Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4804.1 and Xcc-8004.4805.1 are separated by 240 nucleotides Xcc-8004.4805.1 and Xcc-8004.4806.1 are separated by 223 nucleotides Xcc-8004.4806.1 and Xcc-8004.4807.1 are separated by 237 nucleotides Xcc-8004.4807.1 and Xcc-8004.4808.1 are separated by 10 nucleotides
Xcc-8004.4804.1: Xcc-8004.4804.1 - FIG01211687: hypothetical protein, at 4,574,575 to 4,575,009
Xcc-8004.4804.1
Xcc-8004.4805.1: Xcc-8004.4805.1 - FIG01211119: hypothetical protein, at 4,575,250 to 4,575,597
Xcc-8004.4805.1
Xcc-8004.4806.1: Xcc-8004.4806.1 - FIG01211609: hypothetical protein, at 4,575,821 to 4,576,198
Xcc-8004.4806.1
Xcc-8004.4807.1: Xcc-8004.4807.1 - FIG01210497: hypothetical protein, at 4,576,436 to 4,576,633
Xcc-8004.4807.1
Xcc-8004.4808.1: Xcc-8004.4808.1 - D-alanyl-D-alanine dipeptidase (EC 3.4.13.22), at 4,576,644 to 4,577,348
Xcc-8004.4808.1
Position (kb) 4575
4576
4577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4574.989 kb on + strand at 4574.989 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.009 kb on + strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.010 kb on - strand at 4575.044 kb on + strand at 4575.058 kb on + strand at 4575.059 kb on - strand at 4575.106 kb on + strand at 4575.107 kb on - strand at 4575.107 kb on - strand at 4575.107 kb on - strand at 4575.181 kb on + strand at 4575.200 kb on + strand at 4575.200 kb on + strand at 4575.200 kb on + strand at 4575.200 kb on + strand at 4575.201 kb on - strand at 4575.201 kb on - strand at 4575.201 kb on - strand at 4575.201 kb on - strand at 4575.235 kb on + strand at 4575.235 kb on + strand at 4575.236 kb on - strand at 4575.236 kb on - strand at 4575.236 kb on - strand at 4575.236 kb on - strand at 4575.236 kb on - strand at 4575.251 kb on + strand at 4575.252 kb on - strand at 4575.252 kb on - strand at 4575.252 kb on - strand at 4575.252 kb on - strand at 4575.252 kb on - strand at 4575.252 kb on - strand at 4575.305 kb on + strand, within Xcc-8004.4805.1 at 4575.305 kb on + strand, within Xcc-8004.4805.1 at 4575.306 kb on - strand, within Xcc-8004.4805.1 at 4575.306 kb on - strand, within Xcc-8004.4805.1 at 4575.306 kb on - strand, within Xcc-8004.4805.1 at 4575.421 kb on + strand, within Xcc-8004.4805.1 at 4575.421 kb on + strand, within Xcc-8004.4805.1 at 4575.422 kb on - strand, within Xcc-8004.4805.1 at 4575.422 kb on - strand, within Xcc-8004.4805.1 at 4575.422 kb on - strand, within Xcc-8004.4805.1 at 4575.478 kb on - strand, within Xcc-8004.4805.1 at 4575.651 kb on + strand at 4575.651 kb on + strand at 4575.651 kb on + strand at 4575.651 kb on + strand at 4575.652 kb on - strand at 4575.652 kb on - strand at 4575.652 kb on - strand at 4575.652 kb on - strand at 4575.652 kb on - strand at 4575.652 kb on - strand at 4575.652 