Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4633.1 and Xcc-8004.4634.1 are separated by 150 nucleotides Xcc-8004.4634.1 and Xcc-8004.4635.1 are separated by 139 nucleotides Xcc-8004.4635.1 and Xcc-8004.4637.1 are separated by 284 nucleotides
Xcc-8004.4633.1: Xcc-8004.4633.1 - FIG01210488: hypothetical protein, at 4,414,171 to 4,414,725
Xcc-8004.4633.1
Xcc-8004.4634.1: Xcc-8004.4634.1 - FIG01211407: hypothetical protein, at 4,414,876 to 4,415,157
Xcc-8004.4634.1
Xcc-8004.4635.1: Xcc-8004.4635.1 - hypothetical protein, at 4,415,297 to 4,415,434
Xcc-8004.4635.1
Xcc-8004.4637.1: Xcc-8004.4637.1 - ABC-type multidrug transport system, permease component, at 4,415,719 to 4,416,480
Xcc-8004.4637.1
Position (kb) 4415
4416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4414.304 kb on + strand, within Xcc-8004.4633.1 at 4414.475 kb on + strand, within Xcc-8004.4633.1 at 4414.475 kb on + strand, within Xcc-8004.4633.1 at 4414.475 kb on + strand, within Xcc-8004.4633.1 at 4414.476 kb on - strand, within Xcc-8004.4633.1 at 4414.790 kb on - strand at 4415.014 kb on + strand, within Xcc-8004.4634.1 at 4415.014 kb on + strand, within Xcc-8004.4634.1 at 4415.014 kb on + strand, within Xcc-8004.4634.1 at 4415.113 kb on + strand, within Xcc-8004.4634.1 at 4415.113 kb on + strand, within Xcc-8004.4634.1 at 4415.113 kb on + strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.114 kb on - strand, within Xcc-8004.4634.1 at 4415.116 kb on + strand, within Xcc-8004.4634.1 at 4415.116 kb on + strand, within Xcc-8004.4634.1 at 4415.116 kb on + strand, within Xcc-8004.4634.1 at 4415.117 kb on - strand, within Xcc-8004.4634.1 at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.215 kb on + strand at 4415.216 kb on - strand at 4415.216 kb on - strand at 4415.216 kb on - strand at 4415.219 kb on + strand at 4415.219 kb on + strand at 4415.220 kb on - strand at 4415.344 kb on + strand, within Xcc-8004.4635.1 at 4415.345 kb on - strand, within Xcc-8004.4635.1 at 4415.345 kb on - strand, within Xcc-8004.4635.1 at 4415.834 kb on + strand, within Xcc-8004.4637.1 at 4415.834 kb on + strand, within Xcc-8004.4637.1 at 4415.835 kb on - strand, within Xcc-8004.4637.1 at 4415.864 kb on + strand, within Xcc-8004.4637.1 at 4415.924 kb on + strand, within Xcc-8004.4637.1 at 4415.924 kb on + strand, within Xcc-8004.4637.1 at 4415.924 kb on + strand, within Xcc-8004.4637.1 at 4415.924 kb on + strand, within Xcc-8004.4637.1 at 4415.925 kb on - strand, within Xcc-8004.4637.1 at 4415.925 kb on - strand, within Xcc-8004.4637.1 at 4416.165 kb on - strand, within Xcc-8004.4637.1 at 4416.165 kb on - strand, within Xcc-8004.4637.1 at 4416.212 kb on + strand, within Xcc-8004.4637.1 at 4416.213 kb on - strand, within Xcc-8004.4637.1 at 4416.213 kb on - strand, within Xcc-8004.4637.1 at 4416.213 kb on - strand, within Xcc-8004.4637.1 at 4416.239 kb on + strand, within Xcc-8004.4637.1 at 4416.239 kb on + strand, within