Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3156.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3154.1 and Xcc-8004.3155.1 are separated by 9 nucleotidesXcc-8004.3155.1 and Xcc-8004.3156.1 are separated by 273 nucleotidesXcc-8004.3156.1 and Xcc-8004.3157.1 overlap by 17 nucleotidesXcc-8004.3157.1 and Xcc-8004.3158.1 are separated by 31 nucleotides Xcc-8004.3154.1: Xcc-8004.3154.1 - Probable low-affinity inorganic phosphate transporter, at 3,071,928 to 3,073,055 Xcc-8004.3154.1 Xcc-8004.3155.1: Xcc-8004.3155.1 - Phosphate transport regulator (distant homolog of PhoU), at 3,073,065 to 3,073,691 Xcc-8004.3155.1 Xcc-8004.3156.1: Xcc-8004.3156.1 - Magnesium and cobalt efflux protein CorC, at 3,073,965 to 3,075,275 Xcc-8004.3156.1 Xcc-8004.3157.1: Xcc-8004.3157.1 - ExoD protein, at 3,075,259 to 3,075,933 Xcc-8004.3157.1 Xcc-8004.3158.1: Xcc-8004.3158.1 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 3,075,965 to 3,076,465 Xcc-8004.3158.1 Position (kb) 3073 3074 3075 3076Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3072.976 kb on + strandat 3073.049 kb on + strandat 3073.049 kb on + strandat 3073.090 kb on + strandat 3073.090 kb on + strandat 3073.091 kb on - strandat 3073.091 kb on - strandat 3073.175 kb on + strand, within Xcc-8004.3155.1at 3073.192 kb on + strand, within Xcc-8004.3155.1at 3073.192 kb on + strand, within Xcc-8004.3155.1at 3073.192 kb on + strand, within Xcc-8004.3155.1at 3073.192 kb on + strand, within Xcc-8004.3155.1at 3073.192 kb on + strand, within Xcc-8004.3155.1at 3073.193 kb on - strand, within Xcc-8004.3155.1at 3073.193 kb on - strand, within Xcc-8004.3155.1at 3073.193 kb on - strand, within Xcc-8004.3155.1at 3073.193 kb on - strand, within Xcc-8004.3155.1at 3073.432 kb on + strand, within Xcc-8004.3155.1at 3073.432 kb on + strand, within Xcc-8004.3155.1at 3073.433 kb on - strand, within Xcc-8004.3155.1at 3073.433 kb on - strand, within Xcc-8004.3155.1at 3073.615 kb on + strand, within Xcc-8004.3155.1at 3073.616 kb on - strand, within Xcc-8004.3155.1at 3073.616 kb on - strand, within Xcc-8004.3155.1at 3073.648 kb on + strandat 3073.648 kb on + strandat 3073.648 kb on + strandat 3073.649 kb on - strandat 3073.649 kb on - strandat 3073.741 kb on + strandat 3073.741 kb on + strandat 3073.741 kb on + strandat 3073.741 kb on + strandat 3073.742 kb on - strandat 3073.742 kb on - strandat 3073.742 kb on - strandat 3073.742 kb on - strandat 3073.742 kb on - strandat 3073.767 kb on + strandat 3073.767 kb on + strandat 3073.767 kb on + strandat 3073.768 kb on - strandat 3073.770 kb on - strandat 3073.770 kb on - strandat 3073.832 kb on - strandat 3073.832 kb on - strandat 3073.832 kb on - strandat 3073.861 kb on + strandat 3073.861 kb on + strandat 3073.861 kb on + strandat 3073.862 kb on - strandat 3073.862 kb on - strandat 3073.862 kb on - strandat 3073.862 kb on - strandat 