Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.121.1 and Xcc-8004.122.1 are separated by 14 nucleotides Xcc-8004.122.1 and Xcc-8004.124.1 are separated by 513 nucleotides Xcc-8004.124.1 and Xcc-8004.123.1 overlap by 139 nucleotides
Xcc-8004.121.1: Xcc-8004.121.1 - TldE/PmbA family protein, Actinobacterial subgroup, at 110,192 to 111,526
Xcc-8004.121.1
Xcc-8004.122.1: Xcc-8004.122.1 - TldD family protein, Actinobacterial subgroup, at 111,541 to 113,217
Xcc-8004.122.1
Xcc-8004.124.1: Xcc-8004.124.1 - hypothetical protein, at 113,731 to 114,162
Xcc-8004.124.1
Xcc-8004.123.1: Xcc-8004.123.1 - TldD family protein, Actinobacterial subgroup, at 114,024 to 115,685
Xcc-8004.123.1
Position (kb) 111
112
113
114 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 110.586 kb on + strand, within Xcc-8004.121.1 at 110.587 kb on - strand, within Xcc-8004.121.1 at 110.716 kb on - strand, within Xcc-8004.121.1 at 110.716 kb on - strand, within Xcc-8004.121.1 at 110.853 kb on + strand, within Xcc-8004.121.1 at 110.853 kb on + strand, within Xcc-8004.121.1 at 110.853 kb on + strand, within Xcc-8004.121.1 at 110.853 kb on + strand, within Xcc-8004.121.1 at 110.854 kb on - strand, within Xcc-8004.121.1 at 110.854 kb on - strand, within Xcc-8004.121.1 at 110.911 kb on + strand, within Xcc-8004.121.1 at 110.911 kb on + strand, within Xcc-8004.121.1 at 110.912 kb on - strand, within Xcc-8004.121.1 at 111.033 kb on + strand, within Xcc-8004.121.1 at 111.208 kb on - strand, within Xcc-8004.121.1 at 111.208 kb on - strand, within Xcc-8004.121.1 at 111.208 kb on - strand, within Xcc-8004.121.1 at 111.282 kb on - strand, within Xcc-8004.121.1 at 111.401 kb on - strand at 111.514 kb on + strand at 111.529 kb on - strand at 111.728 kb on + strand, within Xcc-8004.122.1 at 111.728 kb on + strand, within Xcc-8004.122.1 at 111.729 kb on - strand, within Xcc-8004.122.1 at 111.729 kb on - strand, within Xcc-8004.122.1 at 111.807 kb on - strand, within Xcc-8004.122.1 at 111.807 kb on - strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.962 kb on + strand, within Xcc-8004.122.1 at 111.962 kb on + strand, within Xcc-8004.122.1 at 111.963 kb on - strand, within Xcc-8004.122.1 at 111.996 kb on + strand, within Xcc-8004.122.1 at 111.997 kb on - strand, within Xcc-8004.122.1 at 111.997 kb on - strand, within Xcc-8004.122.1 at 112.022 kb on + strand, within Xcc-8004.122.1 at 112.022 kb on + strand, within Xcc-8004.122.1 at 112.086 kb on - strand, within Xcc-8004.122.1 at 112.131 kb on + strand, within Xcc-8004.122.1 at 112.131 kb on + strand, within Xcc-8004.122.1 at 112.132 kb on - strand, within Xcc-8004.122.1 at 112.132 kb on - strand, within Xcc-8004.122.1 at 112.132 kb on - strand, within Xcc-8004.122.1 at 112.301 kb on + strand, within Xcc-8004.122.1 at 112.302 kb on - strand, within Xcc-8004.122.1 at 112.302 kb on - strand, within Xcc-8004.122.1 at 112.302 kb on - strand, within Xcc-8004.122.1 at 112.302 kb on - strand, within Xcc-8004.122.1 at 112.302 kb on - strand, within Xcc-8004.122.1 at 112.382 kb on + strand, within Xcc-8004.122.1 at 112.383 kb on - strand, within Xcc-8004.122.1 at 112.383 kb on - strand, within Xcc-8004.122.1 at 112.394 kb on + strand, within Xcc-8004.122.1 at 112.395 kb on - strand, within Xcc-8004.122.1 at 112.448 kb on + strand, within Xcc-8004.122.1 at 112.448 kb on + strand, within Xcc-8004.122.1 at 112.449 kb on - strand, within Xcc-8004.122.1 at 