Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.923.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.922.1 and Xcc-8004.923.1 overlap by 4 nucleotidesXcc-8004.923.1 and Xcc-8004.924.1 are separated by 125 nucleotidesXcc-8004.924.1 and Xcc-8004.925.1 are separated by 83 nucleotides Xcc-8004.922.1: Xcc-8004.922.1 - FIG01210252: hypothetical protein, at 865,912 to 866,976 Xcc-8004.922.1 Xcc-8004.923.1: Xcc-8004.923.1 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 866,973 to 867,836 Xcc-8004.923.1 Xcc-8004.924.1: Xcc-8004.924.1 - FIG01200701: possible membrane protein, at 867,962 to 868,339 Xcc-8004.924.1 Xcc-8004.925.1: Xcc-8004.925.1 - FIG01210026: hypothetical protein, at 868,423 to 869,817 Xcc-8004.925.1 Position (kb) 866 867 868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 866.174 kb on + strand, within Xcc-8004.922.1at 866.175 kb on - strand, within Xcc-8004.922.1at 866.175 kb on - strand, within Xcc-8004.922.1at 866.287 kb on + strand, within Xcc-8004.922.1at 866.287 kb on + strand, within Xcc-8004.922.1at 866.287 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.347 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.444 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.533 kb on + strand, within Xcc-8004.922.1at 866.593 kb on + strand, within Xcc-8004.922.1at 866.593 kb on + strand, within Xcc-8004.922.1at 866.593 kb on + strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.701 kb on + strand, within Xcc-8004.922.1at 866.701 kb on + strand, within Xcc-8004.922.1at 866.701 kb on + strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.891 kb on - strandat 867.046 kb on + strandat 867.046 kb on + strandat 867.047 kb on - strandat 867.047 kb on - strandat 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.247 kb on - strand, within Xcc-8004.923.1at 867.247 kb on - strand, within Xcc-8004.923.1at 867.402 kb on + strand, within Xcc-8004.923.1at 867.402 kb on + strand, within Xcc-8004.923.1at 867.403 kb on - strand, within Xcc-8004.923.1at 867.534 kb on + strand, within Xcc-8004.923.1at 867.534 kb on + strand, within Xcc-8004.923.1at 867.534 kb on + strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.564 kb on + strand, within Xcc-8004.923.1at 867.564 kb on + strand, within Xcc-8004.923.1at 867.891 kb on + strandat 867.891 kb on + strandat 867.892 kb on - strandat 867.892 kb on - strandat 867.892 kb on - strandat 867.892 kb on - strandat 867.905 kb on + strandat 867.905 kb on + strandat 867.906 kb on - strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.959 kb on - strandat 867.959 kb on - strandat 867.959 kb on - strandat 867.959 kb on - strandat 867.988 kb on + strandat 867.988 kb on + strandat 867.988 