Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4850.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4849.1 and Xcc-8004.4850.1 are separated by 113 nucleotidesXcc-8004.4850.1 and Xcc-8004.4851.1 are separated by 79 nucleotides Xcc-8004.4849.1: Xcc-8004.4849.1 - Mobile element protein, at 4,614,209 to 4,615,633 Xcc-8004.4849.1 Xcc-8004.4850.1: Xcc-8004.4850.1 - hypothetical protein, at 4,615,747 to 4,616,130 Xcc-8004.4850.1 Xcc-8004.4851.1: Xcc-8004.4851.1 - FIG01211087: hypothetical protein, at 4,616,210 to 4,617,367 Xcc-8004.4851.1 Position (kb) 4615 4616 4617Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4615.655 kb on + strandat 4615.655 kb on + strandat 4615.818 kb on - strand, within Xcc-8004.4850.1at 4615.957 kb on + strand, within Xcc-8004.4850.1at 4615.957 kb on + strand, within Xcc-8004.4850.1at 4615.957 kb on + strand, within Xcc-8004.4850.1at 4615.958 kb on - strand, within Xcc-8004.4850.1at 4615.958 kb on - strand, within Xcc-8004.4850.1at 4615.988 kb on - strand, within Xcc-8004.4850.1at 4615.988 kb on - strand, within Xcc-8004.4850.1at 4616.008 kb on + strand, within Xcc-8004.4850.1at 4616.009 kb on - strand, within Xcc-8004.4850.1at 4616.018 kb on - strand, within Xcc-8004.4850.1at 4616.018 kb on - strand, within Xcc-8004.4850.1at 4616.061 kb on + strand, within Xcc-8004.4850.1at 4616.061 kb on + strand, within Xcc-8004.4850.1at 4616.061 kb on + strand, within Xcc-8004.4850.1at 4616.061 kb on + strand, within Xcc-8004.4850.1at 4616.061 kb on + strand, within Xcc-8004.4850.1at 4616.062 kb on - strand, within Xcc-8004.4850.1at 4616.062 kb on - strand, within Xcc-8004.4850.1at 4616.062 kb on - strand, within Xcc-8004.4850.1at 4616.099 kb on - strandat 4616.131 kb on - strandat 4616.172 kb on + strandat 4616.172 kb on + strandat 4616.194 kb on + strandat 4616.208 kb on + strandat 4616.209 kb on - strandat 4616.261 kb on + strandat 4616.261 kb on + strandat 4616.354 kb on + strand, within Xcc-8004.4851.1at 4616.354 kb on + strand, within Xcc-8004.4851.1at 4616.355 kb on - strand, within Xcc-8004.4851.1at 4616.365 kb on + strand, within Xcc-8004.4851.1at 4616.365 kb on + strand, within Xcc-8004.4851.1at 4616.366 kb on - strand, within Xcc-8004.4851.1at 4616.366 kb on - strand, within Xcc-8004.4851.1at 4616.366 kb on - strand, within Xcc-8004.4851.1at 4616.366 kb on - strand, within Xcc-8004.4851.1at 4616.366 kb on - strand, within Xcc-8004.4851.1at 4616.405 kb on + strand, within Xcc-8004.4851.1at 4616.405 kb on + strand, within Xcc-8004.4851.1at 4616.432 kb on + strand, within Xcc-8004.4851.1at 4616.592 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.695 kb on + strand, within Xcc-8004.4851.1at 4616.696 kb on - strand, within Xcc-8004.4851.1at 4616.696 kb on - strand, within Xcc-8004.4851.1at 4616.696 kb on - strand, within Xcc-8004.4851.1at 4616.696 kb on - strand, within Xcc-8004.4851.1at 4616.696 kb on - strand, within Xcc-8004.4851.1at 4616.757 kb on + strand, within Xcc-8004.4851.1at 4616.757 kb on + strand, within Xcc-8004.4851.1at 4616.758 kb on - strand, within Xcc-8004.4851.1at 4616.758 kb on - strand, within Xcc-8004.4851.1at 4616.769 kb on + strand, within Xcc-8004.4851.1at 4616.781 kb on + strand, within Xcc-8004.4851.1at 4616.798 kb on - strand, within Xcc-8004.4851.1at 4616.905 kb on - strand, within Xcc-8004.4851.1at 4616.905 kb on - strand, within Xcc-8004.4851.1at 4616.957 kb on - strand, within Xcc-8004.4851.1at 4616.961 kb on - strand, within Xcc-8004.4851.1at 4616.978 kb on + strand, within Xcc-8004.4851.1at 4616.990 kb on - strand, within Xcc-8004.4851.1at 4617.031 kb on - strand, within Xcc-8004.4851.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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4,615,655 + +0.4
4,615,655 + +1.9
4,615,818 - Xcc-8004.4850.1 0.18 +1.5
4,615,957 + Xcc-8004.4850.1 0.55 -1.0
4,615,957 + Xcc-8004.4850.1 0.55 -0.4
4,615,957 + Xcc-8004.4850.1 0.55 -1.1
4,615,958 - Xcc-8004.4850.1 0.55 +0.1
4,615,958 - Xcc-8004.4850.1 0.55 +0.6
4,615,988 - Xcc-8004.4850.1 0.63 +0.3
4,615,988 - Xcc-8004.4850.1 0.63 -2.7
4,616,008 + Xcc-8004.4850.1 0.68 +1.1
4,616,009 - Xcc-8004.4850.1 0.68 -0.2
4,616,018 - Xcc-8004.4850.1 0.71 -1.1
4,616,018 - Xcc-8004.4850.1 0.71 +2.1
4,616,061 + Xcc-8004.4850.1 0.82 -0.0
4,616,061 + Xcc-8004.4850.1 0.82 -2.0
4,616,061 + Xcc-8004.4850.1 0.82 -2.4
4,616,061 + Xcc-8004.4850.1 0.82 +0.2
4,616,061 + Xcc-8004.4850.1 0.82 -2.0
4,616,062 - Xcc-8004.4850.1 0.82 +1.9
4,616,062 - Xcc-8004.4850.1 0.82 -0.3
4,616,062 - Xcc-8004.4850.1 0.82 -2.3
4,616,099 - -0.1
4,616,131 - -1.3
4,616,172 + -3.1
4,616,172 + -1.6
4,616,194 + +2.3
4,616,208 + -1.2
4,616,209 - +0.1
4,616,261 + +0.3
4,616,261 + -1.2
4,616,354 + Xcc-8004.4851.1 0.12 +2.8
4,616,354 + Xcc-8004.4851.1 0.12 -1.7
4,616,355 - Xcc-8004.4851.1 0.13 -0.6
4,616,365 + Xcc-8004.4851.1 0.13 -2.1
4,616,365 + Xcc-8004.4851.1 0.13 -0.1
4,616,366 - Xcc-8004.4851.1 0.13 +3.0
4,616,366 - Xcc-8004.4851.1 0.13 +0.7
4,616,366 - Xcc-8004.4851.1 0.13 -3.4
4,616,366 - Xcc-8004.4851.1 0.13 +2.5
4,616,366 - Xcc-8004.4851.1 0.13 +0.8
4,616,405 + Xcc-8004.4851.1 0.17 +1.1
4,616,405 + Xcc-8004.4851.1 0.17 -1.3
4,616,432 + Xcc-8004.4851.1 0.19 +0.1
4,616,592 + Xcc-8004.4851.1 0.33 -2.9
4,616,695 + Xcc-8004.4851.1 0.42 -0.4
4,616,695 + Xcc-8004.4851.1 0.42 +0.1
4,616,695 + Xcc-8004.4851.1 0.42 -0.6
4,616,695 + Xcc-8004.4851.1 0.42 +4.3
4,616,695 + Xcc-8004.4851.1 0.42 -0.4
4,616,695 + Xcc-8004.4851.1 0.42 +0.7
4,616,696 - Xcc-8004.4851.1 0.42 -1.3
4,616,696 - Xcc-8004.4851.1 0.42 -0.5
4,616,696 - Xcc-8004.4851.1 0.42 +1.7
4,616,696 - Xcc-8004.4851.1 0.42 +0.4
4,616,696 - Xcc-8004.4851.1 0.42 +2.5
4,616,757 + Xcc-8004.4851.1 0.47 +0.9
4,616,757 + Xcc-8004.4851.1 0.47 -0.8
4,616,758 - Xcc-8004.4851.1 0.47 -1.1
4,616,758 - Xcc-8004.4851.1 0.47 -0.5
4,616,769 + Xcc-8004.4851.1 0.48 +2.0
4,616,781 + Xcc-8004.4851.1 0.49 -1.5
4,616,798 - Xcc-8004.4851.1 0.51 +0.4
4,616,905 - Xcc-8004.4851.1 0.60 -1.9
4,616,905 - Xcc-8004.4851.1 0.60 -0.3
4,616,957 - Xcc-8004.4851.1 0.65 -1.0
4,616,961 - Xcc-8004.4851.1 0.65 -1.3
4,616,978 + Xcc-8004.4851.1 0.66 +0.1
4,616,990 - Xcc-8004.4851.1 0.67 +1.7
4,617,031 - Xcc-8004.4851.1 0.71 +0.1

Or see this region's nucleotide sequence