112.454 kb on + strand, within Xcc-8004.122.1 at 112.568 kb on + strand, within Xcc-8004.122.1 at 112.568 kb on + strand, within Xcc-8004.122.1 at 112.569 kb on - strand, within Xcc-8004.122.1 at 112.569 kb on - strand, within Xcc-8004.122.1 at 112.569 kb on - strand, within Xcc-8004.122.1 at 112.569 kb on - strand, within Xcc-8004.122.1 at 112.569 kb on - strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.593 kb on - strand, within Xcc-8004.122.1 at 112.977 kb on - strand, within Xcc-8004.122.1 at 113.000 kb on + strand, within Xcc-8004.122.1 at 113.000 kb on + strand, within Xcc-8004.122.1 at 113.001 kb on - strand, within Xcc-8004.122.1 at 113.001 kb on - strand, within Xcc-8004.122.1 at 113.001 kb on - strand, within Xcc-8004.122.1 at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.190 kb on + strand at 113.191 kb on - strand at 113.444 kb on - strand at 113.444 kb on - strand at 113.499 kb on + strand at 113.499 kb on + strand at 113.499 kb on + strand at 113.502 kb on - strand at 113.502 kb on - strand at 113.502 kb on - strand at 113.516 kb on - strand at 113.516 kb on - strand at 113.516 kb on - strand at 113.588 kb on + strand at 113.589 kb on - strand at 113.589 kb on - strand at 113.589 kb on - strand at 113.589 kb on - strand at 113.599 kb on - strand at 113.606 kb on + strand at 113.606 kb on + strand at 113.607 kb on - strand at 113.627 kb on - strand at 113.627 kb on - strand at 113.627 kb on - strand at 113.627 kb on - strand at 113.751 kb on + strand at 113.751 kb on + strand at 113.751 kb on + strand at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.851 kb on - strand, within Xcc-8004.124.1 at 113.851 kb on - strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.861 kb on - strand, within Xcc-8004.124.1 at 113.966 kb on + strand, within Xcc-8004.124.1 at 113.966 kb on + strand, within Xcc-8004.124.1 at 113.967 kb on - strand, within Xcc-8004.124.1 at 113.967 kb on - strand, within Xcc-8004.124.1 at 113.967 kb on - strand, within Xcc-8004.124.1 at 113.988 kb on - strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.001 kb on - strand, within Xcc-8004.124.1 at 114.051 kb on + strand at 114.051 kb on + strand at 114.051 kb on + strand at 114.051 kb on + strand at 114.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 110,586 + Xcc-8004.121.1 0.30 +0.6 110,587 - Xcc-8004.121.1 0.30 +1.3 110,716 - Xcc-8004.121.1 0.39 -2.1 110,716 - Xcc-8004.121.1 0.39 +0.4 110,853 + Xcc-8004.121.1 0.50 -0.8 110,853 + Xcc-8004.121.1 0.50 -0.1 110,853 + Xcc-8004.121.1 0.50 -1.0 110,853 + Xcc-8004.121.1 0.50 +1.2 110,854 - Xcc-8004.121.1 0.50 -1.0 110,854 - Xcc-8004.121.1 0.50 -0.6 110,911 + Xcc-8004.121.1 0.54 +0.3 110,911 + Xcc-8004.121.1 0.54 -1.1 110,912 - Xcc-8004.121.1 0.54 +1.2 111,033 + Xcc-8004.121.1 0.63 +1.2 111,208 - Xcc-8004.121.1 0.76 -0.6 111,208 - Xcc-8004.121.1 0.76 -0.7 111,208 - Xcc-8004.121.1 0.76 +0.9 111,282 - Xcc-8004.121.1 0.82 -0.4 111,401 - +1.1 111,514 + +1.4 111,529 - +1.3 111,728 + Xcc-8004.122.1 0.11 -0.0 111,728 + Xcc-8004.122.1 0.11 -1.2 111,729 - Xcc-8004.122.1 0.11 +4.0 111,729 - Xcc-8004.122.1 0.11 +0.5 111,807 - Xcc-8004.122.1 0.16 -1.2 111,807 - Xcc-8004.122.1 0.16 -1.5 111,848 + Xcc-8004.122.1 0.18 +1.9 111,848 + Xcc-8004.122.1 0.18 -0.9 111,848 + Xcc-8004.122.1 0.18 -0.3 111,848 + Xcc-8004.122.1 0.18 +0.2 111,848 + Xcc-8004.122.1 0.18 -0.8 111,848 + Xcc-8004.122.1 0.18 +0.8 111,849 - Xcc-8004.122.1 