kb on + strandat 867.988 kb on + strandat 867.988 kb on + strandat 867.988 kb on + strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 868.040 kb on + strand, within Xcc-8004.924.1at 868.055 kb on + strand, within Xcc-8004.924.1at 868.411 kb on + strandat 868.411 kb on + strandat 868.411 kb on + strandat 868.412 kb on - strandat 868.412 kb on - strandat 868.412 kb on - strandat 868.412 kb on - strandat 868.689 kb on + strand, within Xcc-8004.925.1at 868.689 kb on + strand, within Xcc-8004.925.1at 868.689 kb on + strand, within Xcc-8004.925.1at 868.689 kb on + strand, within Xcc-8004.925.1at 868.819 kb on + strand, within Xcc-8004.925.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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866,174 + Xcc-8004.922.1 0.25 -0.2
866,175 - Xcc-8004.922.1 0.25 +0.2
866,175 - Xcc-8004.922.1 0.25 +1.3
866,287 + Xcc-8004.922.1 0.35 +0.6
866,287 + Xcc-8004.922.1 0.35 -0.6
866,287 + Xcc-8004.922.1 0.35 +3.9
866,330 + Xcc-8004.922.1 0.39 -2.1
866,330 + Xcc-8004.922.1 0.39 +2.1
866,330 + Xcc-8004.922.1 0.39 -2.0
866,330 + Xcc-8004.922.1 0.39 +1.3
866,330 + Xcc-8004.922.1 0.39 -2.6
866,330 + Xcc-8004.922.1 0.39 -1.6
866,330 + Xcc-8004.922.1 0.39 -3.8
866,330 + Xcc-8004.922.1 0.39 -0.0
866,330 + Xcc-8004.922.1 0.39 +0.2
866,330 + Xcc-8004.922.1 0.39 +1.4
866,330 + Xcc-8004.922.1 0.39 +1.4
866,330 + Xcc-8004.922.1 0.39 -0.4
866,330 + Xcc-8004.922.1 0.39 +1.7
866,331 - Xcc-8004.922.1 0.39 +1.7
866,331 - Xcc-8004.922.1 0.39 +0.5
866,331 - Xcc-8004.922.1 0.39 -0.5
866,331 - Xcc-8004.922.1 0.39 -1.1
866,331 - Xcc-8004.922.1 0.39 +1.0
866,331 - Xcc-8004.922.1 0.39 +2.0
866,331 - Xcc-8004.922.1 0.39 -4.1
866,331 - Xcc-8004.922.1 0.39 -1.5
866,331 - Xcc-8004.922.1 0.39 -1.2
866,331 - Xcc-8004.922.1 0.39 +0.6
866,331 - Xcc-8004.922.1 0.39 -0.2
866,331 - Xcc-8004.922.1 0.39 +2.2
866,331 - Xcc-8004.922.1 0.39 +0.1
866,331 - Xcc-8004.922.1 0.39 -3.6
866,332 + Xcc-8004.922.1 0.39 +0.0
866,332 + Xcc-8004.922.1 0.39 -0.6
866,332 + Xcc-8004.922.1 0.39 -0.3
866,332 + Xcc-8004.922.1 0.39 +0.1
866,332 + Xcc-8004.922.1 0.39 -1.7
866,332 + Xcc-8004.922.1 0.39 +1.2
866,332 + Xcc-8004.922.1 0.39 -1.6
866,333 - Xcc-8004.922.1 0.40 +0.8
866,333 - Xcc-8004.922.1 0.40 +0.1
866,333 - Xcc-8004.922.1 0.40 -1.0
866,333 - Xcc-8004.922.1 0.40 -3.3
866,333 - Xcc-8004.922.1 0.40 -0.7
866,347 + Xcc-8004.922.1 0.41 +0.6
866,356 + Xcc-8004.922.1 0.42 -1.2
866,356 + Xcc-8004.922.1 0.42 +0.1
866,356 + Xcc-8004.922.1 0.42 -2.1
866,356 + Xcc-8004.922.1 0.42 +0.5
866,357 - Xcc-8004.922.1 0.42 +0.1
866,357 - Xcc-8004.922.1 0.42 -1.0
866,357 - Xcc-8004.922.1 0.42 -0.4
866,357 - Xcc-8004.922.1 0.42 +1.4
866,444 + Xcc-8004.922.1 0.50 +0.9
866,459 + Xcc-8004.922.1 0.51 +0.0
