Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4846.1 and Xcc-8004.4847.1 are separated by 16 nucleotides Xcc-8004.4847.1 and Xcc-8004.4848.1 are separated by 323 nucleotides Xcc-8004.4848.1 and Xcc-8004.4849.1 are separated by 189 nucleotides
Xcc-8004.4846.1: Xcc-8004.4846.1 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 4,609,064 to 4,610,047
Xcc-8004.4846.1
Xcc-8004.4847.1: Xcc-8004.4847.1 - FIG01209735: hypothetical protein, at 4,610,064 to 4,610,495
Xcc-8004.4847.1
Xcc-8004.4848.1: Xcc-8004.4848.1 - Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88), at 4,610,819 to 4,614,019
Xcc-8004.4848.1
Xcc-8004.4849.1: Xcc-8004.4849.1 - Mobile element protein, at 4,614,209 to 4,615,633
Xcc-8004.4849.1
Position (kb) 4610
4611
4612
4613
4614
4615 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4609.821 kb on + strand, within Xcc-8004.4846.1 at 4609.822 kb on - strand, within Xcc-8004.4846.1 at 4609.890 kb on + strand, within Xcc-8004.4846.1 at 4609.890 kb on + strand, within Xcc-8004.4846.1 at 4609.890 kb on + strand, within Xcc-8004.4846.1 at 4609.890 kb on + strand, within Xcc-8004.4846.1 at 4609.890 kb on + strand, within Xcc-8004.4846.1 at 4609.891 kb on - strand, within Xcc-8004.4846.1 at 4609.891 kb on - strand, within Xcc-8004.4846.1 at 4609.891 kb on - strand, within Xcc-8004.4846.1 at 4609.891 kb on - strand, within Xcc-8004.4846.1 at 4610.016 kb on + strand at 4610.016 kb on + strand at 4610.016 kb on + strand at 4610.016 kb on + strand at 4610.017 kb on - strand at 4610.017 kb on - strand at 4610.017 kb on - strand at 4610.017 kb on - strand at 4610.017 kb on - strand at 4610.052 kb on + strand at 4610.052 kb on + strand at 4610.053 kb on - strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.108 kb on + strand, within Xcc-8004.4847.1 at 4610.108 kb on + strand, within Xcc-8004.4847.1 at 4610.108 kb on + strand, within Xcc-8004.4847.1 at 4610.109 kb on - strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.275 kb on - strand, within Xcc-8004.4847.1 at 4610.275 kb on - strand, within Xcc-8004.4847.1 at 4610.275 kb on - strand, within Xcc-8004.4847.1 at 4610.275 kb on - strand, within Xcc-8004.4847.1 at 4610.301 kb on + strand, within Xcc-8004.4847.1 at 4610.301 kb on + strand, within Xcc-8004.4847.1 at 4610.301 kb on + strand, within Xcc-8004.4847.1 at 4610.302 kb on - strand, within Xcc-8004.4847.1 at 4610.302 kb on - strand, within Xcc-8004.4847.1 at 4610.302 kb on - strand, within Xcc-8004.4847.1 at 4610.529 kb on + strand at 4610.529 kb on + strand at 4610.530 kb on - strand at 4610.577 kb on + strand at 4610.577 kb on + strand at 4610.577 kb on + strand at 4610.577 kb on + strand at 4610.578 kb on - strand at 4610.578 kb on - strand at 4610.578 kb on - strand at 4610.578 kb on - strand at 4610.683 kb