Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.713.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.712.1 and Xcc-8004.713.1 overlap by 4 nucleotidesXcc-8004.713.1 and Xcc-8004.714.1 are separated by 3 nucleotidesXcc-8004.714.1 and Xcc-8004.715.1 are separated by 61 nucleotidesXcc-8004.715.1 and Xcc-8004.716.1 are separated by 12 nucleotides Xcc-8004.712.1: Xcc-8004.712.1 - Gluconolactonase (EC 3.1.1.17), at 663,334 to 664,254 Xcc-8004.712.1 Xcc-8004.713.1: Xcc-8004.713.1 - FIG01210186: hypothetical protein, at 664,251 to 664,769 Xcc-8004.713.1 Xcc-8004.714.1: Xcc-8004.714.1 - hypothetical protein, at 664,773 to 665,183 Xcc-8004.714.1 Xcc-8004.715.1: Xcc-8004.715.1 - RNA polymerase sigma factor, at 665,245 to 665,754 Xcc-8004.715.1 Xcc-8004.716.1: Xcc-8004.716.1 - Fe2+-dicitrate sensor, membrane component, at 665,767 to 666,792 Xcc-8004.716.1 Position (kb) 664 665Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 663.310 kb on + strandat 663.467 kb on - strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.644 kb on + strand, within Xcc-8004.712.1at 663.645 kb on - strand, within Xcc-8004.712.1at 663.645 kb on - strand, within Xcc-8004.712.1at 663.645 kb on - strand, within Xcc-8004.712.1at 663.645 kb on - strand, within Xcc-8004.712.1at 663.645 kb on - strand, within Xcc-8004.712.1at 663.645 kb on - strand, within Xcc-8004.712.1at 663.645 kb on - strand, within Xcc-8004.712.1at 663.737 kb on + strand, within Xcc-8004.712.1at 664.018 kb on + strand, within Xcc-8004.712.1at 664.018 kb on + strand, within Xcc-8004.712.1at 664.018 kb on + strand, within Xcc-8004.712.1at 664.018 kb on + strand, within Xcc-8004.712.1at 664.018 kb on + strand, within Xcc-8004.712.1at 664.018 kb on + strand, within Xcc-8004.712.1at 664.018 kb on + strand, within Xcc-8004.712.1at 664.018 kb on + strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.019 kb on - strand, within Xcc-8004.712.1at 664.130 kb on + strand, within Xcc-8004.712.1at 664.131 kb on - strand, within Xcc-8004.712.1at 664.686 kb on - strand, within Xcc-8004.713.1at 664.834 kb on + strand, within Xcc-8004.714.1at 664.834 kb on + strand, within Xcc-8004.714.1at 664.834 kb on + strand, within Xcc-8004.714.1at 664.835 kb on - strand, within Xcc-8004.714.1at 664.835 kb on - strand, within Xcc-8004.714.1at 664.835 kb on - strand, within Xcc-8004.714.1at 664.835 kb on - strand, within Xcc-8004.714.1at 664.835 kb on - strand, within Xcc-8004.714.1at 665.041 kb on + strand, within Xcc-8004.714.1at 665.041 kb on + strand, within Xcc-8004.714.1at 665.041 kb on + strand, within Xcc-8004.714.1at 665.176 kb on + strandat 665.290 kb on + strandat 665.290 kb on + strandat 665.290 kb on + strandat 665.290 kb on + strandat 665.291 kb on - strandat 665.291 kb on - strandat 665.291 kb on - strandat 665.291 kb on - strandat 665.291 kb on - strandat 665.291 kb on - strandat 665.291 kb on - strandat 665.312 kb on + strand, within Xcc-8004.715.1at 665.497 kb on + strand, within Xcc-8004.715.1at 665.498 kb on - strand, within Xcc-8004.715.1at 665.498 kb on - strand, within Xcc-8004.715.1at 665.498 kb on - strand, within Xcc-8004.715.1at 665.656 kb on + strand, within Xcc-8004.715.1at 665.656 kb on + strand, within Xcc-8004.715.1at 665.707 kb on + strandat 665.707 kb on + strandat 665.707 kb on + strandat 665.707 kb on + strandat 665.708 kb on - strandat 665.708 kb on - strandat 665.708 kb on - strandat 665.708 kb on - strandat 665.