3073.876 kb on + strandat 3073.924 kb on + strandat 3073.925 kb on - strandat 3073.925 kb on - strandat 3073.925 kb on - strandat 3074.901 kb on + strand, within Xcc-8004.3156.1at 3074.901 kb on + strand, within Xcc-8004.3156.1at 3074.901 kb on + strand, within Xcc-8004.3156.1at 3074.902 kb on - strand, within Xcc-8004.3156.1at 3075.102 kb on + strand, within Xcc-8004.3156.1at 3075.129 kb on + strand, within Xcc-8004.3156.1at 3075.129 kb on + strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.132 kb on + strand, within Xcc-8004.3156.1at 3075.132 kb on + strand, within Xcc-8004.3156.1at 3075.132 kb on + strand, within Xcc-8004.3156.1at 3075.132 kb on + strand, within Xcc-8004.3156.1at 3075.133 kb on - strand, within Xcc-8004.3156.1at 3075.133 kb on - strand, within Xcc-8004.3156.1at 3075.482 kb on + strand, within Xcc-8004.3157.1at 3075.483 kb on - strand, within Xcc-8004.3157.1at 3075.483 kb on - strand, within Xcc-8004.3157.1at 3075.513 kb on - strand, within Xcc-8004.3157.1at 3075.698 kb on + strand, within Xcc-8004.3157.1at 3075.698 kb on + strand, within Xcc-8004.3157.1at 3075.698 kb on + strand, within Xcc-8004.3157.1at 3075.698 kb on + strand, within Xcc-8004.3157.1at 3075.698 kb on + strand, within Xcc-8004.3157.1at 3075.699 kb on - strand, within Xcc-8004.3157.1at 3075.699 kb on - strand, within Xcc-8004.3157.1at 3075.763 kb on + strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.966 kb on + strandat 3075.966 kb on + strandat 3075.966 kb on + strandat 3075.967 kb on - strandat 3076.035 kb on + strand, within Xcc-8004.3158.1at 3076.036 kb on - strand, within Xcc-8004.3158.1at 3076.036 kb on - strand, within Xcc-8004.3158.1at 3076.036 kb on - strand, within Xcc-8004.3158.1at 3076.143 kb on - strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.246 kb on - strand, within Xcc-8004.3158.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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3,072,976 + -0.4
3,073,049 + -0.5
3,073,049 + +0.8
3,073,090 + -0.6
3,073,090 + -0.3
3,073,091 - +4.0
3,073,091 - +0.3
3,073,175 + Xcc-8004.3155.1 0.18 +2.0
3,073,192 + Xcc-8004.3155.1 0.20 +1.2
3,073,192 + Xcc-8004.3155.1 0.20 -0.0
3,073,192 + Xcc-8004.3155.1 0.20 +1.0
3,073,192 + Xcc-8004.3155.1 0.20 -0.5
3,073,192 + Xcc-8004.3155.1 0.20 +0.1
3,073,193 - Xcc-8004.3155.1 0.20 +0.6
3,073,193 - Xcc-8004.3155.1 0.20 +1.8
3,073,193 - Xcc-8004.3155.1 0.20 +0.2
3,073,193 - Xcc-8004.3155.1 0.20 -1.2
3,073,432 + Xcc-8004.3155.1 0.59 +0.4
3,073,432 + Xcc-8004.3155.1 0.59 -0.5
3,073,433 - Xcc-8004.3155.1 0.59 -0.3
3,073,433 - Xcc-8004.3155.1 0.59 -0.0
3,073,615 + Xcc-8004.3155.1 0.88 +0.5
3,073,616 - Xcc-8004.3155.1 0.88 -1.2
3,073,616 - Xcc-8004.3155.1 0.88 +1.3
3,073,648 + -0.0
3,073,648 + +0.2
3,073,648 + -0.3
3,073,649 - +1.6
3,073,649 - +0.3
3,073,741 + +0.1
3,073,741 + -0.5
3,073,741 + +0.2
3,073,741 + +1.3
