Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5039.1 and Xcc-8004.5040.1 are separated by 66 nucleotides Xcc-8004.5040.1 and Xcc-8004.5041.1 overlap by 4 nucleotides Xcc-8004.5041.1 and Xcc-8004.5042.1 overlap by 41 nucleotides
Xcc-8004.5039.1: Xcc-8004.5039.1 - FIG032621: Hydrolase, alpha/beta hydrolase fold family, at 4,779,972 to 4,781,522
Xcc-8004.5039.1
Xcc-8004.5040.1: Xcc-8004.5040.1 - Transcriptional regulator, at 4,781,589 to 4,781,789
Xcc-8004.5040.1
Xcc-8004.5041.1: Xcc-8004.5041.1 - FIG01211213: hypothetical protein, at 4,781,786 to 4,782,373
Xcc-8004.5041.1
Xcc-8004.5042.1: Xcc-8004.5042.1 - hypothetical protein, at 4,782,333 to 4,782,518
Xcc-8004.5042.1
Position (kb) 4781
4782 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4780.832 kb on - strand, within Xcc-8004.5039.1 at 4780.850 kb on + strand, within Xcc-8004.5039.1 at 4780.942 kb on + strand, within Xcc-8004.5039.1 at 4780.942 kb on + strand, within Xcc-8004.5039.1 at 4780.942 kb on + strand, within Xcc-8004.5039.1 at 4780.943 kb on - strand, within Xcc-8004.5039.1 at 4780.965 kb on + strand, within Xcc-8004.5039.1 at 4780.990 kb on + strand, within Xcc-8004.5039.1 at 4781.109 kb on + strand, within Xcc-8004.5039.1 at 4781.499 kb on + strand at 4781.499 kb on + strand at 4781.500 kb on - strand at 4781.507 kb on + strand at 4781.508 kb on - strand at 4781.677 kb on + strand, within Xcc-8004.5040.1 at 4781.793 kb on + strand at 4781.827 kb on - strand at 4781.827 kb on - strand at 4781.827 kb on - strand at 4781.919 kb on + strand, within Xcc-8004.5041.1 at 4781.919 kb on + strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4782.119 kb on + strand, within Xcc-8004.5041.1 at 4782.120 kb on - strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.153 kb on + strand, within Xcc-8004.5041.1 at 4782.247 kb on + strand, within Xcc-8004.5041.1 at 4782.270 kb on + strand, within Xcc-8004.5041.1 at 4782.271 kb on - strand, within Xcc-8004.5041.1 at 4782.271 kb on - strand, within Xcc-8004.5041.1 at 4782.297 kb on + strand, within Xcc-8004.5041.1 at 4782.561 kb on + strand at 4782.561 kb on + strand at 4782.562 kb on - strand at 4782.562 kb on - strand at 4782.725 kb on + strand at 4782.725 kb on + strand at 4782.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,780,832 - Xcc-8004.5039.1 0.55 -2.1 4,780,850 + Xcc-8004.5039.1 0.57 -0.3 4,780,942 + Xcc-8004.5039.1 0.63 -0.6 4,780,942 + Xcc-8004.5039.1 0.63 +0.4 4,780,942 + Xcc-8004.5039.1 0.63 -0.6 4,780,943 - Xcc-8004.5039.1 0.63 +2.8 4,780,965 + Xcc-8004.5039.1 0.64 -3.7 4,780,990 + Xcc-8004.5039.1 0.66 +2.1 4,781,109 + Xcc-8004.5039.1 0.73 -0.3 4,781,499 + -0.9 4,781,499 + +2.3 4,781,500 - -2.1 4,781,507 + -1.1 4,781,508 - +0.7 4,781,677 + Xcc-8004.5040.1 0.44 +2.2 4,781,793 + +0.5 4,781,827 - -2.4 4,781,827 - -0.5 4,781,827 - +0.1 4,781,919 + Xcc-8004.5041.1 0.23 +3.5 4,781,919 + Xcc-8004.5041.1 0.23 -1.3 4,781,920 - Xcc-8004.5041.1 0.23 +2.0 4,781,920 - Xcc-8004.5041.1 0.23 +0.5 4,781,920 - Xcc-8004.5041.1 0.23 -2.1 4,781,920 - Xcc-8004.5041.1 0.23 -1.2 4,781,920 - Xcc-8004.5041.1 0.23 +0.0 4,781,920 - Xcc-8004.5041.1 0.23 -4.1 4,781,920 - Xcc-8004.5041.1 0.23 -1.5 4,782,119 + Xcc-8004.5041.1 0.57 +1.1 4,782,120 - Xcc-8004.5041.1 0.57 -0.3 4,782,123 + Xcc-8004.5041.1 0.57 -0.6 4,782,123 + Xcc-8004.5041.1 0.57 -1.8 4,782,123 + Xcc-8004.5041.1 0.57 +1.1 4,782,123 + Xcc-8004.5041.1 0.57 +2.6 4,782,123 + Xcc-8004.5041.1 0.57 -0.6 4,782,123 + Xcc-8004.5041.1 0.57 +1.4 4,782,123 + Xcc-8004.5041.1 0.57 +2.1 4,782,124 - Xcc-8004.5041.1 0.57 -0.2 4,782,124 - Xcc-8004.5041.1 0.57 -1.8 4,782,124 - Xcc-8004.5041.1 0.57 +2.6 4,782,124 - Xcc-8004.5041.1 0.57 +1.6 4,782,124 - Xcc-8004.5041.1 0.57 -1.4 4,782,124 - Xcc-8004.5041.1 0.57 -1.8 4,782,124 - Xcc-8004.5041.1 0.57 +0.2 4,782,124 - Xcc-8004.5041.1 0.57 +3.3 4,782,124 - Xcc-8004.5041.1 0.57 -2.0 4,782,124 - Xcc-8004.5041.1 0.57 +1.7 4,782,153 + Xcc-8004.5041.1 0.62 +1.7 4,782,247 + Xcc-8004.5041.1 0.78 +1.4 4,782,270 + Xcc-8004.5041.1 0.82 -0.7 4,782,271 - Xcc-8004.5041.1 0.82 +0.1 4,782,271 - Xcc-8004.5041.1 0.82 -0.0 4,782,297 + Xcc-8004.5041.1 0.87 -0.9 4,782,561 + -0.3 4,782,561 + -0.1 4,782,562 - +1.7 4,782,562 - -0.7 4,782,725 + -0.9 4,782,725 + +0.0 4,782,726 - -2.5
Or see this region's nucleotide sequence