Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1199.1 and Xcc-8004.1200.1 are separated by 17 nucleotides Xcc-8004.1200.1 and Xcc-8004.1202.1 are separated by 2 nucleotides Xcc-8004.1202.1 and Xcc-8004.1203.1 are separated by 71 nucleotides Xcc-8004.1203.1 and Xcc-8004.1204.1 are separated by 128 nucleotides
Xcc-8004.1199.1: Xcc-8004.1199.1 - Citrate synthase (si) (EC 2.3.3.1), at 1,133,762 to 1,135,120
Xcc-8004.1199.1
Xcc-8004.1200.1: Xcc-8004.1200.1 - hypothetical protein, at 1,135,138 to 1,135,278
Xcc-8004.1200.1
Xcc-8004.1202.1: Xcc-8004.1202.1 - LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent, at 1,135,281 to 1,135,523
Xcc-8004.1202.1
Xcc-8004.1203.1: Xcc-8004.1203.1 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 1,135,595 to 1,136,533
Xcc-8004.1203.1
Xcc-8004.1204.1: Xcc-8004.1204.1 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 1,136,662 to 1,138,803
Xcc-8004.1204.1
Position (kb) 1135
1136
1137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1135.181 kb on + strand, within Xcc-8004.1200.1 at 1135.262 kb on + strand, within Xcc-8004.1200.1 at 1135.629 kb on + strand at 1135.630 kb on - strand at 1135.630 kb on - strand at 1135.630 kb on - strand at 1135.647 kb on + strand at 1135.648 kb on - strand at 1135.648 kb on - strand at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.819 kb on - strand, within Xcc-8004.1203.1 at 1135.825 kb on - strand, within Xcc-8004.1203.1 at 1135.878 kb on + strand, within Xcc-8004.1203.1 at 1135.878 kb on + strand, within Xcc-8004.1203.1 at 1135.999 kb on + strand, within Xcc-8004.1203.1 at 1136.047 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.338 kb on - strand, within Xcc-8004.1203.1 at 1136.338 kb on - strand, within Xcc-8004.1203.1 at 1136.833 kb on - strand at 1136.951 kb on + strand, within Xcc-8004.1204.1 at 1136.952 kb on - strand, within Xcc-8004.1204.1 at 1137.175 kb on + strand, within Xcc-8004.1204.1 at 1137.317 kb on + strand, within Xcc-8004.1204.1 at 1137.318 kb on - strand, within Xcc-8004.1204.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 1,135,181 + Xcc-8004.1200.1 0.30 +0.3 1,135,262 + Xcc-8004.1200.1 0.88 -1.1 1,135,629 + +1.3 1,135,630 - -1.3 1,135,630 - -0.4 1,135,630 - +2.5 1,135,647 + -0.9 1,135,648 - -0.5 1,135,648 - +1.3 1,135,818 + Xcc-8004.1203.1 0.24 +0.5 1,135,818 + Xcc-8004.1203.1 0.24 -0.5 1,135,818 + Xcc-8004.1203.1 0.24 -1.2 1,135,819 - Xcc-8004.1203.1 0.24 +0.2 1,135,825 - Xcc-8004.1203.1 0.24 +1.7 1,135,878 + Xcc-8004.1203.1 0.30 -0.7 1,135,878 + Xcc-8004.1203.1 0.30 -0.8 1,135,999 + Xcc-8004.1203.1 0.43 +0.9 1,136,047 + Xcc-8004.1203.1 0.48 -1.4 1,136,337 + Xcc-8004.1203.1 0.79 -0.9 1,136,337 + Xcc-8004.1203.1 0.79 -1.8 1,136,337 + Xcc-8004.1203.1 0.79 +0.5 1,136,337 + Xcc-8004.1203.1 0.79 +1.8 1,136,338 - Xcc-8004.1203.1 0.79 +1.4 1,136,338 - Xcc-8004.1203.1 0.79 -0.2 1,136,833 - +1.2 1,136,951 + Xcc-8004.1204.1 0.13 +0.0 1,136,952 - Xcc-8004.1204.1 0.14 -0.8 1,137,175 + Xcc-8004.1204.1 0.24 +0.4 1,137,317 + Xcc-8004.1204.1 0.31 +0.3 1,137,318 - Xcc-8004.1204.1 0.31 +0.7
Or see this region's nucleotide sequence