3,073,742 - -0.2
3,073,742 - -1.7
3,073,742 - -0.5
3,073,742 - +0.1
3,073,742 - +1.2
3,073,767 + +0.6
3,073,767 + +1.0
3,073,767 + +0.4
3,073,768 - -1.1
3,073,770 - -0.1
3,073,770 - +2.0
3,073,832 - -1.5
3,073,832 - -0.6
3,073,832 - -1.9
3,073,861 + +0.8
3,073,861 + +3.1
3,073,861 + +0.9
3,073,862 - +0.9
3,073,862 - -0.9
3,073,862 - +1.0
3,073,862 - -0.1
3,073,876 + +3.4
3,073,924 + -0.9
3,073,925 - -1.7
3,073,925 - -0.4
3,073,925 - +0.9
3,074,901 + Xcc-8004.3156.1 0.71 -1.0
3,074,901 + Xcc-8004.3156.1 0.71 -1.8
3,074,901 + Xcc-8004.3156.1 0.71 -0.2
3,074,902 - Xcc-8004.3156.1 0.71 -0.9
3,075,102 + Xcc-8004.3156.1 0.87 +2.0
3,075,129 + Xcc-8004.3156.1 0.89 -0.5
3,075,129 + Xcc-8004.3156.1 0.89 -1.4
3,075,130 - Xcc-8004.3156.1 0.89 +0.4
3,075,130 - Xcc-8004.3156.1 0.89 -1.9
3,075,130 - Xcc-8004.3156.1 0.89 -1.3
3,075,130 - Xcc-8004.3156.1 0.89 -2.1
3,075,130 - Xcc-8004.3156.1 0.89 -0.7
3,075,130 - Xcc-8004.3156.1 0.89 -0.5
3,075,130 - Xcc-8004.3156.1 0.89 +2.3
3,075,130 - Xcc-8004.3156.1 0.89 +2.4
3,075,132 + Xcc-8004.3156.1 0.89 +0.8
3,075,132 + Xcc-8004.3156.1 0.89 -0.5
3,075,132 + Xcc-8004.3156.1 0.89 -1.0
3,075,132 + Xcc-8004.3156.1 0.89 +0.2
3,075,133 - Xcc-8004.3156.1 0.89 +0.1
3,075,133 - Xcc-8004.3156.1 0.89 -1.7
3,075,482 + Xcc-8004.3157.1 0.33 +0.7
3,075,483 - Xcc-8004.3157.1 0.33 +1.6
3,075,483 - Xcc-8004.3157.1 0.33 -0.6
3,075,513 - Xcc-8004.3157.1 0.38 -2.2
3,075,698 + Xcc-8004.3157.1 0.65 -2.0
3,075,698 + Xcc-8004.3157.1 0.65 -0.3
3,075,698 + Xcc-8004.3157.1 0.65 +0.2
3,075,698 + Xcc-8004.3157.1 0.65 -1.0
3,075,698 + Xcc-8004.3157.1 0.65 +0.2
3,075,699 - Xcc-8004.3157.1 0.65 -0.8
3,075,699 - Xcc-8004.3157.1 0.65 +0.2
3,075,763 + Xcc-8004.3157.1 0.75 -0.0
3,075,764 - Xcc-8004.3157.1 0.75 +1.8
3,075,764 - Xcc-8004.3157.1 0.75 -0.9
3,075,764 - Xcc-8004.3157.1 0.75 -0.0
3,075,764 - Xcc-8004.3157.1 0.75 -0.5
3,075,764 - Xcc-8004.3157.1 0.75 -1.3
3,075,764 - Xcc-8004.3157.1 0.75 -0.8
3,075,764 - Xcc-8004.3157.1 0.75 -1.6
3,075,764 - Xcc-8004.3157.1 0.75 +0.3
3,075,764 - Xcc-8004.3157.1 0.75 -0.4
3,075,966 + -0.7
3,075,966 + -0.1
3,075,966 + +0.1
3,075,967 - -0.7
3,076,035 + Xcc-8004.3158.1 0.14 -0.5
3,076,036 - Xcc-8004.3158.1 0.14 +2.3
3,076,036 - Xcc-8004.3158.1 0.14 -0.3
3,076,036 - Xcc-8004.3158.1 0.14 +0.5
3,076,143 - Xcc-8004.3158.1 0.36 +0.9
3,076,221 + Xcc-8004.3158.1 0.51 +2.0
3,076,221 + Xcc-8004.3158.1 0.51 +0.2
3,076,221 + Xcc-8004.3158.1 0.51 -2.2
3,076,221 + Xcc-8004.3158.1 0.51 +0.6
3,076,221 + Xcc-8004.3158.1 0.51 +0.7
3,076,221 + Xcc-8004.3158.1 0.51 -1.7
3,076,221 + Xcc-8004.3158.1 0.51 -1.0
3,076,222 - Xcc-8004.3158.1 0.51 -1.4
3,076,222 - Xcc-8004.3158.1 0.51 -0.2
3,076,222 - Xcc-8004.3158.1 0.51 +0.3
3,076,222 - Xcc-8004.3158.1 0.51 +0.5
3,076,222 - Xcc-8004.3158.1 0.51 -0.5
3,076,222 - Xcc-8004.3158.1 0.51 +1.0
3,076,246 - Xcc-8004.3158.1 0.56 -0.8

Or see this region's nucleotide sequence