Xcc-8004.4637.1 at 4416.239 kb on + strand, within Xcc-8004.4637.1 at 4416.240 kb on - strand, within Xcc-8004.4637.1 at 4416.240 kb on - strand, within Xcc-8004.4637.1 at 4416.240 kb on - strand, within Xcc-8004.4637.1 at 4416.240 kb on - strand, within Xcc-8004.4637.1 at 4416.240 kb on - strand, within Xcc-8004.4637.1 at 4416.367 kb on + strand, within Xcc-8004.4637.1 at 4416.368 kb on - strand, within Xcc-8004.4637.1 at 4416.378 kb on - strand, within Xcc-8004.4637.1 at 4416.378 kb on - strand, within Xcc-8004.4637.1 at 4416.378 kb on - strand, within Xcc-8004.4637.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,414,304 + Xcc-8004.4633.1 0.24 +1.4 4,414,475 + Xcc-8004.4633.1 0.55 +0.3 4,414,475 + Xcc-8004.4633.1 0.55 +0.1 4,414,475 + Xcc-8004.4633.1 0.55 -3.2 4,414,476 - Xcc-8004.4633.1 0.55 -1.3 4,414,790 - -1.5 4,415,014 + Xcc-8004.4634.1 0.49 +0.4 4,415,014 + Xcc-8004.4634.1 0.49 -2.3 4,415,014 + Xcc-8004.4634.1 0.49 +2.0 4,415,113 + Xcc-8004.4634.1 0.84 -0.3 4,415,113 + Xcc-8004.4634.1 0.84 -2.7 4,415,113 + Xcc-8004.4634.1 0.84 +0.1 4,415,114 - Xcc-8004.4634.1 0.84 -1.3 4,415,114 - Xcc-8004.4634.1 0.84 -0.6 4,415,114 - Xcc-8004.4634.1 0.84 -1.1 4,415,114 - Xcc-8004.4634.1 0.84 +2.3 4,415,114 - Xcc-8004.4634.1 0.84 -1.2 4,415,114 - Xcc-8004.4634.1 0.84 -0.4 4,415,116 + Xcc-8004.4634.1 0.85 +1.1 4,415,116 + Xcc-8004.4634.1 0.85 +0.9 4,415,116 + Xcc-8004.4634.1 0.85 -2.1 4,415,117 - Xcc-8004.4634.1 0.85 -1.1 4,415,215 + +2.5 4,415,215 + +2.7 4,415,215 + +0.3 4,415,215 + -2.0 4,415,215 + -2.3 4,415,215 + -0.3 4,415,215 + -2.7 4,415,216 - +2.2 4,415,216 - -0.7 4,415,216 - -1.6 4,415,219 + -1.8 4,415,219 + +0.1 4,415,220 - -1.3 4,415,344 + Xcc-8004.4635.1 0.34 -1.0 4,415,345 - Xcc-8004.4635.1 0.35 -1.7 4,415,345 - Xcc-8004.4635.1 0.35 +0.9 4,415,834 + Xcc-8004.4637.1 0.15 +1.1 4,415,834 + Xcc-8004.4637.1 0.15 -0.5 4,415,835 - Xcc-8004.4637.1 0.15 -2.9 4,415,864 + Xcc-8004.4637.1 0.19 -3.1 4,415,924 + Xcc-8004.4637.1 0.27 -2.5 4,415,924 + Xcc-8004.4637.1 0.27 -1.7 4,415,924 + Xcc-8004.4637.1 0.27 -0.0 4,415,924 + Xcc-8004.4637.1 0.27 +0.3 4,415,925 - Xcc-8004.4637.1 0.27 +0.3 4,415,925 - Xcc-8004.4637.1 0.27 -1.9 4,416,165 - Xcc-8004.4637.1 0.59 +2.0 4,416,165 - Xcc-8004.4637.1 0.59 +0.9 4,416,212 + Xcc-8004.4637.1 0.65 -1.6 4,416,213 - Xcc-8004.4637.1 0.65 -0.5 4,416,213 - Xcc-8004.4637.1 0.65 -1.1 4,416,213 - Xcc-8004.4637.1 0.65 +0.4 4,416,239 + Xcc-8004.4637.1 0.68 -3.4 4,416,239 + Xcc-8004.4637.1 0.68 -1.5 4,416,239 + Xcc-8004.4637.1 0.68 -1.5 4,416,240 - Xcc-8004.4637.1 0.68 -0.1 4,416,240 - Xcc-8004.4637.1 0.68 -2.7 4,416,240 - Xcc-8004.4637.1 0.68 +0.6 4,416,240 - Xcc-8004.4637.1 0.68 +0.4 4,416,240 - Xcc-8004.4637.1 0.68 -0.6 4,416,367 + Xcc-8004.4637.1 0.85 -1.0 4,416,368 - Xcc-8004.4637.1 0.85 +0.7 4,416,378 - Xcc-8004.4637.1 0.86 -2.7 4,416,378 - Xcc-8004.4637.1 0.86 -1.3 4,416,378 - Xcc-8004.4637.1 0.86 -2.1
Or see this region's nucleotide sequence