Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1853.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1852.1 and Xcc-8004.1853.1 are separated by 668 nucleotidesXcc-8004.1853.1 and Xcc-8004.1854.1 are separated by 100 nucleotidesXcc-8004.1854.1 and Xcc-8004.1855.1 overlap by 4 nucleotides Xcc-8004.1852.1: Xcc-8004.1852.1 - ABC transporter ATP-binding protein, at 1,787,501 to 1,789,333 Xcc-8004.1852.1 Xcc-8004.1853.1: Xcc-8004.1853.1 - hypothetical protein, at 1,790,002 to 1,791,804 Xcc-8004.1853.1 Xcc-8004.1854.1: Xcc-8004.1854.1 - hypothetical protein, at 1,791,905 to 1,792,030 Xcc-8004.1854.1 Xcc-8004.1855.1: Xcc-8004.1855.1 - FIG01211692: hypothetical protein, at 1,792,027 to 1,792,827 Xcc-8004.1855.1 Position (kb) 1790 1791 1792Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1789.280 kb on + strandat 1789.280 kb on + strandat 1789.281 kb on - strandat 1789.450 kb on - strandat 1789.459 kb on - strandat 1789.470 kb on - strandat 1789.470 kb on - strandat 1789.479 kb on - strandat 1789.601 kb on - strandat 1789.751 kb on + strandat 1789.752 kb on - strandat 1789.772 kb on - strandat 1789.780 kb on + strandat 1789.780 kb on + strandat 1789.924 kb on - strandat 1789.924 kb on - strandat 1790.060 kb on + strandat 1790.081 kb on + strandat 1790.082 kb on - strandat 1790.163 kb on - strandat 1790.163 kb on - strandat 1790.163 kb on - strandat 1790.287 kb on + strand, within Xcc-8004.1853.1at 1790.288 kb on - strand, within Xcc-8004.1853.1at 1790.288 kb on - strand, within Xcc-8004.1853.1at 1790.288 kb on - strand, within Xcc-8004.1853.1at 1790.327 kb on + strand, within Xcc-8004.1853.1at 1790.327 kb on + strand, within Xcc-8004.1853.1at 1790.327 kb on + strand, within Xcc-8004.1853.1at 1790.327 kb on + strand, within Xcc-8004.1853.1at 1790.353 kb on + strand, within Xcc-8004.1853.1at 1790.353 kb on + strand, within Xcc-8004.1853.1at 1790.372 kb on + strand, within Xcc-8004.1853.1at 1790.372 kb on + strand, within Xcc-8004.1853.1at 1790.372 kb on + strand, within Xcc-8004.1853.1at 1790.402 kb on + strand, within Xcc-8004.1853.1at 1790.403 kb on - strand, within Xcc-8004.1853.1at 1790.489 kb on + strand, within Xcc-8004.1853.1at 1790.489 kb on + strand, within Xcc-8004.1853.1at 1790.543 kb on + strand, within Xcc-8004.1853.1at 1790.543 kb on + strand, within Xcc-8004.1853.1at 1790.543 kb on + strand, within Xcc-8004.1853.1at 1790.606 kb on + strand, within Xcc-8004.1853.1at 1790.606 kb on + strand, within Xcc-8004.1853.1at 1790.606 kb on + strand, within Xcc-8004.1853.1at 1790.606 kb on + strand, within Xcc-8004.1853.1at 1790.606 kb on + strand, within Xcc-8004.1853.1at 1790.606 kb on + strand, within Xcc-8004.1853.1at 1790.606 kb on + strand, within Xcc-8004.1853.1at 1790.607 kb on - strand, within Xcc-8004.1853.1at 1790.607 kb on - strand, within Xcc-8004.1853.1at 1790.607 kb on - strand, within Xcc-8004.1853.1at 1790.607 kb on - strand, within Xcc-8004.1853.1at 1790.607 kb on - strand, within Xcc-8004.1853.1at 1790.651 kb on + strand, within Xcc-8004.1853.1at 1790.811 kb on - strand, within Xcc-8004.1853.1at 1790.921 kb on + strand, within Xcc-8004.1853.1at 1790.921 kb on + strand, within Xcc-8004.1853.1at 1790.921 kb on + strand, within Xcc-8004.1853.1at 1790.921 kb on + strand, within Xcc-8004.1853.1at 1790.921 kb on + strand, within Xcc-8004.1853.1at 1790.921 kb on + strand, within Xcc-8004.1853.1at 1790.921 kb on + strand, within Xcc-8004.1853.1at 1790.921 kb on + strand, within Xcc-8004.1853.1at 1790.921 kb on + strand, within Xcc-8004.1853.1at 1790.921 kb on + strand, within Xcc-8004.1853.1at 1790.922 kb on - strand, within Xcc-8004.1853.1at 1790.922 kb on - strand, within Xcc-8004.1853.1at 1790.922 kb on - strand, within Xcc-8004.1853.1at 1790.922 kb on - strand, within Xcc-8004.1853.1at 1790.922 kb on - strand, within Xcc-8004.1853.1at 1790.922 kb on - strand, within Xcc-8004.1853.1at 1790.922 kb on - strand, within Xcc-8004.1853.1at 1790.922 kb on - strand, within Xcc-8004.1853.1at 1791.020 kb on + strand, within Xcc-8004.1853.1at 1791.020 kb on + strand, within Xcc-8004.1853.1at 1791.020 kb on + strand, within Xcc-8004.1853.1at 1791.021 kb on - strand, within Xcc-8004.1853.1at 1791.021 kb on - strand, within Xcc-8004.1853.1at 1791.021 kb on - strand, within Xcc-8004.1853.1at 1791.021 kb on - strand, within Xcc-8004.1853.1at 1791.365 kb on + strand, within Xcc-8004.1853.1at 1791.365 kb on + strand, within Xcc-8004.1853.1at 1791.365 kb on + strand, within Xcc-8004.1853.1at 1791.392 kb on + strand, within Xcc-8004.1853.1at 1791.393 kb on - strand, within Xcc-8004.1853.1at 1791.393 kb on - strand, within Xcc-8004.1853.1at 1791.822 kb on + strandat 1791.823 kb on - strandat 1791.838 kb on + strandat 1791.838 kb on + strandat 1791.839 kb on - strandat 1791.839 kb on - strandat 1791.839 kb on - strandat 1791.839 kb on - strandat 1791.839 kb on - strandat 1791.875 kb on + strandat 1792.168 kb on + strand, within Xcc-8004.1855.1at 1792.168 kb on + strand, within Xcc-8004.1855.1at 1792.168 kb on + strand, within Xcc-8004.1855.1at 1792.168 kb on + strand, within Xcc-8004.1855.1at 1792.168 kb on + strand, within Xcc-8004.1855.1at 1792.169 kb on - strand, within Xcc-8004.1855.1at 1792.169 kb on - strand, within Xcc-8004.1855.1at 1792.709 kb on + strand, within Xcc-8004.1855.1at 1792.709 kb on + strand, within Xcc-8004.1855.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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1,789,280 + +1.9
1,789,280 + -2.3
1,789,281 - +0.9
1,789,450 - -0.8
1,789,459 - +0.8
1,789,470 - +1.1
1,789,470 - +0.8
1,789,479 - +0.2
1,789,601 - -1.0
1,789,751 + -0.6
1,789,752 - -0.4
1,789,772 - +1.4
1,789,780 + -0.6
1,789,780 + -1.6
1,789,924 - -0.6
1,789,924 - +0.4
1,790,060 + -0.7
1,790,081 + +0.9
1,790,082 - +0.7
1,790,163 - +0.9
1,790,163 - +0.4
1,790,163 - -1.0
1,790,287 + Xcc-8004.1853.1 0.16 -0.1
1,790,288 - Xcc-8004.1853.1 0.16 -2.2
