Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1422.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1421.1 and Xcc-8004.1422.1 are separated by 100 nucleotidesXcc-8004.1422.1 and Xcc-8004.1424.1 are separated by 412 nucleotides Xcc-8004.1421.1: Xcc-8004.1421.1 - Xylanase, at 1,357,348 to 1,358,367 Xcc-8004.1421.1 Xcc-8004.1422.1: Xcc-8004.1422.1 - Phospholipase C, at 1,358,468 to 1,360,615 Xcc-8004.1422.1 Xcc-8004.1424.1: Xcc-8004.1424.1 - Ferrichrome-iron receptor, at 1,361,028 to 1,363,436 Xcc-8004.1424.1 Position (kb) 1358 1359 1360 1361Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1357.621 kb on + strand, within Xcc-8004.1421.1at 1357.621 kb on + strand, within Xcc-8004.1421.1at 1357.621 kb on + strand, within Xcc-8004.1421.1at 1357.621 kb on + strand, within Xcc-8004.1421.1at 1357.621 kb on + strand, within Xcc-8004.1421.1at 1357.622 kb on - strand, within Xcc-8004.1421.1at 1357.622 kb on - strand, within Xcc-8004.1421.1at 1357.622 kb on - strand, within Xcc-8004.1421.1at 1357.715 kb on + strand, within Xcc-8004.1421.1at 1357.715 kb on + strand, within Xcc-8004.1421.1at 1357.716 kb on - strand, within Xcc-8004.1421.1at 1357.808 kb on - strand, within Xcc-8004.1421.1at 1357.810 kb on + strand, within Xcc-8004.1421.1at 1357.954 kb on - strand, within Xcc-8004.1421.1at 1357.975 kb on + strand, within Xcc-8004.1421.1at 1357.975 kb on + strand, within Xcc-8004.1421.1at 1357.976 kb on - strand, within Xcc-8004.1421.1at 1357.976 kb on - strand, within Xcc-8004.1421.1at 1357.976 kb on - strand, within Xcc-8004.1421.1at 1358.035 kb on + strand, within Xcc-8004.1421.1at 1358.036 kb on - strand, within Xcc-8004.1421.1at 1358.197 kb on + strand, within Xcc-8004.1421.1at 1358.197 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.245 kb on + strand, within Xcc-8004.1421.1at 1358.246 kb on - strand, within Xcc-8004.1421.1at 1358.246 kb on - strand, within Xcc-8004.1421.1at 1358.505 kb on + strandat 1358.506 kb on - strandat 1358.506 kb on - strandat 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.753 kb on + strand, within Xcc-8004.1422.1at 1358.890 kb on - strand, within Xcc-8004.1422.1at 1358.934 kb on + strand, within Xcc-8004.1422.1at 1358.934 kb on + strand, within Xcc-8004.1422.1at 1358.970 kb on + strand, within Xcc-8004.1422.1at 1358.970 kb on + strand, within Xcc-8004.1422.1at 1359.178 kb on + strand, within Xcc-8004.1422.1at 1359.179 kb on - strand, within Xcc-8004.1422.1at 1359.274 kb on + strand, within Xcc-8004.1422.1at 1359.275 kb on - strand, within Xcc-8004.1422.1at 1359.337 kb on - strand, within Xcc-8004.1422.1at 1359.380 