Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4913.1 and Xcc-8004.4915.1 are separated by 190 nucleotides Xcc-8004.4915.1 and Xcc-8004.4916.1 are separated by 15 nucleotides Xcc-8004.4916.1 and Xcc-8004.4917.1 are separated by 333 nucleotides Xcc-8004.4917.1 and Xcc-8004.4918.1 are separated by 10 nucleotides
Xcc-8004.4913.1: Xcc-8004.4913.1 - Nitrogen regulatory protein P-II, at 4,675,473 to 4,675,811
Xcc-8004.4913.1
Xcc-8004.4915.1: Xcc-8004.4915.1 - FIG01211043: hypothetical protein, at 4,676,002 to 4,676,274
Xcc-8004.4915.1
Xcc-8004.4916.1: Xcc-8004.4916.1 - MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein, at 4,676,290 to 4,677,810
Xcc-8004.4916.1
Xcc-8004.4917.1: Xcc-8004.4917.1 - outer membrane lipoprotein Blc, at 4,678,144 to 4,678,701
Xcc-8004.4917.1
Xcc-8004.4918.1: Xcc-8004.4918.1 - FIG01211357: hypothetical protein, at 4,678,712 to 4,678,888
Xcc-8004.4918.1
Position (kb) 4676
4677
4678 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4675.300 kb on + strand at 4675.301 kb on - strand at 4675.301 kb on - strand at 4675.301 kb on - strand at 4675.303 kb on + strand at 4675.303 kb on + strand at 4675.303 kb on + strand at 4675.303 kb on + strand at 4675.304 kb on - strand at 4675.304 kb on - strand at 4675.304 kb on - strand at 4675.304 kb on - strand at 4675.304 kb on - strand at 4675.433 kb on + strand at 4675.433 kb on + strand at 4675.433 kb on + strand at 4675.434 kb on - strand at 4675.434 kb on - strand at 4675.434 kb on - strand at 4675.434 kb on - strand at 4675.474 kb on + strand at 4675.474 kb on + strand at 4675.475 kb on - strand at 4675.475 kb on - strand at 4675.475 kb on - strand at 4675.475 kb on - strand at 4675.475 kb on - strand at 4675.531 kb on + strand, within Xcc-8004.4913.1 at 4675.532 kb on - strand, within Xcc-8004.4913.1 at 4675.660 kb on + strand, within Xcc-8004.4913.1 at 4675.660 kb on + strand, within Xcc-8004.4913.1 at 4675.660 kb on + strand, within Xcc-8004.4913.1 at 4675.660 kb on + strand, within Xcc-8004.4913.1 at 4675.660 kb on + strand, within Xcc-8004.4913.1 at 4675.661 kb on - strand, within Xcc-8004.4913.1 at 4675.661 kb on - strand, within Xcc-8004.4913.1 at 4675.661 kb on - strand, within Xcc-8004.4913.1 at 4675.661 kb on - strand, within Xcc-8004.4913.1 at 4675.675 kb on + strand, within Xcc-8004.4913.1 at 4675.676 kb on - strand, within Xcc-8004.4913.1 at 4675.847 kb on + strand at 4675.848 kb on - strand at 4675.917 kb on + strand at 4675.917 kb on + strand at 4675.918 kb on - strand at 4675.918 kb on - strand at 4675.918 kb on - strand at 4675.923 kb on + strand at 4675.923 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.971 kb on + strand at 4675.972 kb on - strand at 4675.972 kb on - strand at 4675.972 