Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4738.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4737.1 and Xcc-8004.4738.1 are separated by 3 nucleotidesXcc-8004.4738.1 and Xcc-8004.4739.1 overlap by 16 nucleotides Xcc-8004.4737.1: Xcc-8004.4737.1 - Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis, at 4,507,218 to 4,508,273 Xcc-8004.4737.1 Xcc-8004.4738.1: Xcc-8004.4738.1 - Lipopolysaccharide core biosynthesis glycosyl transferase, at 4,508,277 to 4,509,101 Xcc-8004.4738.1 Xcc-8004.4739.1: Xcc-8004.4739.1 - Lipid A core - O-antigen ligase and related enzymes, at 4,509,086 to 4,510,375 Xcc-8004.4739.1 Position (kb) 4508 4509 4510Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4507.702 kb on + strand, within Xcc-8004.4737.1at 4507.703 kb on - strand, within Xcc-8004.4737.1at 4507.703 kb on - strand, within Xcc-8004.4737.1at 4507.703 kb on - strand, within Xcc-8004.4737.1at 4507.703 kb on - strand, within Xcc-8004.4737.1at 4507.741 kb on + strand, within Xcc-8004.4737.1at 4507.741 kb on + strand, within Xcc-8004.4737.1at 4507.741 kb on + strand, within Xcc-8004.4737.1at 4507.742 kb on - strand, within Xcc-8004.4737.1at 4507.742 kb on - strand, within Xcc-8004.4737.1at 4507.742 kb on - strand, within Xcc-8004.4737.1at 4507.742 kb on - strand, within Xcc-8004.4737.1at 4507.742 kb on - strand, within Xcc-8004.4737.1at 4507.958 kb on - strand, within Xcc-8004.4737.1at 4507.958 kb on - strand, within Xcc-8004.4737.1at 4507.958 kb on - strand, within Xcc-8004.4737.1at 4508.202 kb on + strandat 4508.202 kb on + strandat 4508.202 kb on + strandat 4508.203 kb on - strandat 4508.228 kb on + strandat 4508.229 kb on - strandat 4508.229 kb on - strandat 4508.263 kb on + strandat 4508.263 kb on + strandat 4508.264 kb on - strandat 4508.264 kb on - strandat 4508.264 kb on - strandat 4508.486 kb on + strand, within Xcc-8004.4738.1at 4508.646 kb on + strand, within Xcc-8004.4738.1at 4508.647 kb on - strand, within Xcc-8004.4738.1at 4508.808 kb on + strand, within Xcc-8004.4738.1at 4508.847 kb on + strand, within Xcc-8004.4738.1at 4508.943 kb on + strand, within Xcc-8004.4738.1at 4508.943 kb on + strand, within Xcc-8004.4738.1at 4508.944 kb on - strand, within Xcc-8004.4738.1at 4508.988 kb on + strand, within Xcc-8004.4738.1at 4508.988 kb on + strand, within Xcc-8004.4738.1at 4508.988 kb on + strand, within Xcc-8004.4738.1at 4508.989 kb on - strand, within Xcc-8004.4738.1at 4508.989 kb on - strand, within Xcc-8004.4738.1at 4508.989 kb on - strand, within Xcc-8004.4738.1at 4508.995 