Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.504.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.502.1 and Xcc-8004.503.1 are separated by 31 nucleotidesXcc-8004.503.1 and Xcc-8004.504.1 are separated by 2 nucleotidesXcc-8004.504.1 and Xcc-8004.505.1 are separated by 99 nucleotides Xcc-8004.502.1: Xcc-8004.502.1 - Biotin synthesis protein BioH, at 459,934 to 460,695 Xcc-8004.502.1 Xcc-8004.503.1: Xcc-8004.503.1 - FIG01209720: hypothetical protein, at 460,727 to 461,092 Xcc-8004.503.1 Xcc-8004.504.1: Xcc-8004.504.1 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 461,095 to 462,300 Xcc-8004.504.1 Xcc-8004.505.1: Xcc-8004.505.1 - Biotin synthase (EC 2.8.1.6), at 462,400 to 463,434 Xcc-8004.505.1 Position (kb) 461 462 463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 460.301 kb on + strand, within Xcc-8004.502.1at 460.536 kb on + strand, within Xcc-8004.502.1at 460.536 kb on + strand, within Xcc-8004.502.1at 460.537 kb on - strand, within Xcc-8004.502.1at 460.537 kb on - strand, within Xcc-8004.502.1at 460.537 kb on - strand, within Xcc-8004.502.1at 460.590 kb on - strand, within Xcc-8004.502.1at 460.689 kb on + strandat 460.690 kb on - strandat 460.690 kb on - strandat 460.690 kb on - strandat 460.690 kb on - strandat 460.701 kb on + strandat 460.732 kb on + strandat 460.732 kb on + strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.908 kb on + strand, within Xcc-8004.503.1at 460.908 kb on + strand, within Xcc-8004.503.1at 460.908 kb on + strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 461.037 kb on + strand, within Xcc-8004.503.1at 461.037 kb on + strand, within Xcc-8004.503.1at 461.037 kb on + strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.092 kb on + strandat 461.092 kb on + strandat 461.092 kb on + strandat 461.092 kb on + strandat 461.093 kb on - strandat 461.093 kb on - strandat 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.495 kb on + strand, within Xcc-8004.504.1at 461.496 kb on - strand, within Xcc-8004.504.1at 461.558 kb on + strand, within Xcc-8004.504.1at 461.684 kb on + strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 462.146 kb on + strand, within Xcc-8004.504.1at 462.147 kb on - strand, within Xcc-8004.504.1at 462.147 kb on - strand, within Xcc-8004.504.1at 462.336 kb on - strandat 462.336 kb on - strandat 462.381 kb on + strandat 462.381 kb on + strandat 462.381 kb on + strandat 462.381 kb on + strandat 462.381 kb on + strandat 462.382 kb on - strandat 462.382 kb on - strandat 462.382 kb on - strandat 462.572 kb on + strand, within Xcc-8004.505.1at 462.572 kb on + strand, within Xcc-8004.505.1at 462.947 kb on + strand, within Xcc-8004.505.1at 462.948 kb on - strand, within Xcc-8004.505.1at 462.948 kb on - strand, within Xcc-8004.505.1at 462.948 kb on - strand, within Xcc-8004.505.1at 462.948 kb on - strand, within Xcc-8004.505.1at 462.980 kb on + strand, within Xcc-8004.505.1at 462.980 kb on + strand, within Xcc-8004.505.1at 462.980 kb on + strand, within Xcc-8004.505.1at 462.980 kb on + strand, within Xcc-8004.505.1at 462.980 kb on + strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.983 kb on + strand, within Xcc-8004.505.1at 462.983 kb on + strand, within Xcc-8004.505.1at 462.983 kb on + strand, within Xcc-8004.505.1at 462.983 kb on + strand, within Xcc-8004.505.1at 462.984 kb on - strand, within Xcc-8004.505.1at 462.984 kb on - strand, within Xcc-8004.505.1at 462.984 kb on - strand, within Xcc-8004.505.1at 463.232 kb on + strand, within Xcc-8004.505.1at 463.233 kb on - strand, within Xcc-8004.505.1at 463.233 kb on - strand, within Xcc-8004.505.1at 463.254 kb on - strand, within Xcc-8004.505.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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460,301 + Xcc-8004.502.1 0.48 -1.8