kb on - strand at 4675.980 kb on + strand at 4675.980 kb on + strand at 4675.980 kb on + strand at 4675.980 kb on + strand at 4675.981 kb on - strand at 4675.981 kb on - strand at 4675.981 kb on - strand at 4676.600 kb on - strand, within Xcc-8004.4916.1 at 4676.790 kb on + strand, within Xcc-8004.4916.1 at 4676.790 kb on + strand, within Xcc-8004.4916.1 at 4676.790 kb on + strand, within Xcc-8004.4916.1 at 4676.790 kb on + strand, within Xcc-8004.4916.1 at 4676.791 kb on - strand, within Xcc-8004.4916.1 at 4677.089 kb on - strand, within Xcc-8004.4916.1 at 4677.089 kb on - strand, within Xcc-8004.4916.1 at 4677.105 kb on + strand, within Xcc-8004.4916.1 at 4677.106 kb on - strand, within Xcc-8004.4916.1 at 4677.182 kb on + strand, within Xcc-8004.4916.1 at 4677.183 kb on - strand, within Xcc-8004.4916.1 at 4677.183 kb on - strand, within Xcc-8004.4916.1 at 4677.183 kb on - strand, within Xcc-8004.4916.1 at 4677.183 kb on - strand, within Xcc-8004.4916.1 at 4677.183 kb on - strand, within Xcc-8004.4916.1 at 4677.200 kb on + strand, within Xcc-8004.4916.1 at 4677.551 kb on + strand, within Xcc-8004.4916.1 at 4677.551 kb on + strand, within Xcc-8004.4916.1 at 4677.551 kb on + strand, within Xcc-8004.4916.1 at 4677.552 kb on - strand, within Xcc-8004.4916.1 at 4677.552 kb on - strand, within Xcc-8004.4916.1 at 4677.552 kb on - strand, within Xcc-8004.4916.1 at 4677.766 kb on + strand at 4677.792 kb on + strand at 4677.792 kb on + strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.831 kb on - strand at 4677.831 kb on - strand at 4677.831 kb on - strand at 4677.831 kb on - strand at 4677.832 kb on + strand at 4677.832 kb on + strand at 4677.832 kb on + strand at 4677.832 kb on + strand at 4677.833 kb on - strand at 4677.833 kb on - strand at 4677.939 kb on + strand at 4678.027 kb on - strand at 4678.027 kb on - strand at 4678.109 kb on - strand at 4678.109 kb on - strand at 4678.157 kb on + strand at 4678.157 kb on + strand at 4678.158 kb on - strand at 4678.158 kb on - strand at 4678.158 kb on - strand at 4678.244 kb on - strand, within Xcc-8004.4917.1 at 4678.244 kb on - strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.321 kb on + strand, within Xcc-8004.4917.1 at 4678.492 kb on + strand, within Xcc-8004.4917.1 at 4678.493 kb on - strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.520 kb on - strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.556 kb on - strand, within Xcc-8004.4917.1 at 4678.556 kb on - strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.668 kb on + strand at 4678.668 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.714 kb on - strand at 4678.714 kb on - strand at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,675,300 + +2.4 