kb on - strand, within Xcc-8004.4738.1at 4508.995 kb on - strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.180 kb on + strandat 4509.237 kb on + strand, within Xcc-8004.4739.1at 4509.238 kb on - strand, within Xcc-8004.4739.1at 4509.336 kb on + strand, within Xcc-8004.4739.1at 4509.337 kb on - strand, within Xcc-8004.4739.1at 4509.337 kb on - strand, within Xcc-8004.4739.1at 4509.367 kb on + strand, within Xcc-8004.4739.1at 4509.368 kb on - strand, within Xcc-8004.4739.1at 4510.023 kb on + strand, within Xcc-8004.4739.1at 4510.023 kb on + strand, within Xcc-8004.4739.1at 4510.023 kb on + strand, within Xcc-8004.4739.1at 4510.023 kb on + strand, within Xcc-8004.4739.1at 4510.023 kb on + strand, within Xcc-8004.4739.1at 4510.024 kb on - strand, within Xcc-8004.4739.1at 4510.024 kb on - strand, within Xcc-8004.4739.1at 4510.024 kb on - strand, within Xcc-8004.4739.1at 4510.024 kb on - strand, within Xcc-8004.4739.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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4,507,702 + Xcc-8004.4737.1 0.46 -1.1
4,507,703 - Xcc-8004.4737.1 0.46 -0.4
4,507,703 - Xcc-8004.4737.1 0.46 -0.7
4,507,703 - Xcc-8004.4737.1 0.46 -1.5
4,507,703 - Xcc-8004.4737.1 0.46 -1.1
4,507,741 + Xcc-8004.4737.1 0.50 +1.3
4,507,741 + Xcc-8004.4737.1 0.50 +0.3
4,507,741 + Xcc-8004.4737.1 0.50 -1.5
4,507,742 - Xcc-8004.4737.1 0.50 -0.9
4,507,742 - Xcc-8004.4737.1 0.50 -0.9
4,507,742 - Xcc-8004.4737.1 0.50 +0.1
4,507,742 - Xcc-8004.4737.1 0.50 -1.9
4,507,742 - Xcc-8004.4737.1 0.50 -3.7
4,507,958 - Xcc-8004.4737.1 0.70 -0.4
4,507,958 - Xcc-8004.4737.1 0.70 -0.9
4,507,958 - Xcc-8004.4737.1 0.70 -0.9
4,508,202 + +1.7
4,508,202 + -2.3
4,508,202 + +0.8
4,508,203 - -2.7
4,508,228 + +0.1
4,508,229 - -0.3
4,508,229 - -0.9
4,508,263 + -1.9
4,508,263 + -3.0
4,508,264 - +0.4
4,508,264 - -0.6
4,508,264 - -0.3
4,508,486 + Xcc-8004.4738.1 0.25 -2.0
4,508,646 + Xcc-8004.4738.1 0.45 -2.4
4,508,647 - Xcc-8004.4738.1 0.45 -1.9
4,508,808 + Xcc-8004.4738.1 0.64 -2.3
4,508,847 + Xcc-8004.4738.1 0.69 -1.9
4,508,943 + Xcc-8004.4738.1 0.81 -1.7
4,508,943 + Xcc-8004.4738.1 0.81 -2.1
4,508,944 - Xcc-8004.4738.1 0.81 -1.9
4,508,988 + Xcc-8004.4738.1 0.86 -0.3
4,508,988 + Xcc-8004.4738.1 0.86 -0.7
4,508,988 + Xcc-8004.4738.1 0.86 -1.9
4,508,989 - Xcc-8004.4738.1 0.86 -1.9
4,508,989 - Xcc-8004.4738.1 0.86 -3.5
4,508,989 - Xcc-8004.4738.1 0.86 -2.1
4,508,995 - Xcc-8004.4738.1 0.87 +0.6
4,508,995 - Xcc-8004.4738.1 0.87 -0.7
4,508,998 + Xcc-8004.4738.1 0.87 -1.3
4,508,998 + Xcc-8004.4738.1 0.87 -1.1
