Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1597.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1596.1 and Xcc-8004.1597.1 overlap by 4 nucleotidesXcc-8004.1597.1 and Xcc-8004.1598.1 are separated by 276 nucleotides Xcc-8004.1596.1: Xcc-8004.1596.1 - hypothetical protein, at 1,532,259 to 1,533,476 Xcc-8004.1596.1 Xcc-8004.1597.1: Xcc-8004.1597.1 - hypothetical protein, at 1,533,473 to 1,534,561 Xcc-8004.1597.1 Xcc-8004.1598.1: Xcc-8004.1598.1 - Hydrolase, at 1,534,838 to 1,535,833 Xcc-8004.1598.1 Position (kb) 1533 1534 1535Strain fitness (log2 ratio) -2 -1 0 1 2at 1532.583 kb on + strand, within Xcc-8004.1596.1at 1532.877 kb on + strand, within Xcc-8004.1596.1at 1532.878 kb on - strand, within Xcc-8004.1596.1at 1532.878 kb on - strand, within Xcc-8004.1596.1at 1533.108 kb on + strand, within Xcc-8004.1596.1at 1533.108 kb on + strand, within Xcc-8004.1596.1at 1533.108 kb on + strand, within Xcc-8004.1596.1at 1533.108 kb on + strand, within Xcc-8004.1596.1at 1533.108 kb on + strand, within Xcc-8004.1596.1at 1533.109 kb on - strand, within Xcc-8004.1596.1at 1533.109 kb on - strand, within Xcc-8004.1596.1at 1533.109 kb on - strand, within Xcc-8004.1596.1at 1533.241 kb on - strand, within Xcc-8004.1596.1at 1533.241 kb on - strand, within Xcc-8004.1596.1at 1533.585 kb on - strand, within Xcc-8004.1597.1at 1533.586 kb on + strand, within Xcc-8004.1597.1at 1533.587 kb on - strand, within Xcc-8004.1597.1at 1533.893 kb on + strand, within Xcc-8004.1597.1at 1533.893 kb on + strand, within Xcc-8004.1597.1at 1533.894 kb on - strand, within Xcc-8004.1597.1at 1533.894 kb on - strand, within Xcc-8004.1597.1at 1533.920 kb on + strand, within Xcc-8004.1597.1at 1534.056 kb on - strand, within Xcc-8004.1597.1at 1534.056 kb on - strand, within Xcc-8004.1597.1at 1534.066 kb on + strand, within Xcc-8004.1597.1at 1534.066 kb on + strand, within Xcc-8004.1597.1at 1534.066 kb on + strand, within Xcc-8004.1597.1at 1534.067 kb on - strand, within Xcc-8004.1597.1at 1534.067 kb on - strand, within Xcc-8004.1597.1at 1534.386 kb on + strand, within Xcc-8004.1597.1at 1534.731 kb on + strandat 1534.731 kb on + strandat 1534.937 kb on - strandat 1534.937 kb on - strandat 1534.974 kb on + strand, within Xcc-8004.1598.1at 1534.974 kb on + strand, within Xcc-8004.1598.1at 1534.974 kb on + strand, within Xcc-8004.1598.1at 1534.974 kb on + strand, within Xcc-8004.1598.1at 1534.975 kb on - strand, within Xcc-8004.1598.1at 1535.038 kb on + strand, within Xcc-8004.1598.1at 1535.038 kb on + strand, within Xcc-8004.1598.1at 1535.039 kb on - strand, within Xcc-8004.1598.1at 1535.047 kb on + strand, within Xcc-8004.1598.1at 1535.115 kb on + strand, within Xcc-8004.1598.1at 1535.115 kb on + strand, within Xcc-8004.1598.1at 1535.167 kb on + strand, within Xcc-8004.1598.1at 1535.220 kb on + strand, within Xcc-8004.1598.1at 1535.220 kb on + strand, within Xcc-8004.1598.1at 1535.220 kb on + strand, within Xcc-8004.1598.1at 1535.221 kb on - strand, within Xcc-8004.1598.1at 1535.221 kb on - strand, within Xcc-8004.1598.1at 1535.221 kb on - strand, within Xcc-8004.1598.1at 1535.223 kb on + strand, within Xcc-8004.1598.1at 1535.223 kb on + strand, within Xcc-8004.1598.1at 1535.223 kb on + strand, within Xcc-8004.1598.1at 1535.223 kb on + strand, within