1,790,288 - Xcc-8004.1853.1 0.16 +1.0
1,790,288 - Xcc-8004.1853.1 0.16 -1.2
1,790,327 + Xcc-8004.1853.1 0.18 +0.9
1,790,327 + Xcc-8004.1853.1 0.18 +0.7
1,790,327 + Xcc-8004.1853.1 0.18 +1.4
1,790,327 + Xcc-8004.1853.1 0.18 -0.6
1,790,353 + Xcc-8004.1853.1 0.19 -0.1
1,790,353 + Xcc-8004.1853.1 0.19 +0.5
1,790,372 + Xcc-8004.1853.1 0.21 -1.4
1,790,372 + Xcc-8004.1853.1 0.21 +0.4
1,790,372 + Xcc-8004.1853.1 0.21 +0.6
1,790,402 + Xcc-8004.1853.1 0.22 -1.8
1,790,403 - Xcc-8004.1853.1 0.22 -0.9
1,790,489 + Xcc-8004.1853.1 0.27 +0.1
1,790,489 + Xcc-8004.1853.1 0.27 +0.0
1,790,543 + Xcc-8004.1853.1 0.30 +0.6
1,790,543 + Xcc-8004.1853.1 0.30 -0.8
1,790,543 + Xcc-8004.1853.1 0.30 +0.4
1,790,606 + Xcc-8004.1853.1 0.33 -1.4
1,790,606 + Xcc-8004.1853.1 0.33 +0.1
1,790,606 + Xcc-8004.1853.1 0.33 -2.0
1,790,606 + Xcc-8004.1853.1 0.33 +1.1
1,790,606 + Xcc-8004.1853.1 0.33 -0.4
1,790,606 + Xcc-8004.1853.1 0.33 +1.5
1,790,606 + Xcc-8004.1853.1 0.33 -0.4
1,790,607 - Xcc-8004.1853.1 0.34 -1.8
1,790,607 - Xcc-8004.1853.1 0.34 +0.9
1,790,607 - Xcc-8004.1853.1 0.34 +1.9
1,790,607 - Xcc-8004.1853.1 0.34 +0.6
1,790,607 - Xcc-8004.1853.1 0.34 -1.0
1,790,651 + Xcc-8004.1853.1 0.36 -0.2
1,790,811 - Xcc-8004.1853.1 0.45 -0.0
1,790,921 + Xcc-8004.1853.1 0.51 -0.2
1,790,921 + Xcc-8004.1853.1 0.51 +0.8
1,790,921 + Xcc-8004.1853.1 0.51 -0.1
1,790,921 + Xcc-8004.1853.1 0.51 -0.4
1,790,921 + Xcc-8004.1853.1 0.51 -0.8
1,790,921 + Xcc-8004.1853.1 0.51 -1.1
1,790,921 + Xcc-8004.1853.1 0.51 -0.5
1,790,921 + Xcc-8004.1853.1 0.51 -1.3
1,790,921 + Xcc-8004.1853.1 0.51 -2.2
1,790,921 + Xcc-8004.1853.1 0.51 +0.4
1,790,922 - Xcc-8004.1853.1 0.51 -0.4
1,790,922 - Xcc-8004.1853.1 0.51 -0.6
1,790,922 - Xcc-8004.1853.1 0.51 -0.7
1,790,922 - Xcc-8004.1853.1 0.51 -0.3
1,790,922 - Xcc-8004.1853.1 0.51 -1.2
1,790,922 - Xcc-8004.1853.1 0.51 -1.3
1,790,922 - Xcc-8004.1853.1 0.51 +0.7
1,790,922 - Xcc-8004.1853.1 0.51 -0.1
1,791,020 + Xcc-8004.1853.1 0.56 -1.1
1,791,020 + Xcc-8004.1853.1 0.56 -0.4
1,791,020 + Xcc-8004.1853.1 0.56 -0.0
1,791,021 - Xcc-8004.1853.1 0.57 +1.1
1,791,021 - Xcc-8004.1853.1 0.57 -0.4
1,791,021 - Xcc-8004.1853.1 0.57 -1.8
1,791,021 - Xcc-8004.1853.1 0.57 -0.3
1,791,365 + Xcc-8004.1853.1 0.76 -0.1
1,791,365 + Xcc-8004.1853.1 0.76 -0.2
1,791,365 + Xcc-8004.1853.1 0.76 +0.7
1,791,392 + Xcc-8004.1853.1 0.77 -0.7
1,791,393 - Xcc-8004.1853.1 0.77 +1.4
1,791,393 - Xcc-8004.1853.1 0.77 -2.0
1,791,822 + -0.7
1,791,823 - +0.5
1,791,838 + -0.0
1,791,838 + -0.9
1,791,839 - -0.5
1,791,839 - -0.6
1,791,839 - +5.8
1,791,839 - -0.4
1,791,839 - +0.1
1,791,875 + +0.0
1,792,168 + Xcc-8004.1855.1 0.18 -1.0
1,792,168 + Xcc-8004.1855.1 0.18 -1.6
1,792,168 + Xcc-8004.1855.1 0.18 +0.6
1,792,168 + Xcc-8004.1855.1 0.18 -1.0
1,792,168 + Xcc-8004.1855.1 0.18 -0.4
1,792,169 - Xcc-8004.1855.1 0.18 +0.2
1,792,169 - Xcc-8004.1855.1 0.18 +1.3
1,792,709 + Xcc-8004.1855.1 0.85 -0.1
1,792,709 + Xcc-8004.1855.1 0.85 -0.9

Or see this region's nucleotide sequence