756,102 + Xcc-8004.3889.1 0.67 +0.5
3,756,102 + Xcc-8004.3889.1 0.67 -0.2
3,756,103 - Xcc-8004.3889.1 0.68 -0.4
3,756,103 - Xcc-8004.3889.1 0.68 +0.3
3,756,103 - Xcc-8004.3889.1 0.68 -1.5
3,756,106 + Xcc-8004.3889.1 0.68 -1.5
3,756,107 - Xcc-8004.3889.1 0.69 +2.0
3,756,114 + Xcc-8004.3889.1 0.70 -0.8
3,756,160 - Xcc-8004.3889.1 0.82 -0.1
3,756,232 - +0.1
3,756,232 - +0.1
3,756,232 - +1.3
3,756,232 - +0.7
3,756,242 - +0.7
3,756,535 + +0.9
3,756,685 + Xcc-8004.3891.1 0.12 +0.2
3,756,685 + Xcc-8004.3891.1 0.12 -2.6
3,756,754 + Xcc-8004.3891.1 0.15 -1.8
3,756,754 + Xcc-8004.3891.1 0.15 -0.6
3,756,755 - Xcc-8004.3891.1 0.15 +0.4
3,756,835 + Xcc-8004.3891.1 0.19 -0.1
3,756,835 + Xcc-8004.3891.1 0.19 -0.2
3,756,835 + Xcc-8004.3891.1 0.19 -0.4
3,756,844 + Xcc-8004.3891.1 0.19 -1.2
3,756,844 + Xcc-8004.3891.1 0.19 -2.7
3,756,845 - Xcc-8004.3891.1 0.19 +0.2
3,757,030 + Xcc-8004.3891.1 0.28 +0.4
3,757,031 - Xcc-8004.3891.1 0.28 +0.0
3,757,046 - Xcc-8004.3891.1 0.29 -0.6
3,757,127 - Xcc-8004.3891.1 0.33 +0.1
3,757,144 + Xcc-8004.3891.1 0.33 +0.1
3,757,144 + Xcc-8004.3891.1 0.33 -0.5
3,757,144 + Xcc-8004.3891.1 0.33 +0.8
3,757,144 + Xcc-8004.3891.1 0.33 +1.0
3,757,144 + Xcc-8004.3891.1 0.33 +0.8
3,757,144 + Xcc-8004.3891.1 0.33 -0.7
3,757,144 + Xcc-8004.3891.1 0.33 -1.8
3,757,145 - Xcc-8004.3891.1 0.33 -1.2
3,757,145 - Xcc-8004.3891.1 0.33 +1.7
3,757,145 - Xcc-8004.3891.1 0.33 -1.4
3,757,145 - Xcc-8004.3891.1 0.33 +0.3
3,757,150 + Xcc-8004.3891.1 0.34 -0.7
3,757,165 + Xcc-8004.3891.1 0.34 +1.4
3,757,165 + Xcc-8004.3891.1 0.34 +0.1
3,757,166 - Xcc-8004.3891.1 0.34 -3.5

Or see this region's nucleotide sequence