4,675,301 - +0.7 4,675,301 - +0.4 4,675,301 - +1.0 4,675,303 + -0.8 4,675,303 + -2.1 4,675,303 + -0.0 4,675,303 + +1.0 4,675,304 - -0.8 4,675,304 - +0.8 4,675,304 - +1.1 4,675,304 - -0.6 4,675,304 - +2.1 4,675,433 + +1.5 4,675,433 + -2.4 4,675,433 + +1.2 4,675,434 - -1.0 4,675,434 - -0.3 4,675,434 - +1.1 4,675,434 - -0.6 4,675,474 + -1.6 4,675,474 + -2.4 4,675,475 - +0.2 4,675,475 - +0.8 4,675,475 - -0.7 4,675,475 - -1.1 4,675,475 - -1.0 4,675,531 + Xcc-8004.4913.1 0.17 +1.5 4,675,532 - Xcc-8004.4913.1 0.17 -1.0 4,675,660 + Xcc-8004.4913.1 0.55 -0.5 4,675,660 + Xcc-8004.4913.1 0.55 +0.1 4,675,660 + Xcc-8004.4913.1 0.55 -2.5 4,675,660 + Xcc-8004.4913.1 0.55 +1.9 4,675,660 + Xcc-8004.4913.1 0.55 -0.3 4,675,661 - Xcc-8004.4913.1 0.55 +0.6 4,675,661 - Xcc-8004.4913.1 0.55 +1.7 4,675,661 - Xcc-8004.4913.1 0.55 -0.1 4,675,661 - Xcc-8004.4913.1 0.55 -0.9 4,675,675 + Xcc-8004.4913.1 0.60 -0.6 4,675,676 - Xcc-8004.4913.1 0.60 +1.6 4,675,847 + -1.2 4,675,848 - -0.1 4,675,917 + -1.1 4,675,917 + -0.9 4,675,918 - -0.5 4,675,918 - -2.3 4,675,918 - -0.9 4,675,923 + -2.5 4,675,923 + -1.1 4,675,955 + +1.0 4,675,955 + -1.5 4,675,955 + +2.5 4,675,955 + -1.0 4,675,955 + -0.6 4,675,955 + -2.1 4,675,955 + -0.5 4,675,955 + +1.4 4,675,955 + -2.5 4,675,955 + -2.7 4,675,955 + +0.2 4,675,955 + -1.6 4,675,955 + +2.2 4,675,955 + -0.2 4,675,956 - +0.0 4,675,956 - +1.4 4,675,956 - +0.4 4,675,956 - -0.6 4,675,956 - +1.7 4,675,956 - -1.1 4,675,956 - -0.3 4,675,971 + +0.1 4,675,972 - +1.8 4,675,972 - +2.0 4,675,972 - -1.4 4,675,980 + -0.3 4,675,980 + +0.2 4,675,980 + +0.9 4,675,980 + -1.2 4,675,981 - +1.2 4,675,981 - +2.7 4,675,981 - -3.2 4,676,600 - Xcc-8004.4916.1 0.20 +0.7 4,676,790 + Xcc-8004.4916.1 0.33 +0.2 4,676,790 + Xcc-8004.4916.1 0.33 +3.1 4,676,790 + Xcc-8004.4916.1 0.33 -0.4 4,676,790 + Xcc-8004.4916.1 0.33 +1.2 4,676,791 - Xcc-8004.4916.1 0.33 +0.2 4,677,089 - Xcc-8004.4916.1 0.53 +1.0 4,677,089 - Xcc-8004.4916.1 0.53 +3.0 4,677,105 + Xcc-8004.4916.1 0.54 -2.5 4,677,106 - Xcc-8004.4916.1 0.54 +0.1 4,677,182 + Xcc-8004.4916.1 0.59 +2.3 4,677,183 - Xcc-8004.4916.1 0.59 +0.2 4,677,183 - Xcc-8004.4916.1 0.59 -2.4 4,677,183 - Xcc-8004.4916.1 0.59 -2.0 4,677,183 - Xcc-8004.4916.1 0.59 -1.1 4,677,183 - Xcc-8004.4916.1 0.59 -0.0 4,677,200 + Xcc-8004.4916.1 0.60 -0.3 4,677,551 + Xcc-8004.4916.1 0.83 -2.3 4,677,551 + Xcc-8004.4916.1 0.83 -1.6 4,677,551 + Xcc-8004.4916.1 0.83 -0.2 4,677,552 - Xcc-8004.4916.1 0.83 +0.5 4,677,552 - Xcc-8004.4916.1 0.83 +4.1 4,677,552 - Xcc-8004.4916.1 0.83 +0.4 4,677,766 + +1.4 4,677,792 + +0.5 4,677,792 + +0.2 4,677,793 - -0.6 4,677,793 - -1.5 4,677,793 - -2.2 4,677,793 - -1.6 4,677,793 - +0.9 4,677,793 - +1.0 4,677,830 + +0.7 4,677,830 + -1.2 4,677,830 + +0.7 4,677,830 + +3.6 