kb on + strand, within Xcc-8004.1422.1at 1359.380 kb on + strand, within Xcc-8004.1422.1at 1359.381 kb on - strand, within Xcc-8004.1422.1at 1359.381 kb on - strand, within Xcc-8004.1422.1at 1359.381 kb on - strand, within Xcc-8004.1422.1at 1359.384 kb on + strand, within Xcc-8004.1422.1at 1359.384 kb on + strand, within Xcc-8004.1422.1at 1359.384 kb on + strand, within Xcc-8004.1422.1at 1359.475 kb on - strand, within Xcc-8004.1422.1at 1359.475 kb on - strand, within Xcc-8004.1422.1at 1359.660 kb on + strand, within Xcc-8004.1422.1at 1359.660 kb on + strand, within Xcc-8004.1422.1at 1359.660 kb on + strand, within Xcc-8004.1422.1at 1359.661 kb on - strand, within Xcc-8004.1422.1at 1359.837 kb on + strand, within Xcc-8004.1422.1at 1359.837 kb on + strand, within Xcc-8004.1422.1at 1359.838 kb on - strand, within Xcc-8004.1422.1at 1359.903 kb on + strand, within Xcc-8004.1422.1at 1359.945 kb on + strand, within Xcc-8004.1422.1at 1359.945 kb on + strand, within Xcc-8004.1422.1at 1359.945 kb on + strand, within Xcc-8004.1422.1at 1359.945 kb on + strand, within Xcc-8004.1422.1at 1359.945 kb on + strand, within Xcc-8004.1422.1at 1359.945 kb on + strand, within Xcc-8004.1422.1at 1359.945 kb on + strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1359.946 kb on - strand, within Xcc-8004.1422.1at 1360.167 kb on + strand, within Xcc-8004.1422.1at 1360.168 kb on - strand, within Xcc-8004.1422.1at 1360.171 kb on - strand, within Xcc-8004.1422.1at 1360.278 kb on + strand, within Xcc-8004.1422.1at 1360.278 kb on + strand, within Xcc-8004.1422.1at 1360.279 kb on - strand, within Xcc-8004.1422.1at 1360.279 kb on - strand, within Xcc-8004.1422.1at 1360.440 kb on + strandat 1360.440 kb on + strandat 1360.441 kb on - strandat 1360.916 kb on - strandat 1361.005 kb on + strandat 1361.006 kb on - strandat 1361.006 kb on - strandat 1361.252 kb on - strandat 1361.267 kb on - strandat 1361.422 kb on + strand, within Xcc-8004.1424.1at 1361.422 kb on + strand, within Xcc-8004.1424.1at 1361.422 kb on + strand, within Xcc-8004.1424.1at 1361.422 kb on + strand, within Xcc-8004.1424.1at 1361.422 kb on + strand, within Xcc-8004.1424.1at 1361.423 kb on - strand, within Xcc-8004.1424.1at 1361.423 kb on - strand, within Xcc-8004.1424.1at 1361.428 kb on + strand, within Xcc-8004.1424.1at 1361.428 kb on + strand, within Xcc-8004.1424.1at 1361.429 kb on - strand, within Xcc-8004.1424.1at 1361.429 kb on - strand, within Xcc-8004.1424.1at 1361.602 kb on + strand, within Xcc-8004.1424.1at 1361.602 kb on + strand, within Xcc-8004.1424.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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1,357,621 + Xcc-8004.1421.1 0.27 +1.1