866,459 + Xcc-8004.922.1 0.51 +0.8
866,459 + Xcc-8004.922.1 0.51 +2.8
866,459 + Xcc-8004.922.1 0.51 -0.6
866,459 + Xcc-8004.922.1 0.51 +0.7
866,460 - Xcc-8004.922.1 0.51 -2.1
866,460 - Xcc-8004.922.1 0.51 +1.4
866,460 - Xcc-8004.922.1 0.51 -1.2
866,460 - Xcc-8004.922.1 0.51 +0.3
866,533 + Xcc-8004.922.1 0.58 -0.1
866,593 + Xcc-8004.922.1 0.64 -1.5
866,593 + Xcc-8004.922.1 0.64 -2.2
866,593 + Xcc-8004.922.1 0.64 +1.2
866,594 - Xcc-8004.922.1 0.64 +1.8
866,594 - Xcc-8004.922.1 0.64 -0.5
866,594 - Xcc-8004.922.1 0.64 +1.7
866,594 - Xcc-8004.922.1 0.64 +0.2
866,701 + Xcc-8004.922.1 0.74 -0.1
866,701 + Xcc-8004.922.1 0.74 +1.3
866,701 + Xcc-8004.922.1 0.74 +0.3
866,702 - Xcc-8004.922.1 0.74 -0.4
866,702 - Xcc-8004.922.1 0.74 -1.0
866,702 - Xcc-8004.922.1 0.74 -1.3
866,702 - Xcc-8004.922.1 0.74 -1.6
866,702 - Xcc-8004.922.1 0.74 +0.1
866,890 + +1.8
866,890 + -1.4
866,890 + +0.3
866,890 + -0.8
866,890 + +1.3
866,890 + +1.7
866,891 - +0.3
867,046 + +1.6
867,046 + +0.9
867,047 - -2.6
867,047 - +3.9
867,175 - Xcc-8004.923.1 0.23 -1.6
867,175 - Xcc-8004.923.1 0.23 +0.5
867,175 - Xcc-8004.923.1 0.23 +1.6
867,175 - Xcc-8004.923.1 0.23 -0.7
867,175 - Xcc-8004.923.1 0.23 -2.0
867,175 - Xcc-8004.923.1 0.23 +1.0
867,175 - Xcc-8004.923.1 0.23 -1.4
867,247 - Xcc-8004.923.1 0.32 +1.5
867,247 - Xcc-8004.923.1 0.32 +0.7
867,402 + Xcc-8004.923.1 0.50 -0.2
867,402 + Xcc-8004.923.1 0.50 -1.7
867,403 - Xcc-8004.923.1 0.50 +0.3
867,534 + Xcc-8004.923.1 0.65 -1.1
867,534 + Xcc-8004.923.1 0.65 +0.1
867,534 + Xcc-8004.923.1 0.65 -1.2
867,535 - Xcc-8004.923.1 0.65 +1.6
867,535 - Xcc-8004.923.1 0.65 -3.9
867,535 - Xcc-8004.923.1 0.65 +1.7
867,535 - Xcc-8004.923.1 0.65 -2.7
867,564 + Xcc-8004.923.1 0.68 -2.3
867,564 + Xcc-8004.923.1 0.68 -0.5
867,891 + +0.2
867,891 + -3.8
867,892 - -3.6
867,892 - -1.1
867,892 - -2.3
867,892 - +0.7
867,905 + -3.1
867,905 + +0.1
867,906 - -3.0
867,958 + -0.6
867,958 + -2.7
867,958 + +2.9
867,958 + +2.1
867,958 + -1.4
867,958 + -0.0
867,958 + -0.5
867,958 + -0.9
867,959 - +1.1
867,959 - -0.2
867,959 - -1.4
867,959 - -1.6
867,988 + +2.1
867,988 + -0.9
867,988 + -0.3
867,988 + +0.8
867,988 + -1.1
867,988 + +0.2
867,989 - +0.6
867,989 - -0.5
867,989 - +2.0
867,989 - +1.5
867,989 - -0.9
867,989 - +1.3
867,989 - -1.3
867,989 - -3.7
867,989 - -2.3
867,989 - -2.3
867,989 - +0.9
868,040 + Xcc-8004.924.1 0.21 +0.2
868,055 + Xcc-8004.924.1 0.25 -0.6
868,411 + -0.6
868,411 + -2.0
868,411 + -0.2
868,412 - +1.1
868,412 - +0.8
868,412 - +0.2
868,412 - -0.3
868,689 + Xcc-8004.925.1 0.19 +2.1
868,689 + Xcc-8004.925.1 0.19 -1.6
868,689 + Xcc-8004.925.1 0.19 -1.5
868,689 + Xcc-8004.925.1 0.19 +0.8
868,819 + Xcc-8004.925.1 0.28 -0.8

Or see this region's nucleotide sequence