Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4832.1 and Xcc-8004.4833.1 overlap by 4 nucleotides Xcc-8004.4833.1 and Xcc-8004.4834.1 are separated by 88 nucleotides Xcc-8004.4834.1 and Xcc-8004.4835.1 are separated by 229 nucleotides
Xcc-8004.4832.1: Xcc-8004.4832.1 - DNA primase (EC 2.7.7.-), at 4,596,831 to 4,598,579
Xcc-8004.4832.1
Xcc-8004.4833.1: Xcc-8004.4833.1 - FIG01111678: hypothetical protein, at 4,598,576 to 4,599,076
Xcc-8004.4833.1
Xcc-8004.4834.1: Xcc-8004.4834.1 - Sodium - Bile acid symporter, at 4,599,165 to 4,600,157
Xcc-8004.4834.1
Xcc-8004.4835.1: Xcc-8004.4835.1 - Disulphide-isomerase, at 4,600,387 to 4,601,964
Xcc-8004.4835.1
Position (kb) 4599
4600
4601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4598.586 kb on + strand at 4598.813 kb on + strand, within Xcc-8004.4833.1 at 4598.813 kb on + strand, within Xcc-8004.4833.1 at 4598.814 kb on - strand, within Xcc-8004.4833.1 at 4599.119 kb on + strand at 4599.119 kb on + strand at 4599.119 kb on + strand at 4599.119 kb on + strand at 4599.119 kb on + strand at 4599.120 kb on - strand at 4599.120 kb on - strand at 4599.468 kb on + strand, within Xcc-8004.4834.1 at 4599.468 kb on + strand, within Xcc-8004.4834.1 at 4599.469 kb on - strand, within Xcc-8004.4834.1 at 4599.469 kb on - strand, within Xcc-8004.4834.1 at 4599.469 kb on - strand, within Xcc-8004.4834.1 at 4599.469 kb on - strand, within Xcc-8004.4834.1 at 4599.469 kb on - strand, within Xcc-8004.4834.1 at 4599.562 kb on + strand, within Xcc-8004.4834.1 at 4599.633 kb on - strand, within Xcc-8004.4834.1 at 4599.768 kb on + strand, within Xcc-8004.4834.1 at 4599.768 kb on + strand, within Xcc-8004.4834.1 at 4599.768 kb on + strand, within Xcc-8004.4834.1 at 4599.801 kb on + strand, within Xcc-8004.4834.1 at 4599.801 kb on + strand, within Xcc-8004.4834.1 at 4599.801 kb on + strand, within Xcc-8004.4834.1 at 4599.802 kb on - strand, within Xcc-8004.4834.1 at 4599.802 kb on - strand, within Xcc-8004.4834.1 at 4599.871 kb on + strand, within Xcc-8004.4834.1 at 4600.007 kb on - strand, within Xcc-8004.4834.1 at 4600.071 kb on + strand at 4600.305 kb on + strand at 4600.305 kb on + strand at 4600.306 kb on - strand at 4600.306 kb on - strand at 4600.600 kb on + strand, within Xcc-8004.4835.1 at 4600.600 kb on + strand, within Xcc-8004.4835.1 at 4600.600 kb on + strand, within Xcc-8004.4835.1 at 4600.601 kb on - strand, within Xcc-8004.4835.1 at 4600.951 kb on + strand, within Xcc-8004.4835.1 at 4600.951 kb on + strand, within Xcc-8004.4835.1 at 4600.951 kb on + strand, within Xcc-8004.4835.1 at 4600.951 kb on + strand, within Xcc-8004.4835.1 at 4600.951 kb on + strand, within Xcc-8004.4835.1 at 4600.951 kb on + strand, within Xcc-8004.4835.1 at 4600.951 kb on + strand, within Xcc-8004.4835.1 at 4600.951 kb on + strand, within Xcc-8004.4835.1 at 4600.952 kb on - strand, within Xcc-8004.4835.1 at 4600.952 kb on - strand, within Xcc-8004.4835.1 at 4600.952 kb on - strand, within Xcc-8004.4835.1 at 4600.952 kb on - strand, within Xcc-8004.4835.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,598,586 + -1.3 4,598,813 + Xcc-8004.4833.1 0.47 +0.6 4,598,813 + Xcc-8004.4833.1 0.47 +0.5 4,598,814 - Xcc-8004.4833.1 0.48 +0.4 4,599,119 + +0.1 4,599,119 + +1.8 4,599,119 + -1.3 4,599,119 + -1.5 4,599,119 + +0.8 4,599,120 - +0.2 4,599,120 - +0.3 4,599,468 + Xcc-8004.4834.1 0.31 -2.2 4,599,468 + Xcc-8004.4834.1 0.31 -2.3 4,599,469 - Xcc-8004.4834.1 0.31 +0.5 4,599,469 - Xcc-8004.4834.1 0.31 -2.0 4,599,469 - Xcc-8004.4834.1 0.31 -2.0 4,599,469 - Xcc-8004.4834.1 0.31 -2.3 4,599,469 - Xcc-8004.4834.1 0.31 +0.1 4,599,562 + Xcc-8004.4834.1 0.40 -0.4 4,599,633 - Xcc-8004.4834.1 0.47 -1.2 4,599,768 + Xcc-8004.4834.1 0.61 -2.0 4,599,768 + Xcc-8004.4834.1 0.61 -1.5 4,599,768 + Xcc-8004.4834.1 0.61 -2.3 4,599,801 + Xcc-8004.4834.1 0.64 -1.8 4,599,801 + Xcc-8004.4834.1 0.64 -0.9 4,599,801 + Xcc-8004.4834.1 0.64 +0.1 4,599,802 - Xcc-8004.4834.1 0.64 -1.9 4,599,802 - Xcc-8004.4834.1 0.64 -0.2 4,599,871 + Xcc-8004.4834.1 0.71 -2.1 4,600,007 - Xcc-8004.4834.1 0.85 -0.0 4,600,071 + -0.2 4,600,305 + +0.4 4,600,305 + +1.4 4,600,306 - -2.4 4,600,306 - +1.3 4,600,600 + Xcc-8004.4835.1 0.13 -2.7 4,600,600 + Xcc-8004.4835.1 0.13 -0.1 4,600,600 + Xcc-8004.4835.1 0.13 -0.5 4,600,601 - Xcc-8004.4835.1 0.14 -0.6 4,600,951 + Xcc-8004.4835.1 0.36 +0.0 4,600,951 + Xcc-8004.4835.1 0.36 +1.2 4,600,951 + Xcc-8004.4835.1 0.36 +1.4 4,600,951 + Xcc-8004.4835.1 0.36 +0.9 4,600,951 + Xcc-8004.4835.1 0.36 -3.2 4,600,951 + Xcc-8004.4835.1 0.36 -0.7 4,600,951 + Xcc-8004.4835.1 0.36 +1.2 4,600,951 + Xcc-8004.4835.1 0.36 +0.7 4,600,952 - Xcc-8004.4835.1 0.36 +1.0 4,600,952 - Xcc-8004.4835.1 0.36 +0.3 4,600,952 - Xcc-8004.4835.1 0.36 +0.7 4,600,952 - Xcc-8004.4835.1 0.36 -1.8
Or see this region's nucleotide sequence