1,357,621 + Xcc-8004.1421.1 0.27 -0.6
1,357,621 + Xcc-8004.1421.1 0.27 +0.2
1,357,621 + Xcc-8004.1421.1 0.27 -2.4
1,357,621 + Xcc-8004.1421.1 0.27 -0.5
1,357,622 - Xcc-8004.1421.1 0.27 -1.1
1,357,622 - Xcc-8004.1421.1 0.27 +0.1
1,357,622 - Xcc-8004.1421.1 0.27 +0.0
1,357,715 + Xcc-8004.1421.1 0.36 -0.3
1,357,715 + Xcc-8004.1421.1 0.36 +0.1
1,357,716 - Xcc-8004.1421.1 0.36 -0.6
1,357,808 - Xcc-8004.1421.1 0.45 +0.9
1,357,810 + Xcc-8004.1421.1 0.45 +1.1
1,357,954 - Xcc-8004.1421.1 0.59 -0.1
1,357,975 + Xcc-8004.1421.1 0.61 +1.9
1,357,975 + Xcc-8004.1421.1 0.61 +1.0
1,357,976 - Xcc-8004.1421.1 0.62 -0.3
1,357,976 - Xcc-8004.1421.1 0.62 -0.6
1,357,976 - Xcc-8004.1421.1 0.62 -1.4
1,358,035 + Xcc-8004.1421.1 0.67 +1.9
1,358,036 - Xcc-8004.1421.1 0.67 +2.5
1,358,197 + Xcc-8004.1421.1 0.83 +1.0
1,358,197 + Xcc-8004.1421.1 0.83 -0.5
1,358,200 + Xcc-8004.1421.1 0.84 +0.6
1,358,200 + Xcc-8004.1421.1 0.84 -1.0
1,358,200 + Xcc-8004.1421.1 0.84 -0.4
1,358,200 + Xcc-8004.1421.1 0.84 -0.1
1,358,200 + Xcc-8004.1421.1 0.84 -0.5
1,358,200 + Xcc-8004.1421.1 0.84 +0.1
1,358,200 + Xcc-8004.1421.1 0.84 +0.3
1,358,201 - Xcc-8004.1421.1 0.84 +0.1
1,358,201 - Xcc-8004.1421.1 0.84 -0.6
1,358,201 - Xcc-8004.1421.1 0.84 -0.5
1,358,201 - Xcc-8004.1421.1 0.84 -1.0
1,358,201 - Xcc-8004.1421.1 0.84 +0.0
1,358,201 - Xcc-8004.1421.1 0.84 -0.3
1,358,201 - Xcc-8004.1421.1 0.84 +0.0
1,358,201 - Xcc-8004.1421.1 0.84 +0.1
1,358,245 + Xcc-8004.1421.1 0.88 +0.4
1,358,246 - Xcc-8004.1421.1 0.88 +0.2
1,358,246 - Xcc-8004.1421.1 0.88 +0.5
1,358,505 + +1.1
1,358,506 - -0.1
1,358,506 - +1.0
1,358,751 + Xcc-8004.1422.1 0.13 -1.2
1,358,751 + Xcc-8004.1422.1 0.13 -1.3
1,358,751 + Xcc-8004.1422.1 0.13 +0.4
1,358,751 + Xcc-8004.1422.1 0.13 +0.7
1,358,751 + Xcc-8004.1422.1 0.13 +0.4
1,358,751 + Xcc-8004.1422.1 0.13 +2.8
1,358,751 + Xcc-8004.1422.1 0.13 +0.3
1,358,751 + Xcc-8004.1422.1 0.13 +0.3
1,358,752 - Xcc-8004.1422.1 0.13 -0.0
1,358,752 - Xcc-8004.1422.1 0.13 -0.7
1,358,752 - Xcc-8004.1422.1 0.13 -0.2
1,358,752 - Xcc-8004.1422.1 0.13 -1.0
1,358,752 - Xcc-8004.1422.1 0.13 +0.2
1,358,752 - Xcc-8004.1422.1 0.13 +1.2
1,358,752 - Xcc-8004.1422.1 0.13 +0.2
1,358,752 - Xcc-8004.1422.1 0.13 -1.2
1,358,752 - Xcc-8004.1422.1 0.13 +0.2
1,358,752 - Xcc-8004.1422.1 0.13 +0.6
1,358,752 - Xcc-8004.1422.1 0.13 -0.4
1,358,752 - Xcc-8004.1422.1 0.13 +0.8
1,358,752 - Xcc-8004.1422.1 0.13 +1.5
1,358,753 + Xcc-8004.1422.1 0.13 +0.7
1,358,890 - Xcc-8004.1422.1 0.20 +0.6
1,358,934 + Xcc-8004.1422.1 0.22 +1.2
1,358,934 + Xcc-8004.1422.1 0.22 +0.6