4,677,830 + -2.6 4,677,830 + +1.3 4,677,830 + +0.7 4,677,831 - -0.8 4,677,831 - +1.9 4,677,831 - +0.2 4,677,831 - +0.4 4,677,832 + -1.1 4,677,832 + -2.6 4,677,832 + +0.9 4,677,832 + +0.1 4,677,833 - -1.5 4,677,833 - -0.1 4,677,939 + -2.0 4,678,027 - -3.6 4,678,027 - -0.8 4,678,109 - +0.0 4,678,109 - -2.9 4,678,157 + +0.4 4,678,157 + -0.6 4,678,158 - +0.2 4,678,158 - -0.6 4,678,158 - +0.2 4,678,244 - Xcc-8004.4917.1 0.18 -2.4 4,678,244 - Xcc-8004.4917.1 0.18 -0.9 4,678,310 + Xcc-8004.4917.1 0.30 -1.3 4,678,310 + Xcc-8004.4917.1 0.30 -1.3 4,678,310 + Xcc-8004.4917.1 0.30 +1.5 4,678,310 + Xcc-8004.4917.1 0.30 -2.9 4,678,310 + Xcc-8004.4917.1 0.30 +0.3 4,678,310 + Xcc-8004.4917.1 0.30 +0.3 4,678,311 - Xcc-8004.4917.1 0.30 +0.1 4,678,311 - Xcc-8004.4917.1 0.30 +2.7 4,678,311 - Xcc-8004.4917.1 0.30 -1.1 4,678,311 - Xcc-8004.4917.1 0.30 +0.1 4,678,321 + Xcc-8004.4917.1 0.32 +0.6 4,678,492 + Xcc-8004.4917.1 0.62 +1.7 4,678,493 - Xcc-8004.4917.1 0.63 +0.0 4,678,519 + Xcc-8004.4917.1 0.67 -1.5 4,678,519 + Xcc-8004.4917.1 0.67 -1.1 4,678,519 + Xcc-8004.4917.1 0.67 -0.8 4,678,520 - Xcc-8004.4917.1 0.67 +0.2 4,678,555 + Xcc-8004.4917.1 0.74 -0.2 4,678,555 + Xcc-8004.4917.1 0.74 -1.3 4,678,555 + Xcc-8004.4917.1 0.74 +3.1 4,678,556 - Xcc-8004.4917.1 0.74 -0.3 4,678,556 - Xcc-8004.4917.1 0.74 -1.7 4,678,609 + Xcc-8004.4917.1 0.83 -0.9 4,678,609 + Xcc-8004.4917.1 0.83 -1.9 4,678,609 + Xcc-8004.4917.1 0.83 +2.3 4,678,609 + Xcc-8004.4917.1 0.83 -0.2 4,678,609 + Xcc-8004.4917.1 0.83 +2.1 4,678,609 + Xcc-8004.4917.1 0.83 +2.7 4,678,609 + Xcc-8004.4917.1 0.83 +1.4 4,678,609 + Xcc-8004.4917.1 0.83 -1.3 4,678,609 + Xcc-8004.4917.1 0.83 +0.5 4,678,610 - Xcc-8004.4917.1 0.84 -2.3 4,678,610 - Xcc-8004.4917.1 0.84 -0.6 4,678,610 - Xcc-8004.4917.1 0.84 +0.5 4,678,668 + +1.3 4,678,668 + +0.9 4,678,713 + -1.0 4,678,713 + +1.4 4,678,713 + -2.4 4,678,713 + -0.8 4,678,714 - +1.3 4,678,714 - +0.4 4,678,797 + Xcc-8004.4918.1 0.48 -1.3 4,678,797 + Xcc-8004.4918.1 0.48 -4.6 4,678,797 + Xcc-8004.4918.1 0.48 -0.5 4,678,797 + Xcc-8004.4918.1 0.48 -1.5 4,678,797 + Xcc-8004.4918.1 0.48 -0.3 4,678,797 + Xcc-8004.4918.1 0.48 -1.6 4,678,797 + Xcc-8004.4918.1 0.48 -1.7 4,678,797 + Xcc-8004.4918.1 0.48 -2.3 4,678,797 + Xcc-8004.4918.1 0.48 -2.0 4,678,797 + Xcc-8004.4918.1 0.48 -1.5 4,678,798 - Xcc-8004.4918.1 0.49 +2.8 4,678,798 - Xcc-8004.4918.1 0.49 +2.0 4,678,798 - Xcc-8004.4918.1 0.49 +1.0 4,678,798 - Xcc-8004.4918.1 0.49 -2.6 4,678,798 - Xcc-8004.4918.1 0.49 -3.6 4,678,798 - Xcc-8004.4918.1 0.49 +0.6 4,678,798 - Xcc-8004.4918.1 0.49 -1.2 4,678,798 - Xcc-8004.4918.1 0.49 +4.6 4,678,798 - Xcc-8004.4918.1 0.49 +4.0 4,678,798 - Xcc-8004.4918.1 0.49 -2.3 4,678,798 - Xcc-8004.4918.1 0.49 -0.9
Or see this region's nucleotide sequence