Xcc-8004.1598.1at 1535.223 kb on + strand, within Xcc-8004.1598.1at 1535.224 kb on - strand, within Xcc-8004.1598.1at 1535.224 kb on - strand, within Xcc-8004.1598.1at 1535.224 kb on - strand, within Xcc-8004.1598.1at 1535.224 kb on - strand, within Xcc-8004.1598.1at 1535.224 kb on - strand, within Xcc-8004.1598.1at 1535.238 kb on + strand, within Xcc-8004.1598.1at 1535.238 kb on + strand, within Xcc-8004.1598.1at 1535.239 kb on - strand, within Xcc-8004.1598.1at 1535.281 kb on - strand, within Xcc-8004.1598.1at 1535.281 kb on - strand, within Xcc-8004.1598.1at 1535.376 kb on + strand, within Xcc-8004.1598.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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1,532,583 + Xcc-8004.1596.1 0.27 +1.4
1,532,877 + Xcc-8004.1596.1 0.51 -0.2
1,532,878 - Xcc-8004.1596.1 0.51 -0.9
1,532,878 - Xcc-8004.1596.1 0.51 +1.7
1,533,108 + Xcc-8004.1596.1 0.70 -2.4
1,533,108 + Xcc-8004.1596.1 0.70 -1.2
1,533,108 + Xcc-8004.1596.1 0.70 -1.2
1,533,108 + Xcc-8004.1596.1 0.70 +0.9
1,533,108 + Xcc-8004.1596.1 0.70 -1.0
1,533,109 - Xcc-8004.1596.1 0.70 +0.2
1,533,109 - Xcc-8004.1596.1 0.70 +0.4
1,533,109 - Xcc-8004.1596.1 0.70 -1.2
1,533,241 - Xcc-8004.1596.1 0.81 -0.6
1,533,241 - Xcc-8004.1596.1 0.81 -1.7
1,533,585 - Xcc-8004.1597.1 0.10 -1.5
1,533,586 + Xcc-8004.1597.1 0.10 -0.6
1,533,587 - Xcc-8004.1597.1 0.10 -0.2
1,533,893 + Xcc-8004.1597.1 0.39 -1.6
1,533,893 + Xcc-8004.1597.1 0.39 +0.8
1,533,894 - Xcc-8004.1597.1 0.39 +0.1
1,533,894 - Xcc-8004.1597.1 0.39 -2.0
1,533,920 + Xcc-8004.1597.1 0.41 +0.7
1,534,056 - Xcc-8004.1597.1 0.54 -1.5
1,534,056 - Xcc-8004.1597.1 0.54 +1.4
1,534,066 + Xcc-8004.1597.1 0.54 +0.9
1,534,066 + Xcc-8004.1597.1 0.54 -0.4
1,534,066 + Xcc-8004.1597.1 0.54 +0.1
1,534,067 - Xcc-8004.1597.1 0.55 +0.7
1,534,067 - Xcc-8004.1597.1 0.55 +0.7
1,534,386 + Xcc-8004.1597.1 0.84 -0.7
1,534,731 + +0.9
1,534,731 + -0.7
1,534,937 - -0.3
1,534,937 - -0.6
1,534,974 + Xcc-8004.1598.1 0.14 -0.2
1,534,974 + Xcc-8004.1598.1 0.14 +0.6
1,534,974 + Xcc-8004.1598.1 0.14 +1.5
1,534,974 + Xcc-8004.1598.1 0.14 -0.1
1,534,975 - Xcc-8004.1598.1 0.14 +0.3
1,535,038 + Xcc-8004.1598.1 0.20 +1.1
1,535,038 + Xcc-8004.1598.1 0.20 +2.0
1,535,039 - Xcc-8004.1598.1 0.20 +0.6
1,535,047 + Xcc-8004.1598.1 0.21 +1.4
1,535,115 + Xcc-8004.1598.1 0.28 -0.7
1,535,115 + Xcc-8004.1598.1 0.28 +1.0
1,535,167 + Xcc-8004.1598.1 0.33 -0.5
1,535,220 + Xcc-8004.1598.1 0.38 -1.4
1,535,220 + Xcc-8004.1598.1 0.38 -0.7
1,535,220 + Xcc-8004.1598.1 0.38 -0.3
1,535,221 - Xcc-8004.1598.1 0.38 -0.4
1,535,221 - Xcc-8004.1598.1 0.38 -1.2
1,535,221 - Xcc-8004.1598.1 0.38 +0.8
1,535,223 + Xcc-8004.1598.1 0.39 +0.4
1,535,223 + Xcc-8004.1598.1 0.39 +0.4
1,535,223 + Xcc-8004.1598.1 0.39 -0.9
1,535,223 + Xcc-8004.1598.1 0.39 +0.4
1,535,223 + Xcc-8004.1598.1 0.39 +1.2
1,535,224 - Xcc-8004.1598.1 0.39 -0.3
1,535,224 - Xcc-8004.1598.1 0.39 -0.3
1,535,224 - Xcc-8004.1598.1 0.39 -0.5
1,535,224 - Xcc-8004.1598.1 0.39 +0.8
1,535,224 - Xcc-8004.1598.1 0.39 -0.3
1,535,238 + Xcc-8004.1598.1 0.40 +2.0
1,535,238 + Xcc-8004.1598.1 0.40 +2.5
1,535,239 - Xcc-8004.1598.1 0.40 +1.0
1,535,281 - Xcc-8004.1598.1 0.44 -0.2
1,535,281 - Xcc-8004.1598.1 0.44 +1.3
1,535,376 + Xcc-8004.1598.1 0.54 -0.3

Or see this region's nucleotide sequence