1,358,970 + Xcc-8004.1422.1 0.23 +0.4
1,358,970 + Xcc-8004.1422.1 0.23 +0.4
1,359,178 + Xcc-8004.1422.1 0.33 -0.6
1,359,179 - Xcc-8004.1422.1 0.33 +0.7
1,359,274 + Xcc-8004.1422.1 0.38 -0.4
1,359,275 - Xcc-8004.1422.1 0.38 -1.0
1,359,337 - Xcc-8004.1422.1 0.40 -0.4
1,359,380 + Xcc-8004.1422.1 0.42 +1.2
1,359,380 + Xcc-8004.1422.1 0.42 -0.8
1,359,381 - Xcc-8004.1422.1 0.43 +0.5
1,359,381 - Xcc-8004.1422.1 0.43 +0.4
1,359,381 - Xcc-8004.1422.1 0.43 +0.6
1,359,384 + Xcc-8004.1422.1 0.43 -0.6
1,359,384 + Xcc-8004.1422.1 0.43 -2.1
1,359,384 + Xcc-8004.1422.1 0.43 -0.0
1,359,475 - Xcc-8004.1422.1 0.47 +0.7
1,359,475 - Xcc-8004.1422.1 0.47 -1.2
1,359,660 + Xcc-8004.1422.1 0.55 +0.6
1,359,660 + Xcc-8004.1422.1 0.55 +1.7
1,359,660 + Xcc-8004.1422.1 0.55 +1.6
1,359,661 - Xcc-8004.1422.1 0.56 +0.1
1,359,837 + Xcc-8004.1422.1 0.64 +0.5
1,359,837 + Xcc-8004.1422.1 0.64 -1.5
1,359,838 - Xcc-8004.1422.1 0.64 +0.3
1,359,903 + Xcc-8004.1422.1 0.67 -0.4
1,359,945 + Xcc-8004.1422.1 0.69 -0.9
1,359,945 + Xcc-8004.1422.1 0.69 -0.6
1,359,945 + Xcc-8004.1422.1 0.69 +0.3
1,359,945 + Xcc-8004.1422.1 0.69 +0.3
1,359,945 + Xcc-8004.1422.1 0.69 -0.5
1,359,945 + Xcc-8004.1422.1 0.69 +0.2
1,359,945 + Xcc-8004.1422.1 0.69 -0.4
1,359,946 - Xcc-8004.1422.1 0.69 +0.1
1,359,946 - Xcc-8004.1422.1 0.69 +1.0
1,359,946 - Xcc-8004.1422.1 0.69 -0.9
1,359,946 - Xcc-8004.1422.1 0.69 +1.6
1,359,946 - Xcc-8004.1422.1 0.69 -2.0
1,359,946 - Xcc-8004.1422.1 0.69 -0.3
1,359,946 - Xcc-8004.1422.1 0.69 -0.9
1,359,946 - Xcc-8004.1422.1 0.69 +2.0
1,359,946 - Xcc-8004.1422.1 0.69 +0.2
1,359,946 - Xcc-8004.1422.1 0.69 -0.2
1,359,946 - Xcc-8004.1422.1 0.69 +0.3
1,360,167 + Xcc-8004.1422.1 0.79 +0.0
1,360,168 - Xcc-8004.1422.1 0.79 -1.1
1,360,171 - Xcc-8004.1422.1 0.79 +2.4
1,360,278 + Xcc-8004.1422.1 0.84 -0.2
1,360,278 + Xcc-8004.1422.1 0.84 -0.3
1,360,279 - Xcc-8004.1422.1 0.84 -0.2
1,360,279 - Xcc-8004.1422.1 0.84 -0.2
1,360,440 + +1.7
1,360,440 + -0.4
1,360,441 - -0.6
1,360,916 - -0.6
1,361,005 + +0.1
1,361,006 - -3.3
1,361,006 - -1.0
1,361,252 - +0.7
1,361,267 - +0.6
1,361,422 + Xcc-8004.1424.1 0.16 -0.5
1,361,422 + Xcc-8004.1424.1 0.16 -0.2
1,361,422 + Xcc-8004.1424.1 0.16 -1.0
1,361,422 + Xcc-8004.1424.1 0.16 +0.1
1,361,422 + Xcc-8004.1424.1 0.16 -0.4
1,361,423 - Xcc-8004.1424.1 0.16 -1.3
1,361,423 - Xcc-8004.1424.1 0.16 +1.7
1,361,428 + Xcc-8004.1424.1 0.17 +2.1
1,361,428 + Xcc-8004.1424.1 0.17 +0.9
1,361,429 - Xcc-8004.1424.1 0.17 +1.0
1,361,429 - Xcc-8004.1424.1 0.17 -3.0
1,361,602 + Xcc-8004.1424.1 0.24 +1.7
1,361,602 + Xcc-8004.1424.1 0.24 +0.7

Or see this region's nucleotide sequence