kb on - strand at 4575.652 kb on - strand at 4575.652 kb on - strand at 4575.652 kb on - strand at 4575.705 kb on + strand at 4575.706 kb on - strand at 4575.706 kb on - strand at 4575.741 kb on + strand at 4575.741 kb on + strand at 4575.742 kb on - strand at 4575.742 kb on - strand at 4575.823 kb on - strand at 4575.823 kb on - strand at 4575.969 kb on + strand, within Xcc-8004.4806.1 at 4575.970 kb on - strand, within Xcc-8004.4806.1 at 4575.970 kb on - strand, within Xcc-8004.4806.1 at 4576.128 kb on - strand, within Xcc-8004.4806.1 at 4576.234 kb on - strand at 4576.539 kb on + strand, within Xcc-8004.4807.1 at 4576.539 kb on + strand, within Xcc-8004.4807.1 at 4576.539 kb on + strand, within Xcc-8004.4807.1 at 4576.539 kb on + strand, within Xcc-8004.4807.1 at 4576.539 kb on + strand, within Xcc-8004.4807.1 at 4576.539 kb on + strand, within Xcc-8004.4807.1 at 4576.539 kb on + strand, within Xcc-8004.4807.1 at 4576.540 kb on - strand, within Xcc-8004.4807.1 at 4576.540 kb on - strand, within Xcc-8004.4807.1 at 4576.540 kb on - strand, within Xcc-8004.4807.1 at 4576.540 kb on - strand, within Xcc-8004.4807.1 at 4576.540 kb on - strand, within Xcc-8004.4807.1 at 4576.594 kb on - strand, within Xcc-8004.4807.1 at 4576.606 kb on + strand, within Xcc-8004.4807.1 at 4576.720 kb on + strand, within Xcc-8004.4808.1 at 4576.804 kb on + strand, within Xcc-8004.4808.1 at 4576.805 kb on + strand, within Xcc-8004.4808.1 at 4576.805 kb on + strand, within Xcc-8004.4808.1 at 4576.806 kb on - strand, within Xcc-8004.4808.1 at 4576.806 kb on - strand, within Xcc-8004.4808.1 at 4576.933 kb on + strand, within Xcc-8004.4808.1 at 4576.933 kb on + strand, within Xcc-8004.4808.1 at 4576.933 kb on + strand, within Xcc-8004.4808.1 at 4576.933 kb on + strand, within Xcc-8004.4808.1 at 4576.934 kb on - strand, within Xcc-8004.4808.1 at 4576.970 kb on - strand, within Xcc-8004.4808.1 at 4576.972 kb on + strand, within Xcc-8004.4808.1 at 4576.973 kb on - strand, within Xcc-8004.4808.1 at 4577.048 kb on - strand, within Xcc-8004.4808.1 at 4577.134 kb on + strand, within Xcc-8004.4808.1 at 4577.135 kb on - strand, within Xcc-8004.4808.1 at 4577.152 kb on + strand, within Xcc-8004.4808.1 at 4577.153 kb on - strand, within Xcc-8004.4808.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,574,989 + +0.1 4,574,989 + -1.5 4,575,009 + -2.9 4,575,009 + +0.9 4,575,009 + -2.2 4,575,009 + -1.8 4,575,009 + -2.6 4,575,009 + -2.2 4,575,009 + +2.6 4,575,009 + +0.1 4,575,009 + -0.6 4,575,009 + -1.1 4,575,009 + -1.5 4,575,009 + +3.9 4,575,009 + -0.1 4,575,009 + +1.7 4,575,010 - +2.2 4,575,010 - +0.8 4,575,010 - -0.3 4,575,010 - -1.5 4,575,010 - +1.1 4,575,010 - +0.9 4,575,010 - -2.4 4,575,010 - +0.6 4,575,010 - -0.5 4,575,010 - +0.0 4,575,010 - -0.9 4,575,010 - -0.9 4,575,010 - -0.9 