on + strand at 4610.683 kb on + strand at 4610.684 kb on - strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.787 kb on - strand at 4610.787 kb on - strand at 4610.814 kb on + strand at 4610.814 kb on + strand at 4610.814 kb on + strand at 4610.814 kb on + strand at 4610.814 kb on + strand at 4610.814 kb on + strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4611.086 kb on + strand at 4611.086 kb on + strand at 4611.087 kb on - strand at 4611.087 kb on - strand at 4611.298 kb on + strand, within Xcc-8004.4848.1 at 4611.467 kb on + strand, within Xcc-8004.4848.1 at 4611.467 kb on + strand, within Xcc-8004.4848.1 at 4611.468 kb on - strand, within Xcc-8004.4848.1 at 4611.468 kb on - strand, within Xcc-8004.4848.1 at 4611.468 kb on - strand, within Xcc-8004.4848.1 at 4611.468 kb on - strand, within Xcc-8004.4848.1 at 4611.527 kb on + strand, within Xcc-8004.4848.1 at 4611.528 kb on - strand, within Xcc-8004.4848.1 at 4611.574 kb on + strand, within Xcc-8004.4848.1 at 4611.574 kb on + strand, within Xcc-8004.4848.1 at 4611.575 kb on - strand, within Xcc-8004.4848.1 at 4611.575 kb on - strand, within Xcc-8004.4848.1 at 4611.635 kb on + strand, within Xcc-8004.4848.1 at 4611.645 kb on - strand, within Xcc-8004.4848.1 at 4611.734 kb on + strand, within Xcc-8004.4848.1 at 4611.735 kb on - strand, within Xcc-8004.4848.1 at 4611.851 kb on + strand, within Xcc-8004.4848.1 at 4611.869 kb on + strand, within Xcc-8004.4848.1 at 4611.869 kb on + strand, within Xcc-8004.4848.1 at 4611.944 kb on + strand, within Xcc-8004.4848.1 at 4611.944 kb on + strand, within Xcc-8004.4848.1 at 4611.945 kb on - strand, within Xcc-8004.4848.1 at 4612.031 kb on + strand, within Xcc-8004.4848.1 at 4612.032 kb on - strand, within Xcc-8004.4848.1 at 4612.032 kb on - strand, within Xcc-8004.4848.1 at 4612.145 kb on + strand, within Xcc-8004.4848.1 at 4612.145 kb on + strand, within Xcc-8004.4848.1 at 4612.146 kb on - strand, within Xcc-8004.4848.1 at 4612.146 kb on - strand, within Xcc-8004.4848.1 at 4612.146 kb on - strand, within Xcc-8004.4848.1 at 4612.184 kb on + strand, within Xcc-8004.4848.1 at 4612.184 kb on + strand, within Xcc-8004.4848.1 at 4612.184 kb on + strand, within Xcc-8004.4848.1 at 4612.184 kb on + strand, within Xcc-8004.4848.1 at 4612.184 kb on + strand, within Xcc-8004.4848.1 at 4612.185 kb on - strand, within Xcc-8004.4848.1 at 4612.185 kb on - strand, within Xcc-8004.4848.1 at 4612.232 kb on + strand, within Xcc-8004.4848.1 at 4612.233 kb on - strand, within Xcc-8004.4848.1 at 4612.233 kb on - strand, within Xcc-8004.4848.1 at 4612.233 kb on - strand, within Xcc-8004.4848.1 at 4612.233 kb on - strand, within Xcc-8004.4848.1 at 4612.268 kb on + strand, within Xcc-8004.4848.1 at 4612.269 kb on - strand, within Xcc-8004.4848.1 at 4612.269 