0.18 +1.8 111,849 - Xcc-8004.122.1 0.18 +0.2 111,849 - Xcc-8004.122.1 0.18 -0.2 111,849 - Xcc-8004.122.1 0.18 -0.2 111,849 - Xcc-8004.122.1 0.18 -0.6 111,849 - Xcc-8004.122.1 0.18 +0.2 111,849 - Xcc-8004.122.1 0.18 -0.8 111,849 - Xcc-8004.122.1 0.18 -1.0 111,962 + Xcc-8004.122.1 0.25 +1.0 111,962 + Xcc-8004.122.1 0.25 -0.5 111,963 - Xcc-8004.122.1 0.25 +0.9 111,996 + Xcc-8004.122.1 0.27 -0.6 111,997 - Xcc-8004.122.1 0.27 -0.9 111,997 - Xcc-8004.122.1 0.27 +0.3 112,022 + Xcc-8004.122.1 0.29 -1.0 112,022 + Xcc-8004.122.1 0.29 -0.8 112,086 - Xcc-8004.122.1 0.32 -0.3 112,131 + Xcc-8004.122.1 0.35 -0.4 112,131 + Xcc-8004.122.1 0.35 -0.7 112,132 - Xcc-8004.122.1 0.35 +0.1 112,132 - Xcc-8004.122.1 0.35 +1.6 112,132 - Xcc-8004.122.1 0.35 +1.1 112,301 + Xcc-8004.122.1 0.45 +1.7 112,302 - Xcc-8004.122.1 0.45 -0.0 112,302 - Xcc-8004.122.1 0.45 +1.0 112,302 - Xcc-8004.122.1 0.45 +2.7 112,302 - Xcc-8004.122.1 0.45 +0.4 112,302 - Xcc-8004.122.1 0.45 +0.5 112,382 + Xcc-8004.122.1 0.50 -0.4 112,383 - Xcc-8004.122.1 0.50 -1.5 112,383 - Xcc-8004.122.1 0.50 -0.1 112,394 + Xcc-8004.122.1 0.51 -0.8 112,395 - Xcc-8004.122.1 0.51 +1.4 112,448 + Xcc-8004.122.1 0.54 -2.5 112,448 + Xcc-8004.122.1 0.54 -2.8 112,449 - Xcc-8004.122.1 0.54 -0.7 112,454 + Xcc-8004.122.1 0.54 +0.3 112,568 + Xcc-8004.122.1 0.61 -0.1 112,568 + Xcc-8004.122.1 0.61 -0.2 112,569 - Xcc-8004.122.1 0.61 +1.7 112,569 - Xcc-8004.122.1 0.61 +0.1 112,569 - Xcc-8004.122.1 0.61 -0.5 112,569 - Xcc-8004.122.1 0.61 +0.6 112,569 - Xcc-8004.122.1 0.61 +0.3 112,592 + Xcc-8004.122.1 0.63 +0.8 112,592 + Xcc-8004.122.1 0.63 -1.9 112,592 + Xcc-8004.122.1 0.63 -0.8 112,592 + Xcc-8004.122.1 0.63 +2.0 112,592 + Xcc-8004.122.1 0.63 -1.6 112,592 + Xcc-8004.122.1 0.63 -0.8 112,592 + Xcc-8004.122.1 0.63 -0.8 112,593 - Xcc-8004.122.1 0.63 -1.0 112,977 - Xcc-8004.122.1 0.86 -2.2 113,000 + Xcc-8004.122.1 0.87 +0.8 113,000 + Xcc-8004.122.1 0.87 -2.6 113,001 - Xcc-8004.122.1 0.87 +0.6 113,001 - Xcc-8004.122.1 0.87 -1.0 113,001 - Xcc-8004.122.1 0.87 +2.9 113,112 - +1.2 113,112 - +1.4 113,112 - +0.1 113,112 - +1.8 113,112 - +0.0 113,112 - -1.5 113,190 + +0.6 113,191 - +0.6 113,444 - -0.5 113,444 - +0.8 113,499 + -0.6 113,499 + -0.5 113,499 + +1.0 113,502 - -2.1 113,502 - -0.7 113,502 - -1.6 113,516 - +0.5 113,516 - -0.2 113,516 - +1.5 113,588 + -0.2 113,589 - -0.5 113,589 - -0.2 113,589 - +0.4 113,589 - +1.0 113,599 - -0.0 113,606 + +0.8 113,606 + +1.5 113,607 - -1.3 113,627 - -1.0 113,627 - -0.4 113,627 - -1.1 113,627 - +1.1 113,751 + -0.0 113,751 + -3.5 113,751 + +0.1 113,850 + Xcc-8004.124.1 0.28 -0.0 113,850 + Xcc-8004.124.1 0.28 -1.0 113,850 + Xcc-8004.124.1 0.28 -0.8 113,850 + Xcc-8004.124.1 0.28 -2.2 113,851 - Xcc-8004.124.1 0.28 -2.5 113,851 - Xcc-8004.124.1 0.28 -0.7 113,860 + Xcc-8004.124.1 0.30 +0.6 113,860 + Xcc-8004.124.1 0.30 +0.0 113,860 + Xcc-8004.124.1 0.30 +0.7 113,860 + Xcc-8004.124.1 0.30 -0.4 113,861 - Xcc-8004.124.1 0.30 -0.0 113,966 + Xcc-8004.124.1 0.54 -1.2 113,966 + Xcc-8004.124.1 0.54 +0.6 113,967 - Xcc-8004.124.1 0.55 +0.9 113,967 - Xcc-8004.124.1 0.55 -0.7 113,967 - Xcc-8004.124.1 0.55 -0.1 113,988 - Xcc-8004.124.1 0.59 -0.9 114,000 + Xcc-8004.124.1 0.62 +0.6 114,000 + Xcc-8004.124.1 0.62 -1.5 114,000 + Xcc-8004.124.1 0.62 -0.3 114,000 + Xcc-8004.124.1 0.62 +0.2 114,001 - Xcc-8004.124.1 0.62 -0.3 114,051 + -1.0 114,051 + +0.8 114,051 + +2.0 114,051 + -0.5 114,052 - -0.5
Or see this region's nucleotide sequence