4,575,010 - +0.7 4,575,044 + -2.2 4,575,058 + -2.0 4,575,059 - +0.1 4,575,106 + +1.0 4,575,107 - -1.8 4,575,107 - -2.2 4,575,107 - +0.1 4,575,181 + -1.1 4,575,200 + -0.3 4,575,200 + +1.2 4,575,200 + +0.7 4,575,200 + +0.1 4,575,201 - -0.2 4,575,201 - -0.8 4,575,201 - -2.1 4,575,201 - +1.3 4,575,235 + -1.7 4,575,235 + +0.9 4,575,236 - -1.0 4,575,236 - -0.2 4,575,236 - -0.9 4,575,236 - -1.5 4,575,236 - +2.2 4,575,251 + +0.5 4,575,252 - -3.6 4,575,252 - -2.7 4,575,252 - -0.3 4,575,252 - +0.3 4,575,252 - +0.1 4,575,252 - -0.2 4,575,305 + Xcc-8004.4805.1 0.16 -1.2 4,575,305 + Xcc-8004.4805.1 0.16 -3.5 4,575,306 - Xcc-8004.4805.1 0.16 -3.6 4,575,306 - Xcc-8004.4805.1 0.16 -1.1 4,575,306 - Xcc-8004.4805.1 0.16 -2.3 4,575,421 + Xcc-8004.4805.1 0.49 +0.5 4,575,421 + Xcc-8004.4805.1 0.49 +0.5 4,575,422 - Xcc-8004.4805.1 0.49 +1.0 4,575,422 - Xcc-8004.4805.1 0.49 -1.5 4,575,422 - Xcc-8004.4805.1 0.49 +0.7 4,575,478 - Xcc-8004.4805.1 0.66 +0.2 4,575,651 + -0.7 4,575,651 + +2.5 4,575,651 + +0.4 4,575,651 + -0.0 4,575,652 - +0.0 4,575,652 - -2.1 4,575,652 - +1.8 4,575,652 - +0.6 4,575,652 - +0.8 4,575,652 - -1.2 4,575,652 - +0.7 4,575,652 - -1.8 4,575,652 - -0.5 4,575,652 - -0.5 4,575,705 + +1.6 4,575,706 - +1.3 4,575,706 - +0.7 4,575,741 + -2.1 4,575,741 + +0.8 4,575,742 - -1.6 4,575,742 - +0.0 4,575,823 - +1.5 4,575,823 - -1.3 4,575,969 + Xcc-8004.4806.1 0.39 -3.1 4,575,970 - Xcc-8004.4806.1 0.39 -2.5 4,575,970 - Xcc-8004.4806.1 0.39 -1.1 4,576,128 - Xcc-8004.4806.1 0.81 -0.2 4,576,234 - -0.4 4,576,539 + Xcc-8004.4807.1 0.52 -0.3 4,576,539 + Xcc-8004.4807.1 0.52 -0.7 4,576,539 + Xcc-8004.4807.1 0.52 +2.2 4,576,539 + Xcc-8004.4807.1 0.52 -0.6 4,576,539 + Xcc-8004.4807.1 0.52 -3.0 4,576,539 + Xcc-8004.4807.1 0.52 -0.0 4,576,539 + Xcc-8004.4807.1 0.52 +0.5 4,576,540 - Xcc-8004.4807.1 0.53 -0.3 4,576,540 - Xcc-8004.4807.1 0.53 +1.7 4,576,540 - Xcc-8004.4807.1 0.53 +0.9 4,576,540 - Xcc-8004.4807.1 0.53 -0.2 4,576,540 - Xcc-8004.4807.1 0.53 +2.8 4,576,594 - Xcc-8004.4807.1 0.80 -0.6 4,576,606 + Xcc-8004.4807.1 0.86 -1.1 4,576,720 + Xcc-8004.4808.1 0.11 -0.3 4,576,804 + Xcc-8004.4808.1 0.23 +1.0 4,576,805 + Xcc-8004.4808.1 0.23 -1.8 4,576,805 + Xcc-8004.4808.1 0.23 -0.2 4,576,806 - Xcc-8004.4808.1 0.23 +0.3 4,576,806 - Xcc-8004.4808.1 0.23 -2.2 4,576,933 + Xcc-8004.4808.1 0.41 -0.9 4,576,933 + Xcc-8004.4808.1 0.41 +0.7 4,576,933 + Xcc-8004.4808.1 0.41 -1.1 4,576,933 + Xcc-8004.4808.1 0.41 +2.9 4,576,934 - Xcc-8004.4808.1 0.41 +1.4 4,576,970 - Xcc-8004.4808.1 0.46 -0.0 4,576,972 + Xcc-8004.4808.1 0.47 -2.4 4,576,973 - Xcc-8004.4808.1 0.47 -0.9 4,577,048 - Xcc-8004.4808.1 0.57 +1.3 4,577,134 + Xcc-8004.4808.1 0.70 -2.8 4,577,135 - Xcc-8004.4808.1 0.70 -0.9 4,577,152 + Xcc-8004.4808.1 0.72 -0.2 4,577,153 - Xcc-8004.4808.1 0.72 +0.1
Or see this region's nucleotide sequence