kb on - strand, within Xcc-8004.4848.1 at 4612.830 kb on + strand, within Xcc-8004.4848.1 at 4612.830 kb on + strand, within Xcc-8004.4848.1 at 4612.831 kb on - strand, within Xcc-8004.4848.1 at 4612.857 kb on - strand, within Xcc-8004.4848.1 at 4612.857 kb on - strand, within Xcc-8004.4848.1 at 4612.859 kb on + strand, within Xcc-8004.4848.1 at 4612.859 kb on + strand, within Xcc-8004.4848.1 at 4612.859 kb on + strand, within Xcc-8004.4848.1 at 4612.859 kb on + strand, within Xcc-8004.4848.1 at 4612.859 kb on + strand, within Xcc-8004.4848.1 at 4612.860 kb on - strand, within Xcc-8004.4848.1 at 4612.860 kb on - strand, within Xcc-8004.4848.1 at 4612.860 kb on - strand, within Xcc-8004.4848.1 at 4613.032 kb on + strand, within Xcc-8004.4848.1 at 4613.032 kb on + strand, within Xcc-8004.4848.1 at 4613.335 kb on - strand, within Xcc-8004.4848.1 at 4613.406 kb on + strand, within Xcc-8004.4848.1 at 4613.407 kb on - strand, within Xcc-8004.4848.1 at 4613.407 kb on - strand, within Xcc-8004.4848.1 at 4613.753 kb on + strand at 4613.754 kb on - strand at 4613.834 kb on + strand at 4613.834 kb on + strand at 4613.834 kb on + strand at 4613.834 kb on + strand at 4613.834 kb on + strand at 4613.835 kb on - strand at 4613.930 kb on + strand at 4613.931 kb on - strand at 4613.931 kb on - strand at 4613.931 kb on - strand at 4614.042 kb on + strand at 4614.043 kb on - strand at 4614.046 kb on + strand at 4614.046 kb on + strand at 4614.047 kb on - strand at 4614.047 kb on - strand at 4614.047 kb on - strand at 4614.047 kb on - strand at 4614.047 kb on - strand at 4614.047 kb on - strand at 4614.047 kb on - strand at 4614.109 kb on + strand at 4614.109 kb on + strand at 4614.109 kb on + strand at 4614.109 kb on + strand at 4614.109 kb on + strand at 4614.109 kb on + strand at 4614.115 kb on + strand at 4614.115 kb on + strand at 4614.115 kb on + strand at 4614.116 kb on - strand at 4614.116 kb on - strand at 4614.116 kb on - strand at 4614.116 kb on - strand at 4614.116 kb on - strand at 4614.116 kb on - strand at 4614.123 kb on + strand at 4614.124 kb on - strand at 4614.124 kb on - strand at 4614.124 kb on - strand at 4614.144 kb on - strand at 4614.144 kb on - strand at 4614.148 kb on - strand at 4614.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,609,821 + Xcc-8004.4846.1 0.77 +0.9 4,609,822 - Xcc-8004.4846.1 0.77 +2.0 4,609,890 + Xcc-8004.4846.1 0.84 +0.9 4,609,890 + Xcc-8004.4846.1 0.84 -2.1 4,609,890 + Xcc-8004.4846.1 0.84 -0.4 4,609,890 + Xcc-8004.4846.1 0.84 -1.1 4,609,890 + Xcc-8004.4846.1 0.84 -0.0 4,609,891 - Xcc-8004.4846.1 0.84 -0.0 4,609,891 - Xcc-8004.4846.1 0.84 -1.0 4,609,891 - Xcc-8004.4846.1 0.84 -0.1 4,609,891 - Xcc-8004.4846.1 0.84 +0.7 4,610,016 + -1.3 4,610,016 + -0.5 4,610,016 + -1.9 4,610,016 + +1.8 4,610,017 - -0.8 