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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663,310 + +0.1
663,467 - Xcc-8004.712.1 0.14 -0.9
663,644 + Xcc-8004.712.1 0.34 -1.3
663,644 + Xcc-8004.712.1 0.34 -0.2
663,644 + Xcc-8004.712.1 0.34 -1.1
663,644 + Xcc-8004.712.1 0.34 -1.2
663,644 + Xcc-8004.712.1 0.34 -2.5
663,644 + Xcc-8004.712.1 0.34 -2.1
663,644 + Xcc-8004.712.1 0.34 -1.1
663,644 + Xcc-8004.712.1 0.34 -0.3
663,644 + Xcc-8004.712.1 0.34 -0.6
663,644 + Xcc-8004.712.1 0.34 -1.0
663,644 + Xcc-8004.712.1 0.34 +1.7
663,644 + Xcc-8004.712.1 0.34 -0.1
663,645 - Xcc-8004.712.1 0.34 +2.5
663,645 - Xcc-8004.712.1 0.34 -2.3
663,645 - Xcc-8004.712.1 0.34 -0.9
663,645 - Xcc-8004.712.1 0.34 +0.8
663,645 - Xcc-8004.712.1 0.34 +0.3
663,645 - Xcc-8004.712.1 0.34 -0.0
663,645 - Xcc-8004.712.1 0.34 -2.0
663,737 + Xcc-8004.712.1 0.44 +2.0
664,018 + Xcc-8004.712.1 0.74 +0.8
664,018 + Xcc-8004.712.1 0.74 -1.7
664,018 + Xcc-8004.712.1 0.74 -1.2
664,018 + Xcc-8004.712.1 0.74 -1.5
664,018 + Xcc-8004.712.1 0.74 -1.9
664,018 + Xcc-8004.712.1 0.74 +1.3
664,018 + Xcc-8004.712.1 0.74 -1.9
664,018 + Xcc-8004.712.1 0.74 +1.7
664,019 - Xcc-8004.712.1 0.74 +0.7
664,019 - Xcc-8004.712.1 0.74 +0.4
664,019 - Xcc-8004.712.1 0.74 +0.7
664,019 - Xcc-8004.712.1 0.74 +2.7
664,019 - Xcc-8004.712.1 0.74 -0.9
664,019 - Xcc-8004.712.1 0.74 -0.3
664,019 - Xcc-8004.712.1 0.74 -0.7
664,019 - Xcc-8004.712.1 0.74 -2.2
664,019 - Xcc-8004.712.1 0.74 -0.2
664,019 - Xcc-8004.712.1 0.74 -1.3
664,019 - Xcc-8004.712.1 0.74 -3.5
664,019 - Xcc-8004.712.1 0.74 +0.4
664,130 + Xcc-8004.712.1 0.86 +2.9
664,131 - Xcc-8004.712.1 0.87 +1.7
664,686 - Xcc-8004.713.1 0.84 -2.2
664,834 + Xcc-8004.714.1 0.15 -0.3
664,834 + Xcc-8004.714.1 0.15 -1.9
664,834 + Xcc-8004.714.1 0.15 +1.7
664,835 - Xcc-8004.714.1 0.15 +2.4
664,835 - Xcc-8004.714.1 0.15 -1.1
664,835 - Xcc-8004.714.1 0.15 -2.0
664,835 - Xcc-8004.714.1 0.15 -0.7
664,835 - Xcc-8004.714.1 0.15 +0.1
665,041 + Xcc-8004.714.1 0.65 -2.4
665,041 + Xcc-8004.714.1 0.65 -1.5
665,041 + Xcc-8004.714.1 0.65 -0.9
665,176 + +3.2
665,290 + +0.1
665,290 + +0.5
665,290 + -3.1
665,290 + -0.1
665,291 - +0.9
665,291 - +0.1
665,291 - +0.8
665,291 - -0.8
665,291 - +0.2
665,291 - +1.0
665,291 - -0.9
665,312 + Xcc-8004.715.1 0.13 +0.7
665,497 + Xcc-8004.715.1 0.49 -0.4
665,498 - Xcc-8004.715.1 0.50 +0.5
665,498 - Xcc-8004.715.1 0.50 +1.7
665,498 - Xcc-8004.715.1 0.50 -0.7
665,656 + Xcc-8004.715.1 0.81 -2.4
665,656 + Xcc-8004.715.1 0.81 -1.1
665,707 + +0.4
665,707 + -2.2
665,707 + +2.3
665,707 + +0.9
665,708 - -1.8
665,708 - -3.0
665,708 - +1.7
665,708 - +0.1
665,708 - -1.3

Or see this region's nucleotide sequence