460,536 + Xcc-8004.502.1 0.79 -0.1
460,536 + Xcc-8004.502.1 0.79 -0.7
460,537 - Xcc-8004.502.1 0.79 -1.9
460,537 - Xcc-8004.502.1 0.79 +0.5
460,537 - Xcc-8004.502.1 0.79 -0.9
460,590 - Xcc-8004.502.1 0.86 -2.5
460,689 + -0.6
460,690 - -0.3
460,690 - -1.3
460,690 - +2.5
460,690 - -1.2
460,701 + +3.3
460,732 + -0.5
460,732 + -0.2
460,733 - -1.6
460,733 - +0.5
460,733 - -1.2
460,733 - -0.9
460,733 - -1.6
460,733 - -2.5
460,733 - -1.1
460,908 + Xcc-8004.503.1 0.49 -0.5
460,908 + Xcc-8004.503.1 0.49 +0.3
460,908 + Xcc-8004.503.1 0.49 +1.7
460,909 - Xcc-8004.503.1 0.50 +4.7
460,909 - Xcc-8004.503.1 0.50 +0.2
460,909 - Xcc-8004.503.1 0.50 -0.2
460,909 - Xcc-8004.503.1 0.50 +0.8
460,909 - Xcc-8004.503.1 0.50 +0.0
460,909 - Xcc-8004.503.1 0.50 -0.3
460,909 - Xcc-8004.503.1 0.50 -1.8
461,037 + Xcc-8004.503.1 0.85 +1.3
461,037 + Xcc-8004.503.1 0.85 -1.0
461,037 + Xcc-8004.503.1 0.85 +0.5
461,038 - Xcc-8004.503.1 0.85 -0.6
461,038 - Xcc-8004.503.1 0.85 -2.5
461,038 - Xcc-8004.503.1 0.85 +0.3
461,038 - Xcc-8004.503.1 0.85 -2.6
461,038 - Xcc-8004.503.1 0.85 -0.1
461,038 - Xcc-8004.503.1 0.85 +1.5
461,092 + +1.1
461,092 + +1.7
461,092 + +0.8
461,092 + -0.6
461,093 - -2.1
461,093 - +3.8
461,489 + Xcc-8004.504.1 0.33 -2.3
461,489 + Xcc-8004.504.1 0.33 +0.7
461,489 + Xcc-8004.504.1 0.33 -0.9
461,489 + Xcc-8004.504.1 0.33 -2.9
461,489 + Xcc-8004.504.1 0.33 -2.6
461,489 + Xcc-8004.504.1 0.33 +1.4
461,489 + Xcc-8004.504.1 0.33 -1.1
461,489 + Xcc-8004.504.1 0.33 -1.1
461,489 + Xcc-8004.504.1 0.33 -1.4
461,490 - Xcc-8004.504.1 0.33 -0.8
461,490 - Xcc-8004.504.1 0.33 -2.7
461,490 - Xcc-8004.504.1 0.33 -0.8
461,490 - Xcc-8004.504.1 0.33 -0.7
461,495 + Xcc-8004.504.1 0.33 +0.7
461,496 - Xcc-8004.504.1 0.33 -2.5
461,558 + Xcc-8004.504.1 0.38 -1.6
461,684 + Xcc-8004.504.1 0.49 -1.7
461,685 - Xcc-8004.504.1 0.49 -3.9
461,685 - Xcc-8004.504.1 0.49 +0.1
461,685 - Xcc-8004.504.1 0.49 -0.8
461,685 - Xcc-8004.504.1 0.49 -2.5
462,146 + Xcc-8004.504.1 0.87 -1.5
462,147 - Xcc-8004.504.1 0.87 +1.7
462,147 - Xcc-8004.504.1 0.87 -1.2
462,336 - +0.7
462,336 - +0.4
462,381 + -2.1
462,381 + -3.0
462,381 + +2.2
462,381 + -0.1
462,381 + +2.5
462,382 - -1.4
462,382 - -0.3
462,382 - +2.9
462,572 + Xcc-8004.505.1 0.17 -3.1
462,572 + Xcc-8004.505.1 0.17 +0.7
462,947 + Xcc-8004.505.1 0.53 -0.3
462,948 - Xcc-8004.505.1 0.53 -2.2
462,948 - Xcc-8004.505.1 0.53 -1.5
462,948 - Xcc-8004.505.1 0.53 -2.3
462,948 - Xcc-8004.505.1 0.53 -4.1
462,980 + Xcc-8004.505.1 0.56 -1.8
462,980 + Xcc-8004.505.1 0.56 -2.2
462,980 + Xcc-8004.505.1 0.56 -2.1
462,980 + Xcc-8004.505.1 0.56 -2.3
462,980 + Xcc-8004.505.1 0.56 -4.2
462,981 - Xcc-8004.505.1 0.56 -2.9
462,981 - Xcc-8004.505.1 0.56 -0.9
462,981 - Xcc-8004.505.1 0.56 -4.3
462,981 - Xcc-8004.505.1 0.56 -3.0
462,981 - Xcc-8004.505.1 0.56 -3.4
462,981 - Xcc-8004.505.1 0.56 -2.7
462,983 + Xcc-8004.505.1 0.56 -3.8
462,983 + Xcc-8004.505.1 0.56 +2.1
462,983 + Xcc-8004.505.1 0.56 -2.5
462,983 + Xcc-8004.505.1 0.56 -3.0
462,984 - Xcc-8004.505.1 0.56 -3.8
462,984 - Xcc-8004.505.1 0.56 -0.6
462,984 - Xcc-8004.505.1 0.56 -1.3
463,232 + Xcc-8004.505.1 0.80 -2.6
463,233 - Xcc-8004.505.1 0.80 -2.9
463,233 - Xcc-8004.505.1 0.80 -1.7
463,254 - Xcc-8004.505.1 0.83 -1.5

Or see this region's nucleotide sequence