4,508,998 + Xcc-8004.4738.1 0.87 -2.8
4,508,998 + Xcc-8004.4738.1 0.87 -1.1
4,508,998 + Xcc-8004.4738.1 0.87 -2.3
4,508,998 + Xcc-8004.4738.1 0.87 +0.1
4,508,998 + Xcc-8004.4738.1 0.87 +0.1
4,508,998 + Xcc-8004.4738.1 0.87 -0.9
4,508,998 + Xcc-8004.4738.1 0.87 +0.7
4,508,998 + Xcc-8004.4738.1 0.87 -0.3
4,508,999 - Xcc-8004.4738.1 0.88 -2.1
4,508,999 - Xcc-8004.4738.1 0.88 +0.7
4,508,999 - Xcc-8004.4738.1 0.88 -3.2
4,508,999 - Xcc-8004.4738.1 0.88 -2.3
4,508,999 - Xcc-8004.4738.1 0.88 -0.7
4,508,999 - Xcc-8004.4738.1 0.88 -0.5
4,508,999 - Xcc-8004.4738.1 0.88 -0.7
4,508,999 - Xcc-8004.4738.1 0.88 -2.0
4,508,999 - Xcc-8004.4738.1 0.88 +1.7
4,508,999 - Xcc-8004.4738.1 0.88 -3.8
4,508,999 - Xcc-8004.4738.1 0.88 -2.5
4,508,999 - Xcc-8004.4738.1 0.88 +0.3
4,508,999 - Xcc-8004.4738.1 0.88 -2.3
4,508,999 - Xcc-8004.4738.1 0.88 -1.9
4,508,999 - Xcc-8004.4738.1 0.88 -2.6
4,508,999 - Xcc-8004.4738.1 0.88 -1.7
4,509,009 + Xcc-8004.4738.1 0.89 -0.3
4,509,009 + Xcc-8004.4738.1 0.89 -2.9
4,509,009 + Xcc-8004.4738.1 0.89 -3.4
4,509,009 + Xcc-8004.4738.1 0.89 -2.9
4,509,009 + Xcc-8004.4738.1 0.89 +1.7
4,509,009 + Xcc-8004.4738.1 0.89 -0.4
4,509,009 + Xcc-8004.4738.1 0.89 -1.1
4,509,009 + Xcc-8004.4738.1 0.89 +0.1
4,509,009 + Xcc-8004.4738.1 0.89 -1.8
4,509,009 + Xcc-8004.4738.1 0.89 -2.3
4,509,009 + Xcc-8004.4738.1 0.89 -2.5
4,509,009 + Xcc-8004.4738.1 0.89 -0.9
4,509,010 - Xcc-8004.4738.1 0.89 -2.3
4,509,010 - Xcc-8004.4738.1 0.89 -0.7
4,509,010 - Xcc-8004.4738.1 0.89 -2.9
4,509,010 - Xcc-8004.4738.1 0.89 -3.3
4,509,010 - Xcc-8004.4738.1 0.89 -2.2
4,509,010 - Xcc-8004.4738.1 0.89 -2.4
4,509,010 - Xcc-8004.4738.1 0.89 -1.1
4,509,010 - Xcc-8004.4738.1 0.89 -0.9
4,509,010 - Xcc-8004.4738.1 0.89 -3.1
4,509,010 - Xcc-8004.4738.1 0.89 -2.2
4,509,010 - Xcc-8004.4738.1 0.89 -0.3
4,509,010 - Xcc-8004.4738.1 0.89 -2.7
4,509,010 - Xcc-8004.4738.1 0.89 -0.3
4,509,180 + -1.3
4,509,237 + Xcc-8004.4739.1 0.12 -1.1
4,509,238 - Xcc-8004.4739.1 0.12 -0.9
4,509,336 + Xcc-8004.4739.1 0.19 -1.1
4,509,337 - Xcc-8004.4739.1 0.19 -1.7
4,509,337 - Xcc-8004.4739.1 0.19 -0.3
4,509,367 + Xcc-8004.4739.1 0.22 -2.7
4,509,368 - Xcc-8004.4739.1 0.22 -0.9
4,510,023 + Xcc-8004.4739.1 0.73 -1.8
4,510,023 + Xcc-8004.4739.1 0.73 -2.7
4,510,023 + Xcc-8004.4739.1 0.73 +1.3
4,510,023 + Xcc-8004.4739.1 0.73 -0.3
4,510,023 + Xcc-8004.4739.1 0.73 -0.7
4,510,024 - Xcc-8004.4739.1 0.73 -2.1
4,510,024 - Xcc-8004.4739.1 0.73 +1.7
4,510,024 - Xcc-8004.4739.1 0.73 +1.1
4,510,024 - Xcc-8004.4739.1 0.73 -2.2

Or see this region's nucleotide sequence