4,610,017 - -2.4 4,610,017 - -3.2 4,610,017 - -1.4 4,610,017 - +0.1 4,610,052 + -2.5 4,610,052 + -2.2 4,610,053 - +0.6 4,610,060 + -3.2 4,610,060 + -3.0 4,610,060 + -1.2 4,610,060 + -1.6 4,610,060 + +0.4 4,610,060 + -1.8 4,610,060 + -1.9 4,610,060 + -0.9 4,610,060 + +0.4 4,610,061 - +1.5 4,610,061 - +1.7 4,610,061 - -0.3 4,610,061 - -0.1 4,610,061 - +1.9 4,610,061 - -0.5 4,610,061 - -0.8 4,610,061 - -1.9 4,610,061 - +1.7 4,610,108 + Xcc-8004.4847.1 0.10 -1.1 4,610,108 + Xcc-8004.4847.1 0.10 +0.2 4,610,108 + Xcc-8004.4847.1 0.10 -0.9 4,610,109 - Xcc-8004.4847.1 0.10 +1.4 4,610,274 + Xcc-8004.4847.1 0.49 +0.7 4,610,274 + Xcc-8004.4847.1 0.49 +0.8 4,610,274 + Xcc-8004.4847.1 0.49 -2.2 4,610,274 + Xcc-8004.4847.1 0.49 -2.9 4,610,274 + Xcc-8004.4847.1 0.49 +0.4 4,610,274 + Xcc-8004.4847.1 0.49 -0.6 4,610,274 + Xcc-8004.4847.1 0.49 -1.0 4,610,274 + Xcc-8004.4847.1 0.49 -0.6 4,610,274 + Xcc-8004.4847.1 0.49 -0.5 4,610,275 - Xcc-8004.4847.1 0.49 -0.3 4,610,275 - Xcc-8004.4847.1 0.49 -1.4 4,610,275 - Xcc-8004.4847.1 0.49 +1.7 4,610,275 - Xcc-8004.4847.1 0.49 -2.1 4,610,301 + Xcc-8004.4847.1 0.55 +1.1 4,610,301 + Xcc-8004.4847.1 0.55 -0.7 4,610,301 + Xcc-8004.4847.1 0.55 -0.9 4,610,302 - Xcc-8004.4847.1 0.55 +1.7 4,610,302 - Xcc-8004.4847.1 0.55 -1.3 4,610,302 - Xcc-8004.4847.1 0.55 +0.4 4,610,529 + -0.7 4,610,529 + -0.5 4,610,530 - -1.5 4,610,577 + -0.6 4,610,577 + +0.1 4,610,577 + -1.3 4,610,577 + -1.2 4,610,578 - +0.5 4,610,578 - -1.1 4,610,578 - -0.3 4,610,578 - +0.8 4,610,683 + +0.7 4,610,683 + +1.7 4,610,684 - -0.3 4,610,786 + -0.2 4,610,786 + -1.0 4,610,786 + -1.5 4,610,786 + -1.5 4,610,786 + -0.9 4,610,786 + -1.5 4,610,786 + -1.6 4,610,786 + +0.5 4,610,787 - -1.3 4,610,787 - +3.3 4,610,814 + -1.0 4,610,814 + +1.2 4,610,814 + -0.9 4,610,814 + -0.1 4,610,814 + +3.9 4,610,814 + -2.2 4,610,815 - -1.5 4,610,815 - -1.2 4,610,815 - +0.5 4,610,815 - -0.9 4,610,815 - -1.0 4,610,815 - -1.3 4,610,815 - +1.1 4,610,818 + +0.5 4,610,818 + +0.0 4,610,818 + -0.6 4,610,818 + -1.1 4,610,818 + +2.0 4,610,818 + -1.6 4,610,818 + -0.8 4,610,818 + -1.8 4,610,818 + -0.6 4,610,818 + +0.5 4,610,819 - +1.7 4,610,819 - +0.5 4,610,819 - -1.3 4,610,819 - -1.4 4,610,819 - +1.7 4,610,819 - -1.1 4,610,819 - -0.7 4,611,086 + -0.5 4,611,086 + -1.8 4,611,087 - +0.5 4,611,087 - +0.9 4,611,298 + Xcc-8004.4848.1 0.15 +1.2 4,611,467 + Xcc-8004.4848.1 0.20 -1.4 4,611,467 + Xcc-8004.4848.1 0.20 +1.3 4,611,468 - Xcc-8004.4848.1 0.20 -0.1 4,611,468 - Xcc-8004.4848.1 0.20 -2.6 4,611,468 - Xcc-8004.4848.1 0.20 -2.7 4,611,468 - Xcc-8004.4848.1 0.20 -1.4 4,611,527 + Xcc-8004.4848.1 0.22 +3.3 4,611,528 - Xcc-8004.4848.1 0.22 -0.6 4,611,574 + Xcc-8004.4848.1 0.24 -1.0 4,611,574 + Xcc-8004.4848.1 0.24 -0.6 4,611,575 - Xcc-8004.4848.1 0.24 -0.1 4,611,575 - Xcc-8004.4848.1 0.24 -0.7 4,611,635 + Xcc-8004.4848.1 0.25 -0.1 4,611,645 - Xcc-8004.4848.1 0.26 -1.2 4,611,734 + Xcc-8004.4848.1 0.29 +0.7 4,611,735 - Xcc-8004.4848.1 0.29 +1.4 4,611,851 + Xcc-8004.4848.1 0.32 +2.7 4,611,869 + Xcc-8004.4848.1 0.33 -0.8 4,611,869 + Xcc-8004.4848.1 0.33 +0.7 4,611,944 + Xcc-8004.4848.1 0.35 -0.5 4,611,944 + Xcc-8004.4848.1 0.35 -2.1 4,611,945 - Xcc-8004.4848.1 0.35 -1.3 4,612,031 + Xcc-8004.4848.1 0.38 -0.3 4,612,032 - Xcc-8004.4848.1 0.38 -2.1 4,612,032 - Xcc-8004.4848.1 0.38 +2.0 4,612,145 + Xcc-8004.4848.1 0.41 +0.2 4,612,145 + Xcc-8004.4848.1 0.41 -2.8 4,612,146 - Xcc-8004.4848.1 0.41 -1.6 4,612,146 - Xcc-8004.4848.1 0.41 +3.8 4,612,146 - Xcc-8004.4848.1 0.41 -2.2 4,612,184 + Xcc-8004.4848.1 0.43 +2.7 4,612,184 + Xcc-8004.4848.1 0.43 -0.7 4,612,184 + Xcc-8004.4848.1 0.43 -2.9 4,612,184 + Xcc-8004.4848.1 0.43 -0.9 4,612,184 + Xcc-8004.4848.1 0.43 +0.4 4,612,185 - Xcc-8004.4848.1 0.43 -2.2 4,612,185 - Xcc-8004.4848.1 0.43 -1.8 4,612,232 + Xcc-8004.4848.1 0.44 -0.0 4,612,233 - Xcc-8004.4848.1 0.44 +1.7 4,612,233 - Xcc-8004.4848.1 0.44 +1.6 4,612,233 - Xcc-8004.4848.1 0.44 +0.3 4,612,233 - Xcc-8004.4848.1 0.44 +0.8 4,612,268 + Xcc-8004.4848.1 0.45 +0.8 4,612,269 - Xcc-8004.4848.1 0.45 -0.2 4,612,269 - Xcc-8004.4848.1 0.45 -2.5 4,612,830 + Xcc-8004.4848.1 0.63 +0.8 4,612,830 + Xcc-8004.4848.1 0.63 +0.2 4,612,831 - Xcc-8004.4848.1 0.63 +2.7 4,612,857 - Xcc-8004.4848.1 0.64 +1.0 4,612,857 - Xcc-8004.4848.1 0.64 -3.0 4,612,859 + Xcc-8004.4848.1 0.64 -1.0 4,612,859 + Xcc-8004.4848.1 0.64 -1.4 4,612,859 + Xcc-8004.4848.1 0.64 -0.5 4,612,859 + Xcc-8004.4848.1 0.64 +0.3 4,612,859 + Xcc-8004.4848.1 0.64 -0.3 4,612,860 - Xcc-8004.4848.1 0.64 -0.1 4,612,860 - Xcc-8004.4848.1 0.64 +0.9 4,612,860 - Xcc-8004.4848.1 0.64 -1.6 4,613,032 + Xcc-8004.4848.1 0.69 -1.5 4,613,032 + Xcc-8004.4848.1 0.69 +3.8 4,613,335 - Xcc-8004.4848.1 0.79 -1.0 4,613,406 + Xcc-8004.4848.1 0.81 +1.7 4,613,407 - Xcc-8004.4848.1 0.81 -0.3 4,613,407 - Xcc-8004.4848.1 0.81 -1.3 4,613,753 + -2.5 4,613,754 - -1.3 4,613,834 + -0.2 4,613,834 + +0.2 4,613,834 + +0.6 4,613,834 + +0.3 4,613,834 + +1.7 4,613,835 - -2.7 4,613,930 + +0.3 4,613,931 - -0.2 4,613,931 - -2.8 4,613,931 - +0.8 4,614,042 + +1.0 4,614,043 - +0.7 4,614,046 + -4.1 4,614,046 + -1.5 4,614,047 - -1.1 4,614,047 - -0.7 4,614,047 - -2.9 4,614,047 - -1.4 4,614,047 - -1.5 4,614,047 - -1.4 4,614,047 - +0.1 4,614,109 + -1.5 4,614,109 + +0.3 4,614,109 + +1.0 4,614,109 + -0.5 4,614,109 + -0.0 4,614,109 + -1.3 4,614,115 + +0.7 4,614,115 + -2.4 4,614,115 + -0.0 4,614,116 - +0.6 4,614,116 - +0.3 4,614,116 - -0.4 4,614,116 - +0.5 4,614,116 - -0.4 4,614,116 - -0.5 4,614,123 + -0.1 4,614,124 - +2.5 4,614,124 - +0.7 4,614,124 - +0.3 4,614,144 - +0.0 4,614,144 - +1.7 4,614,148 - -0.1 4,614,148 - -1.9
Or see this region's nucleotide sequence